RNA–Protein interactions for RNA: ENST00000517525.1

PVT1-204, Transcript of Pvt1 oncogene, humanhuman

TSL 3

Gene PVT1, Length 392 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-204ENST00000517525 POGZQ7Z3K3 1410 aa39.38■■■■□ 3.89
PVT1-204ENST00000517525 MAGI2Q86UL8 1455 aa39.37■■■■□ 3.89
PVT1-204ENST00000517525 ARHGAP5Q13017 1502 aa39.36■■■■□ 3.89
PVT1-204ENST00000517525 PREX2Q70Z35 1606 aa39.31■■■■□ 3.88
PVT1-204ENST00000517525 MTUS2Q5JR59 1369 aa39.3■■■■□ 3.88
PVT1-204ENST00000517525 ARHGEF40Q8TER5 1519 aa39.3■■■■□ 3.88
PVT1-204ENST00000517525 CDC42BPBQ9Y5S2 1711 aa39.29■■■■□ 3.88
PVT1-204ENST00000517525 VPS8Q8N3P4 1428 aa39.28■■■■□ 3.88
PVT1-204ENST00000517525 GPATCH8Q9UKJ3 1502 aaKnown RBP39.24■■■■□ 3.87
PVT1-204ENST00000517525 ZNF518AQ6AHZ1 1483 aa39.24■■■■□ 3.87
PVT1-204ENST00000517525 ZFYVE16Q7Z3T8 1539 aa39.21■■■■□ 3.87
PVT1-204ENST00000517525 CDC42BPAQ5VT25 1732 aa39.2■■■■□ 3.87
PVT1-204ENST00000517525 EHBP1L1Q8N3D4 1523 aa39.2■■■■□ 3.87
PVT1-204ENST00000517525 YEATS2Q9ULM3 1422 aa39.19■■■■□ 3.86
PVT1-204ENST00000517525 KDM5CP41229 1560 aa39.17■■■■□ 3.86
PVT1-204ENST00000517525 ABCC1P33527 1531 aa39.16■■■■□ 3.86
PVT1-204ENST00000517525 AFAP1Q8N556 730 aa39.15■■■■□ 3.86
PVT1-204ENST00000517525 CCNB3Q8WWL7 1395 aa39.15■■■■□ 3.86
PVT1-204ENST00000517525 ARHGEF12Q9NZN5 1544 aa39.14■■■■□ 3.86
PVT1-204ENST00000517525 TIAM1Q13009 1591 aa39.09■■■■□ 3.85
PVT1-204ENST00000517525 CFDP1Q9UEE9 299 aaPredicted RBP39.09■■■■□ 3.85
PVT1-204ENST00000517525 ATP10AO60312 1499 aa39.09■■■■□ 3.85
PVT1-204ENST00000517525 MLH3Q9UHC1 1453 aa39.09■■■■□ 3.85
PVT1-204ENST00000517525 ADAMTSL3P82987 1691 aa39.09■■■■□ 3.85
PVT1-204ENST00000517525 TRAPPC8Q9Y2L5 1435 aa39.08■■■■□ 3.85
PVT1-204ENST00000517525 MAP3K1Q13233 1512 aa39.08■■■■□ 3.85
PVT1-204ENST00000517525 ARID4BQ4LE39 1312 aaPredicted RBP39.08■■■■□ 3.85
PVT1-204ENST00000517525 KIAA1107Q9UPP5 1409 aa39.07■■■■□ 3.85
PVT1-204ENST00000517525 BCORL1Q5H9F3 1711 aa39.05■■■■□ 3.84
PVT1-204ENST00000517525 PLEKHH2Q8IVE3 1493 aa39.05■■■■□ 3.84
PVT1-204ENST00000517525 SAMD9LQ8IVG5 1584 aa39.04■■■■□ 3.84
PVT1-204ENST00000517525 ITSN2Q9NZM3 1697 aa39.03■■■■□ 3.84
PVT1-204ENST00000517525 C9orf84Q5VXU9 1444 aa39.02■■■■□ 3.84
PVT1-204ENST00000517525 ZNF777Q9ULD5 760 aaPredicted RBP39.01■■■■□ 3.84
PVT1-204ENST00000517525 HECW2Q9P2P5 1572 aa39■■■■□ 3.83
PVT1-204ENST00000517525 NCOA2Q15596 1464 aa38.98■■■■□ 3.83
PVT1-204ENST00000517525 LRRC9Q6ZRR7 1453 aa38.98■■■■□ 3.83
PVT1-204ENST00000517525 SUPT6HQ7KZ85 1726 aaKnown RBP38.94■■■■□ 3.82
PVT1-204ENST00000517525 SIGLEC1Q9BZZ2 1709 aa38.93■■■■□ 3.82
PVT1-204ENST00000517525 REREQ9P2R6 1566 aa38.93■■■■□ 3.82
PVT1-204ENST00000517525 SYCP2Q9BX26 1530 aa38.93■■■■□ 3.82
PVT1-204ENST00000517525 PTPRMP28827 1452 aa38.92■■■■□ 3.82
PVT1-204ENST00000517525 HNRNPMP52272 730 aaKnown RBP eCLIP38.92■■■■□ 3.829e-7■■■■□ 20.3
PVT1-204ENST00000517525 DIP2CQ9Y2E4 1556 aa38.91■■■■□ 3.82
PVT1-204ENST00000517525 MYT1LQ9UL68 1186 aa38.87■■■■□ 3.81
PVT1-204ENST00000517525 MADDQ8WXG6 1647 aa38.87■■■■□ 3.81
PVT1-204ENST00000517525 KANK4Q5T7N3 995 aaPredicted RBP38.84■■■■□ 3.81
PVT1-204ENST00000517525 KIDINS220Q9ULH0 1771 aa38.84■■■■□ 3.81
PVT1-204ENST00000517525 ABCA6Q8N139 1617 aa38.84■■■■□ 3.81
PVT1-204ENST00000517525 MBD5Q9P267 1494 aa38.84■■■■□ 3.81
PVT1-204ENST00000517525 SPAG9O60271 1321 aaKnown RBP38.84■■■■□ 3.81
PVT1-204ENST00000517525 ZNF644Q9H582 1327 aaPredicted RBP38.84■■■■□ 3.81
PVT1-204ENST00000517525 AGLP35573 1532 aa38.81■■■■□ 3.8
PVT1-204ENST00000517525 RSPH4AQ5TD94 716 aa38.76■■■■□ 3.8
PVT1-204ENST00000517525 APLP2Q06481 763 aa38.74■■■■□ 3.79
PVT1-204ENST00000517525 MLECQ14165 292 aa38.74■■■■□ 3.79
PVT1-204ENST00000517525 ATP7AQ04656 1500 aa38.73■■■■□ 3.79
PVT1-204ENST00000517525 INO80Q9ULG1 1556 aaPredicted RBP38.72■■■■□ 3.79
PVT1-204ENST00000517525 RTEL1-TNFRSF6BF6WH68 1400 aa38.71■■■■□ 3.79
PVT1-204ENST00000517525 CAMSAP2Q08AD1 1489 aa38.7■■■■□ 3.79
PVT1-204ENST00000517525 RIMS1Q86UR5 1692 aaKnown RBP38.7■■■■□ 3.79
PVT1-204ENST00000517525 MIA2Q96PC5 1412 aa38.67■■■■□ 3.78
PVT1-204ENST00000517525 MYOM3Q5VTT5 1437 aa38.64■■■■□ 3.78
PVT1-204ENST00000517525 CCDC141Q6ZP82 1450 aa38.64■■■■□ 3.78
PVT1-204ENST00000517525 FER1L4A9Z1Z3 1794 aa38.63■■■■□ 3.77
PVT1-204ENST00000517525 ARHGEF5Q12774 1597 aa38.61■■■■□ 3.77
PVT1-204ENST00000517525 A2MP01023 1474 aa38.6■■■■□ 3.77
PVT1-204ENST00000517525 PLXNC1O60486 1568 aa38.59■■■■□ 3.77
PVT1-204ENST00000517525 ADGBQ8N7X0 1667 aa38.5■■■■□ 3.75
PVT1-204ENST00000517525 CNTLNQ9NXG0 1405 aa38.49■■■■□ 3.75
PVT1-204ENST00000517525 DHX29Q7Z478 1369 aaKnown RBP38.49■■■■□ 3.75
PVT1-204ENST00000517525 TSPY4P0CV99 314 aa38.49■■■■□ 3.75
PVT1-204ENST00000517525 TSPY10P0CW01 314 aa38.49■■■■□ 3.75
PVT1-204ENST00000517525 LMTK3Q96Q04 1460 aa38.46■■■■□ 3.75
PVT1-204ENST00000517525 PPP6R1Q9UPN7 881 aa38.45■■■■□ 3.75
PVT1-204ENST00000517525 ESF1Q9H501 851 aaKnown RBP38.44■■■■□ 3.74
PVT1-204ENST00000517525 CEBPAP49715 358 aaPredicted RBP38.41■■■■□ 3.74
PVT1-204ENST00000517525 MAST1Q9Y2H9 1570 aa38.4■■■■□ 3.74
PVT1-204ENST00000517525 ILDR1Q86SU0 546 aaPredicted RBP38.39■■■■□ 3.74
PVT1-204ENST00000517525 FGD6Q6ZV73 1430 aa38.38■■■■□ 3.73
PVT1-204ENST00000517525 PLPPR3Q6T4P5 718 aa38.37■■■■□ 3.73
PVT1-204ENST00000517525 TCOF1Q13428 1488 aaKnown RBP38.35■■■■□ 3.73
PVT1-204ENST00000517525 PTPN23Q9H3S7 1636 aa38.32■■■■□ 3.73
PVT1-204ENST00000517525 GGT6Q6P531 493 aa38.31■■■■□ 3.72
PVT1-204ENST00000517525 SETD1BQ9UPS6 1966 aaKnown RBP38.31■■■■□ 3.72
PVT1-204ENST00000517525 MROH2AA6NES4 1674 aa38.3■■■■□ 3.72
PVT1-204ENST00000517525 ZMYM3Q14202 1370 aa38.3■■■■□ 3.72
PVT1-204ENST00000517525 C3P01024 1663 aa38.3■■■■□ 3.72
PVT1-204ENST00000517525 ABCC5O15440 1437 aa38.28■■■■□ 3.72
PVT1-204ENST00000517525 SHANK2Q9UPX8 1470 aa38.28■■■■□ 3.72
PVT1-204ENST00000517525 KIF3BO15066 747 aa38.25■■■■□ 3.71
PVT1-204ENST00000517525 NPATQ14207 1427 aa38.24■■■■□ 3.71
PVT1-204ENST00000517525 FAM135AQ9P2D6 1515 aa38.23■■■■□ 3.71
PVT1-204ENST00000517525 PREX1Q8TCU6 1659 aa38.23■■■■□ 3.71
PVT1-204ENST00000517525 DAPK1P53355 1430 aa38.2■■■■□ 3.71
PVT1-204ENST00000517525 UHRF1BP1Q6BDS2 1440 aa38.2■■■■□ 3.71
PVT1-204ENST00000517525 HSPA2P54652 639 aa38.18■■■■□ 3.7
PVT1-204ENST00000517525 DNMT1P26358 1616 aaKnown RBP38.17■■■■□ 3.7
PVT1-204ENST00000517525 CLTCQ00610 1675 aaKnown RBP38.16■■■■□ 3.7
PVT1-204ENST00000517525 DUOX2Q9NRD8 1548 aa38.13■■■■□ 3.69
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms