RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 POGZQ7Z3K3 1410 aa47.81■■■■■ 5.24
SYNPO-203ENST00000518872 CDC42BPBQ9Y5S2 1711 aa47.81■■■■■ 5.24
SYNPO-203ENST00000518872 MAGI2Q86UL8 1455 aa47.8■■■■■ 5.24
SYNPO-203ENST00000518872 ARHGAP5Q13017 1502 aa47.8■■■■■ 5.24
SYNPO-203ENST00000518872 PREX2Q70Z35 1606 aa47.78■■■■■ 5.24
SYNPO-203ENST00000518872 ZFYVE16Q7Z3T8 1539 aa47.71■■■■■ 5.23
SYNPO-203ENST00000518872 ADAMTSL3P82987 1691 aa47.69■■■■■ 5.22
SYNPO-203ENST00000518872 CDC42BPAQ5VT25 1732 aa47.69■■■■■ 5.22
SYNPO-203ENST00000518872 BCORL1Q5H9F3 1711 aa47.65■■■■■ 5.22
SYNPO-203ENST00000518872 ZNF518AQ6AHZ1 1483 aa47.64■■■■■ 5.22
SYNPO-203ENST00000518872 YEATS2Q9ULM3 1422 aa47.63■■■■■ 5.21
SYNPO-203ENST00000518872 KDM5CP41229 1560 aa47.61■■■■■ 5.21
SYNPO-203ENST00000518872 LOC105371045A0A1W2PR82 267 aa47.59■■■■■ 5.21
SYNPO-203ENST00000518872 ABCC1P33527 1531 aa47.57■■■■■ 5.21
SYNPO-203ENST00000518872 MTUS2Q5JR59 1369 aa47.53■■■■■ 5.2
SYNPO-203ENST00000518872 GPATCH8Q9UKJ3 1502 aaKnown RBP47.52■■■■■ 5.2
SYNPO-203ENST00000518872 ARID4BQ4LE39 1312 aaPredicted RBP47.51■■■■■ 5.2
SYNPO-203ENST00000518872 ITSN2Q9NZM3 1697 aa47.51■■■■■ 5.2
SYNPO-203ENST00000518872 EHBP1L1Q8N3D4 1523 aa47.5■■■■■ 5.19
SYNPO-203ENST00000518872 SIGLEC1Q9BZZ2 1709 aa47.49■■■■■ 5.19
SYNPO-203ENST00000518872 ATP10AO60312 1499 aa47.46■■■■■ 5.19
SYNPO-203ENST00000518872 ARHGEF12Q9NZN5 1544 aa47.46■■■■■ 5.19
SYNPO-203ENST00000518872 HECW2Q9P2P5 1572 aa47.45■■■■■ 5.19
SYNPO-203ENST00000518872 MADDQ8WXG6 1647 aa47.45■■■■■ 5.19
SYNPO-203ENST00000518872 AFAP1Q8N556 730 aa47.44■■■■■ 5.18
SYNPO-203ENST00000518872 PTPRMP28827 1452 aa47.43■■■■■ 5.18
SYNPO-203ENST00000518872 MLH3Q9UHC1 1453 aa47.42■■■■■ 5.18
SYNPO-203ENST00000518872 C9orf84Q5VXU9 1444 aa47.41■■■■■ 5.18
SYNPO-203ENST00000518872 VPS8Q8N3P4 1428 aa47.41■■■■■ 5.18
SYNPO-203ENST00000518872 SAMD9LQ8IVG5 1584 aa47.41■■■■■ 5.18
SYNPO-203ENST00000518872 TRAPPC8Q9Y2L5 1435 aa47.39■■■■■ 5.18
SYNPO-203ENST00000518872 CCNB3Q8WWL7 1395 aa47.37■■■■■ 5.17
SYNPO-203ENST00000518872 REREQ9P2R6 1566 aa47.33■■■■■ 5.17
SYNPO-203ENST00000518872 DIP2CQ9Y2E4 1556 aa47.32■■■■■ 5.17
SYNPO-203ENST00000518872 TIAM1Q13009 1591 aa47.32■■■■■ 5.17
SYNPO-203ENST00000518872 PLEKHH2Q8IVE3 1493 aa47.31■■■■■ 5.16
SYNPO-203ENST00000518872 KIAA1107Q9UPP5 1409 aa47.3■■■■■ 5.16
SYNPO-203ENST00000518872 CFDP1Q9UEE9 299 aaPredicted RBP47.28■■■■■ 5.16
SYNPO-203ENST00000518872 ABCA6Q8N139 1617 aa47.27■■■■■ 5.16
SYNPO-203ENST00000518872 SYCP2Q9BX26 1530 aa47.27■■■■■ 5.16
SYNPO-203ENST00000518872 RIMS1Q86UR5 1692 aaKnown RBP47.27■■■■■ 5.16
SYNPO-203ENST00000518872 KIDINS220Q9ULH0 1771 aa47.25■■■■■ 5.15
SYNPO-203ENST00000518872 ZNF777Q9ULD5 760 aaPredicted RBP47.24■■■■■ 5.15
SYNPO-203ENST00000518872 SUPT6HQ7KZ85 1726 aaKnown RBP47.23■■■■■ 5.15
SYNPO-203ENST00000518872 FER1L4A9Z1Z3 1794 aa47.19■■■■■ 5.15
SYNPO-203ENST00000518872 MAP3K1Q13233 1512 aa47.19■■■■■ 5.14
SYNPO-203ENST00000518872 MYT1LQ9UL68 1186 aa47.16■■■■■ 5.14
SYNPO-203ENST00000518872 NCOA2Q15596 1464 aa47.15■■■■■ 5.14
SYNPO-203ENST00000518872 AGLP35573 1532 aa47.14■■■■■ 5.14
SYNPO-203ENST00000518872 LRRC9Q6ZRR7 1453 aa47.11■■■■■ 5.13
SYNPO-203ENST00000518872 HNRNPMP52272 730 aaKnown RBP eCLIP47.11■■■■■ 5.13
SYNPO-203ENST00000518872 MLECQ14165 292 aa47.09■■■■■ 5.13
SYNPO-203ENST00000518872 INO80Q9ULG1 1556 aaPredicted RBP47.06■■■■■ 5.12
SYNPO-203ENST00000518872 SPAG9O60271 1321 aaKnown RBP47.05■■■■■ 5.12
SYNPO-203ENST00000518872 ATP7AQ04656 1500 aa47.04■■■■■ 5.12
SYNPO-203ENST00000518872 MBD5Q9P267 1494 aa47.02■■■■■ 5.12
SYNPO-203ENST00000518872 ZNF644Q9H582 1327 aaPredicted RBP46.99■■■■■ 5.11
SYNPO-203ENST00000518872 CAMSAP2Q08AD1 1489 aa46.9■■■■■ 5.1
SYNPO-203ENST00000518872 LMTK3Q96Q04 1460 aa46.9■■■■■ 5.1
SYNPO-203ENST00000518872 PLXNC1O60486 1568 aa46.89■■■■■ 5.1
SYNPO-203ENST00000518872 RTEL1-TNFRSF6BF6WH68 1400 aa46.87■■■■■ 5.09
SYNPO-203ENST00000518872 KANK4Q5T7N3 995 aaPredicted RBP46.86■■■■■ 5.09
SYNPO-203ENST00000518872 ADGBQ8N7X0 1667 aa46.84■■■■■ 5.09
SYNPO-203ENST00000518872 RSPH4AQ5TD94 716 aa46.83■■■■■ 5.09
SYNPO-203ENST00000518872 A2MP01023 1474 aa46.82■■■■■ 5.09
SYNPO-203ENST00000518872 CCDC141Q6ZP82 1450 aa46.82■■■■■ 5.09
SYNPO-203ENST00000518872 ARHGEF5Q12774 1597 aa46.8■■■■■ 5.08
SYNPO-203ENST00000518872 CNTLNQ9NXG0 1405 aa46.75■■■■■ 5.07
SYNPO-203ENST00000518872 SETD1BQ9UPS6 1966 aaKnown RBP46.75■■■■■ 5.07
SYNPO-203ENST00000518872 MIA2Q96PC5 1412 aa46.74■■■■■ 5.07
SYNPO-203ENST00000518872 MYOM3Q5VTT5 1437 aa46.72■■■■■ 5.07
SYNPO-203ENST00000518872 PLPPR3Q6T4P5 718 aa46.72■■■■■ 5.07
SYNPO-203ENST00000518872 C3P01024 1663 aa46.71■■■■■ 5.07
SYNPO-203ENST00000518872 APLP2Q06481 763 aa46.7■■■■■ 5.07
SYNPO-203ENST00000518872 PREX1Q8TCU6 1659 aa46.7■■■■■ 5.07
SYNPO-203ENST00000518872 MROH2AA6NES4 1674 aa46.68■■■■■ 5.06
SYNPO-203ENST00000518872 ESF1Q9H501 851 aaKnown RBP46.67■■■■■ 5.06
SYNPO-203ENST00000518872 CEBPAP49715 358 aaPredicted RBP46.66■■■■■ 5.06
SYNPO-203ENST00000518872 DHX29Q7Z478 1369 aaKnown RBP46.61■■■■■ 5.05
SYNPO-203ENST00000518872 MAST1Q9Y2H9 1570 aa46.57■■■■■ 5.05
SYNPO-203ENST00000518872 PPP6R1Q9UPN7 881 aa46.55■■■■■ 5.04
SYNPO-203ENST00000518872 TSPY4P0CV99 314 aa46.54■■■■■ 5.04
SYNPO-203ENST00000518872 TSPY10P0CW01 314 aa46.54■■■■■ 5.04
SYNPO-203ENST00000518872 CLTCQ00610 1675 aaKnown RBP46.5■■■■■ 5.03
SYNPO-203ENST00000518872 HSPA2P54652 639 aa46.5■■■■■ 5.03
SYNPO-203ENST00000518872 UHRF1BP1Q6BDS2 1440 aa46.5■■■■■ 5.03
SYNPO-203ENST00000518872 ZMYM3Q14202 1370 aa46.47■■■■■ 5.03
SYNPO-203ENST00000518872 NPATQ14207 1427 aa46.45■■■■■ 5.03
SYNPO-203ENST00000518872 GGT6Q6P531 493 aa46.45■■■■■ 5.03
SYNPO-203ENST00000518872 PTPN23Q9H3S7 1636 aa46.43■■■■■ 5.02
SYNPO-203ENST00000518872 FAM135AQ9P2D6 1515 aa46.43■■■■■ 5.02
SYNPO-203ENST00000518872 FGD6Q6ZV73 1430 aa46.37■■■■■ 5.01
SYNPO-203ENST00000518872 TCOF1Q13428 1488 aaKnown RBP46.37■■■■■ 5.01
SYNPO-203ENST00000518872 CROCC2H7BZ55 1655 aa46.34■■■■■ 5.01
SYNPO-203ENST00000518872 KIF3BO15066 747 aa46.34■■■■■ 5.01
SYNPO-203ENST00000518872 SHANK2Q9UPX8 1470 aa46.33■■■■■ 5.01
SYNPO-203ENST00000518872 EIF2AK4Q9P2K8 1649 aaKnown RBP46.29■■■■■ 5
SYNPO-203ENST00000518872 PTPRKQ15262 1439 aa46.28■■■■■ 5
SYNPO-203ENST00000518872 DNMT1P26358 1616 aaKnown RBP46.28■■■■■ 5
SYNPO-203ENST00000518872 KDM5DQ9BY66 1539 aa46.28■■■■■ 5
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms