RNA–Protein interactions for RNA: ENST00000521559.1

VPS13B-209, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 3

Gene VPS13B, Length 466 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-209ENST00000521559 TMEM92Q6UXU6 159 aa8.69□□□□□ -1.02
VPS13B-209ENST00000521559 ZNF710Q8N1W2 664 aa8.68□□□□□ -1.02
VPS13B-209ENST00000521559 SPRYD3Q8NCJ5 442 aa8.68□□□□□ -1.02
VPS13B-209ENST00000521559 C2orf72A6NCS6 295 aa8.66□□□□□ -1.02
VPS13B-209ENST00000521559 KIF3CO14782 793 aa8.66□□□□□ -1.02
VPS13B-209ENST00000521559 ST18O60284 1047 aa8.66□□□□□ -1.02
VPS13B-209ENST00000521559 ZSWIM6Q9HCJ5 1215 aa8.64□□□□□ -1.03
VPS13B-209ENST00000521559 GPHNQ9NQX3 736 aaPredicted RBP8.64□□□□□ -1.03
VPS13B-209ENST00000521559 POTEMA6NI47 508 aa8.63□□□□□ -1.03
VPS13B-209ENST00000521559 HOXB3P14651 431 aaPredicted RBP8.63□□□□□ -1.03
VPS13B-209ENST00000521559 PDE4AP27815 886 aa8.63□□□□□ -1.03
VPS13B-209ENST00000521559 POTEGQ6S5H5 508 aa8.63□□□□□ -1.03
VPS13B-209ENST00000521559 LCE2DQ5TA82 110 aaPredicted RBP8.61□□□□□ -1.03
VPS13B-209ENST00000521559 PAXIP1Q6ZW49 1069 aaPredicted RBP8.61□□□□□ -1.03
VPS13B-209ENST00000521559 FOXK1P85037 733 aa8.6□□□□□ -1.03
VPS13B-209ENST00000521559 CFAP44Q96MT7 982 aa8.6□□□□□ -1.03
VPS13B-209ENST00000521559 HOXB1P14653 301 aaPredicted RBP8.59□□□□□ -1.03
VPS13B-209ENST00000521559 SLC34A2O95436 690 aa8.58□□□□□ -1.04
VPS13B-209ENST00000521559 CRISPLD2Q9H0B8 497 aa8.58□□□□□ -1.04
VPS13B-209ENST00000521559 PCDH10Q9P2E7 1040 aa8.58□□□□□ -1.04
VPS13B-209ENST00000521559 EMP3P54852 163 aa8.57□□□□□ -1.04
VPS13B-209ENST00000521559 PLPP6Q8IY26 295 aa8.57□□□□□ -1.04
VPS13B-209ENST00000521559 DSG2Q14126 1118 aa8.55□□□□□ -1.04
VPS13B-209ENST00000521559 TBC1D12O60347 775 aa8.54□□□□□ -1.04
VPS13B-209ENST00000521559 PPP1R15BQ5SWA1 713 aa8.54□□□□□ -1.04
VPS13B-209ENST00000521559 GPR153Q6NV75 609 aa8.54□□□□□ -1.04
VPS13B-209ENST00000521559 MARVELD3Q96A59 401 aa8.54□□□□□ -1.04
VPS13B-209ENST00000521559 LARP6Q9BRS8 491 aaKnown RBP8.54□□□□□ -1.04
VPS13B-209ENST00000521559 DDX27Q96GQ7 796 aaKnown RBP8.53□□□□□ -1.04
VPS13B-209ENST00000521559 NCKAP5LQ9HCH0 1330 aa8.53□□□□□ -1.04
VPS13B-209ENST00000521559 ARSIQ5FYB1 569 aa8.52□□□□□ -1.05
VPS13B-209ENST00000521559 PCDHGA4Q9Y5G9 962 aa8.51□□□□□ -1.05
VPS13B-209ENST00000521559 ERBB3P21860 1342 aa8.51□□□□□ -1.05
VPS13B-209ENST00000521559 FAM205CA6NFA0 338 aa8.5□□□□□ -1.05
VPS13B-209ENST00000521559 MFSD10Q14728 455 aa8.5□□□□□ -1.05
VPS13B-209ENST00000521559 PTCD2Q8WV60 388 aaKnown RBP8.5□□□□□ -1.05
VPS13B-209ENST00000521559 CADPS2Q86UW7 1296 aa8.49□□□□□ -1.05
VPS13B-209ENST00000521559 CDAN1Q8IWY9 1227 aa8.47□□□□□ -1.05
VPS13B-209ENST00000521559 HS3ST6Q96QI5 342 aa8.47□□□□□ -1.05
VPS13B-209ENST00000521559 PSDA5PKW4 1024 aaPredicted RBP8.45□□□□□ -1.06
VPS13B-209ENST00000521559 ZNF316A6NFI3 1004 aaPredicted RBP8.45□□□□□ -1.06
VPS13B-209ENST00000521559 NUDT7P0C024 238 aa8.45□□□□□ -1.06
VPS13B-209ENST00000521559 OXER1Q8TDS5 423 aa8.45□□□□□ -1.06
VPS13B-209ENST00000521559 WDR70Q9NW82 654 aa8.45□□□□□ -1.06
VPS13B-209ENST00000521559 VARS2Q5ST30 1063 aaKnown RBP8.44□□□□□ -1.06
VPS13B-209ENST00000521559 KHSRPQ92945 711 aaKnown RBP eCLIP8.44□□□□□ -1.068e-6■■■□□ 18.5
VPS13B-209ENST00000521559 UPF1Q92900 1129 aaKnown RBP eCLIP8.43□□□□□ -1.06
VPS13B-209ENST00000521559 MAP3K9P80192 1104 aa8.42□□□□□ -1.06
VPS13B-209ENST00000521559 PLCB2Q00722 1185 aa8.42□□□□□ -1.06
VPS13B-209ENST00000521559 ZNF687Q8N1G0 1237 aa8.4□□□□□ -1.06
VPS13B-209ENST00000521559 LHX6Q9UPM6 363 aa8.4□□□□□ -1.06
VPS13B-209ENST00000521559 CAMK2BQ13554 666 aa8.39□□□□□ -1.07
VPS13B-209ENST00000521559 POTEB3A0JP26 581 aa8.38□□□□□ -1.07
VPS13B-209ENST00000521559 POTEBQ6S5H4 581 aa8.38□□□□□ -1.07
VPS13B-209ENST00000521559 TSHZ2Q9NRE2 1034 aa8.38□□□□□ -1.07
VPS13B-209ENST00000521559 KDM4FA0A1W2PPD8 638 aa8.37□□□□□ -1.07
VPS13B-209ENST00000521559 E2F4Q16254 413 aa8.37□□□□□ -1.07
VPS13B-209ENST00000521559 EMILIN3Q9NT22 766 aa8.36□□□□□ -1.07
VPS13B-209ENST00000521559 EVI5O60447 810 aa8.35□□□□□ -1.07
VPS13B-209ENST00000521559 PBX2P40425 430 aa8.35□□□□□ -1.07
VPS13B-209ENST00000521559 PPP4R3BQ5MIZ7 849 aa8.35□□□□□ -1.07
VPS13B-209ENST00000521559 ANO8Q9HCE9 1232 aaPredicted RBP8.35□□□□□ -1.07
VPS13B-209ENST00000521559 KCNH8Q96L42 1107 aa8.32□□□□□ -1.08
VPS13B-209ENST00000521559 DPYSL4O14531 572 aa8.31□□□□□ -1.08
VPS13B-209ENST00000521559 KRTAP3-3Q9BYR6 98 aa8.31□□□□□ -1.08
VPS13B-209ENST00000521559 KRTAP3-2Q9BYR7 98 aa8.31□□□□□ -1.08
VPS13B-209ENST00000521559 SPDYE16A6NNV3 312 aaPredicted RBP8.3□□□□□ -1.08
VPS13B-209ENST00000521559 HAP1P54257 671 aaPredicted RBP8.3□□□□□ -1.08
VPS13B-209ENST00000521559 ZNF454Q8N9F8 522 aa8.3□□□□□ -1.08
VPS13B-209ENST00000521559 JPH4Q96JJ6 628 aa8.3□□□□□ -1.08
VPS13B-209ENST00000521559 ARIH1Q9Y4X5 557 aaPredicted RBP8.3□□□□□ -1.08
VPS13B-209ENST00000521559 ARHGAP33O14559 1287 aa8.29□□□□□ -1.08
VPS13B-209ENST00000521559 FOSBP53539 338 aa8.29□□□□□ -1.08
VPS13B-209ENST00000521559 PLSCR2Q9NRY7 297 aa8.29□□□□□ -1.08
VPS13B-209ENST00000521559 PHF14O94880 888 aa8.26□□□□□ -1.09
VPS13B-209ENST00000521559 PDIA6Q15084 440 aa8.26□□□□□ -1.09
VPS13B-209ENST00000521559 P3H3Q8IVL6 736 aa8.26□□□□□ -1.09
VPS13B-209ENST00000521559 FBXW7Q969H0 707 aa8.26□□□□□ -1.09
VPS13B-209ENST00000521559 ZDHHC16Q969W1 377 aa8.26□□□□□ -1.09
VPS13B-209ENST00000521559 PTGER2P43116 358 aa8.25□□□□□ -1.09
VPS13B-209ENST00000521559 LSM11P83369 360 aaKnown RBP eCLIP8.25□□□□□ -1.09
VPS13B-209ENST00000521559 SPNS2Q8IVW8 549 aa8.25□□□□□ -1.09
VPS13B-209ENST00000521559 EPAS1Q99814 870 aa8.25□□□□□ -1.09
VPS13B-209ENST00000521559 BCL2L12Q9HB09 334 aa8.25□□□□□ -1.09
VPS13B-209ENST00000521559 PTPREP23469 700 aa8.24□□□□□ -1.09
VPS13B-209ENST00000521559 TYW1BQ6NUM6 668 aa8.24□□□□□ -1.09
VPS13B-209ENST00000521559 ANKRD13DQ6ZTN6 518 aa8.24□□□□□ -1.09
VPS13B-209ENST00000521559 ARHGEF1Q92888 912 aaKnown RBP8.24□□□□□ -1.09
VPS13B-209ENST00000521559 AXIN2Q9Y2T1 843 aa8.23□□□□□ -1.09
VPS13B-209ENST00000521559 PCDHGA10Q9Y5H3 936 aa8.22□□□□□ -1.09
VPS13B-209ENST00000521559 TK2O00142 265 aa8.21□□□□□ -1.1
VPS13B-209ENST00000521559 POTEEQ6S8J3 1075 aa8.21□□□□□ -1.1
VPS13B-209ENST00000521559 KCNK17Q96T54 332 aa8.21□□□□□ -1.1
VPS13B-209ENST00000521559 VSIG10Q8N0Z9 540 aa8.2□□□□□ -1.1
VPS13B-209ENST00000521559 PSEN2P49810 448 aa8.19□□□□□ -1.1
VPS13B-209ENST00000521559 DDX12PQ92771 950 aa8.19□□□□□ -1.1
VPS13B-209ENST00000521559 ADAM33Q9BZ11 813 aa8.19□□□□□ -1.1
VPS13B-209ENST00000521559 MMRN1Q13201 1228 aa8.18□□□□□ -1.1
VPS13B-209ENST00000521559 KCNV2Q8TDN2 545 aa8.18□□□□□ -1.1
VPS13B-209ENST00000521559 NBR1Q14596 966 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 150.2 ms