RNA–Protein interactions for RNA: ENST00000520451.1

CSMD1-207, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 2

Gene CSMD1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-207ENST00000520451 CLIP1P30622 1438 aa24.81■■□□□ 1.56
CSMD1-207ENST00000520451 YEATS2Q9ULM3 1422 aa24.81■■□□□ 1.56
CSMD1-207ENST00000520451 EFCAB2Q5VUJ9 269 aa24.8■■□□□ 1.56
CSMD1-207ENST00000520451 MAGI2Q86UL8 1455 aa24.8■■□□□ 1.56
CSMD1-207ENST00000520451 LRRIQ1Q96JM4 1722 aa24.79■■□□□ 1.56
CSMD1-207ENST00000520451 PCF11O94913 1555 aaKnown RBP24.77■■□□□ 1.56
CSMD1-207ENST00000520451 CASKIN1Q8WXD9 1431 aa24.77■■□□□ 1.56
CSMD1-207ENST00000520451 ARHGAP5Q13017 1502 aa24.75■■□□□ 1.55
CSMD1-207ENST00000520451 RIMS1Q86UR5 1692 aaKnown RBP24.73■■□□□ 1.55
CSMD1-207ENST00000520451 CCDC18Q5T9S5 1454 aa24.73■■□□□ 1.55
CSMD1-207ENST00000520451 ILDR1Q86SU0 546 aaPredicted RBP24.72■■□□□ 1.55
CSMD1-207ENST00000520451 SIGLEC1Q9BZZ2 1709 aa24.72■■□□□ 1.55
CSMD1-207ENST00000520451 ZNF518AQ6AHZ1 1483 aa24.69■■□□□ 1.54
CSMD1-207ENST00000520451 MLECQ14165 292 aa24.68■■□□□ 1.54
CSMD1-207ENST00000520451 ATP10AO60312 1499 aa24.67■■□□□ 1.54
CSMD1-207ENST00000520451 FYCO1Q9BQS8 1478 aa24.67■■□□□ 1.54
CSMD1-207ENST00000520451 C9orf84Q5VXU9 1444 aa24.66■■□□□ 1.54
CSMD1-207ENST00000520451 PLPPR3Q6T4P5 718 aa24.65■■□□□ 1.54
CSMD1-207ENST00000520451 AFAP1Q8N556 730 aa24.64■■□□□ 1.54
CSMD1-207ENST00000520451 CDC42BPBQ9Y5S2 1711 aa24.63■■□□□ 1.53
CSMD1-207ENST00000520451 KDM5CP41229 1560 aa24.63■■□□□ 1.53
CSMD1-207ENST00000520451 PREX2Q70Z35 1606 aa24.62■■□□□ 1.53
CSMD1-207ENST00000520451 LMTK3Q96Q04 1460 aa24.62■■□□□ 1.53
CSMD1-207ENST00000520451 MYT1LQ9UL68 1186 aa24.61■■□□□ 1.53
CSMD1-207ENST00000520451 FER1L4A9Z1Z3 1794 aa24.59■■□□□ 1.53
CSMD1-207ENST00000520451 ABCC1P33527 1531 aa24.57■■□□□ 1.52
CSMD1-207ENST00000520451 ARHGEF12Q9NZN5 1544 aa24.57■■□□□ 1.52
CSMD1-207ENST00000520451 TRAPPC8Q9Y2L5 1435 aa24.55■■□□□ 1.52
CSMD1-207ENST00000520451 DIP2CQ9Y2E4 1556 aa24.54■■□□□ 1.52
CSMD1-207ENST00000520451 MLH3Q9UHC1 1453 aa24.53■■□□□ 1.52
CSMD1-207ENST00000520451 CDC42BPAQ5VT25 1732 aa24.53■■□□□ 1.52
CSMD1-207ENST00000520451 ITSN2Q9NZM3 1697 aa24.53■■□□□ 1.52
CSMD1-207ENST00000520451 HSPA2P54652 639 aa24.51■■□□□ 1.51
CSMD1-207ENST00000520451 ABCA6Q8N139 1617 aa24.5■■□□□ 1.51
CSMD1-207ENST00000520451 ZNF777Q9ULD5 760 aaPredicted RBP24.49■■□□□ 1.51
CSMD1-207ENST00000520451 REREQ9P2R6 1566 aa24.49■■□□□ 1.51
CSMD1-207ENST00000520451 GPATCH8Q9UKJ3 1502 aaKnown RBP24.47■■□□□ 1.51
CSMD1-207ENST00000520451 CEBPAP49715 358 aaPredicted RBP24.45■■□□□ 1.5
CSMD1-207ENST00000520451 SAMD9LQ8IVG5 1584 aa24.45■■□□□ 1.5
CSMD1-207ENST00000520451 MTUS2Q5JR59 1369 aa24.44■■□□□ 1.5
CSMD1-207ENST00000520451 SYCP2Q9BX26 1530 aa24.43■■□□□ 1.5
CSMD1-207ENST00000520451 CCNB3Q8WWL7 1395 aa24.42■■□□□ 1.5
CSMD1-207ENST00000520451 KIDINS220Q9ULH0 1771 aa24.42■■□□□ 1.5
CSMD1-207ENST00000520451 AGLP35573 1532 aa24.42■■□□□ 1.5
CSMD1-207ENST00000520451 CEP162Q5TB80 1403 aa24.42■■□□□ 1.5
CSMD1-207ENST00000520451 CFDP1Q9UEE9 299 aaPredicted RBP24.41■■□□□ 1.5
CSMD1-207ENST00000520451 HNRNPMP52272 730 aaKnown RBP eCLIP24.39■■□□□ 1.49
CSMD1-207ENST00000520451 PREX1Q8TCU6 1659 aa24.38■■□□□ 1.49
CSMD1-207ENST00000520451 FBXO41Q8TF61 875 aa24.38■■□□□ 1.49
CSMD1-207ENST00000520451 SPAG9O60271 1321 aaKnown RBP24.37■■□□□ 1.49
CSMD1-207ENST00000520451 ESF1Q9H501 851 aaKnown RBP24.37■■□□□ 1.49
CSMD1-207ENST00000520451 PLEKHH2Q8IVE3 1493 aa24.37■■□□□ 1.49
CSMD1-207ENST00000520451 KIAA1107Q9UPP5 1409 aa24.36■■□□□ 1.49
CSMD1-207ENST00000520451 EHBP1L1Q8N3D4 1523 aa24.35■■□□□ 1.49
CSMD1-207ENST00000520451 UHRF1BP1Q6BDS2 1440 aa24.32■■□□□ 1.48
CSMD1-207ENST00000520451 ATP7AQ04656 1500 aa24.31■■□□□ 1.48
CSMD1-207ENST00000520451 TIAM1Q13009 1591 aa24.31■■□□□ 1.48
CSMD1-207ENST00000520451 C3P01024 1663 aa24.3■■□□□ 1.48
CSMD1-207ENST00000520451 CNTLNQ9NXG0 1405 aa24.29■■□□□ 1.48
CSMD1-207ENST00000520451 INO80Q9ULG1 1556 aaPredicted RBP24.29■■□□□ 1.48
CSMD1-207ENST00000520451 ZNF644Q9H582 1327 aaPredicted RBP24.27■■□□□ 1.48
CSMD1-207ENST00000520451 SETD1BQ9UPS6 1966 aaKnown RBP24.26■■□□□ 1.47
CSMD1-207ENST00000520451 SUPT6HQ7KZ85 1726 aaKnown RBP24.25■■□□□ 1.47
CSMD1-207ENST00000520451 A2MP01023 1474 aa24.25■■□□□ 1.47
CSMD1-207ENST00000520451 PLXNC1O60486 1568 aa24.24■■□□□ 1.47
CSMD1-207ENST00000520451 MBD5Q9P267 1494 aa24.21■■□□□ 1.47
CSMD1-207ENST00000520451 NCOA2Q15596 1464 aa24.19■■□□□ 1.46
CSMD1-207ENST00000520451 MROH2AA6NES4 1674 aa24.19■■□□□ 1.46
CSMD1-207ENST00000520451 LOC105371045A0A1W2PR82 267 aa24.19■■□□□ 1.46
CSMD1-207ENST00000520451 DMRT2Q9Y5R5 561 aa24.19■■□□□ 1.46
CSMD1-207ENST00000520451 STRCQ7RTU9 1775 aa24.19■■□□□ 1.46
CSMD1-207ENST00000520451 ZMYM3Q14202 1370 aa24.17■■□□□ 1.46
CSMD1-207ENST00000520451 CERKQ8TCT0 537 aa24.17■■□□□ 1.46
CSMD1-207ENST00000520451 ADGBQ8N7X0 1667 aa24.16■■□□□ 1.46
CSMD1-207ENST00000520451 GGT6Q6P531 493 aa24.16■■□□□ 1.46
CSMD1-207ENST00000520451 NPATQ14207 1427 aa24.16■■□□□ 1.46
CSMD1-207ENST00000520451 RTEL1-TNFRSF6BF6WH68 1400 aa24.15■■□□□ 1.46
CSMD1-207ENST00000520451 VPS8Q8N3P4 1428 aa24.15■■□□□ 1.46
CSMD1-207ENST00000520451 CLTCQ00610 1675 aaKnown RBP24.14■■□□□ 1.45
CSMD1-207ENST00000520451 CAMSAP2Q08AD1 1489 aa24.13■■□□□ 1.45
CSMD1-207ENST00000520451 CCDC141Q6ZP82 1450 aa24.13■■□□□ 1.45
CSMD1-207ENST00000520451 DHX29Q7Z478 1369 aaKnown RBP24.09■■□□□ 1.45
CSMD1-207ENST00000520451 PTPRTO14522 1441 aa24.09■■□□□ 1.45
CSMD1-207ENST00000520451 NCOA1Q15788 1441 aa24.09■■□□□ 1.45
CSMD1-207ENST00000520451 LRRC9Q6ZRR7 1453 aa24.08■■□□□ 1.45
CSMD1-207ENST00000520451 PPP6R1Q9UPN7 881 aa24.08■■□□□ 1.45
CSMD1-207ENST00000520451 RSPH4AQ5TD94 716 aa24.07■■□□□ 1.44
CSMD1-207ENST00000520451 PTPRKQ15262 1439 aa24.06■■□□□ 1.44
CSMD1-207ENST00000520451 CAMSAP1Q5T5Y3 1602 aa24.04■■□□□ 1.44
CSMD1-207ENST00000520451 MYO3AQ8NEV4 1616 aa24.02■■□□□ 1.44
CSMD1-207ENST00000520451 KIF3BO15066 747 aa24.02■■□□□ 1.44
CSMD1-207ENST00000520451 ARHGEF5Q12774 1597 aa24.02■■□□□ 1.44
CSMD1-207ENST00000520451 MAP3K1Q13233 1512 aa24■■□□□ 1.43
CSMD1-207ENST00000520451 ZNF142P52746 1687 aaPredicted RBP24■■□□□ 1.43
CSMD1-207ENST00000520451 TSPY4P0CV99 314 aa24■■□□□ 1.43
CSMD1-207ENST00000520451 TSPY10P0CW01 314 aa24■■□□□ 1.43
CSMD1-207ENST00000520451 KANK4Q5T7N3 995 aaPredicted RBP24■■□□□ 1.43
CSMD1-207ENST00000520451 CEP170BQ9Y4F5 1589 aaPredicted RBP23.99■■□□□ 1.43
CSMD1-207ENST00000520451 NCKAP5LQ9HCH0 1330 aa23.97■■□□□ 1.43
CSMD1-207ENST00000520451 KDM5DQ9BY66 1539 aa23.95■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms