RNA–Protein interactions for RNA: ENST00000517354.5

CPNE3-201, Transcript of copine 3, humanhuman

TSL 4

Gene CPNE3, Length 566 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-201ENST00000517354 C3orf67Q6ZVT6 689 aa13.76□□□□□ -0.21
CPNE3-201ENST00000517354 DDX27Q96GQ7 796 aaKnown RBP13.74□□□□□ -0.21
CPNE3-201ENST00000517354 NCKAP5LQ9HCH0 1330 aa13.73□□□□□ -0.21
CPNE3-201ENST00000517354 CRISPLD2Q9H0B8 497 aa13.72□□□□□ -0.21
CPNE3-201ENST00000517354 GPHNQ9NQX3 736 aaPredicted RBP13.72□□□□□ -0.21
CPNE3-201ENST00000517354 P3H3Q8IVL6 736 aa13.71□□□□□ -0.21
CPNE3-201ENST00000517354 BCANQ96GW7 911 aa13.7□□□□□ -0.22
CPNE3-201ENST00000517354 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.7□□□□□ -0.22
CPNE3-201ENST00000517354 E2F4Q16254 413 aa13.69□□□□□ -0.22
CPNE3-201ENST00000517354 NBR1Q14596 966 aa13.66□□□□□ -0.22
CPNE3-201ENST00000517354 C2orf72A6NCS6 295 aa13.65□□□□□ -0.22
CPNE3-201ENST00000517354 MFSD10Q14728 455 aa13.65□□□□□ -0.22
CPNE3-201ENST00000517354 PPP1R15BQ5SWA1 713 aa13.65□□□□□ -0.22
CPNE3-201ENST00000517354 MAMSTRQ6ZN01 415 aa13.62□□□□□ -0.23
CPNE3-201ENST00000517354 DSG2Q14126 1118 aa13.61□□□□□ -0.23
CPNE3-201ENST00000517354 FOXK1P85037 733 aa13.6□□□□□ -0.23
CPNE3-201ENST00000517354 PLPP6Q8IY26 295 aa13.6□□□□□ -0.23
CPNE3-201ENST00000517354 SCUBE2Q9NQ36 999 aa13.59□□□□□ -0.23
CPNE3-201ENST00000517354 KCNV2Q8TDN2 545 aa13.57□□□□□ -0.24
CPNE3-201ENST00000517354 KIF3CO14782 793 aa13.56□□□□□ -0.24
CPNE3-201ENST00000517354 TMEM92Q6UXU6 159 aa13.56□□□□□ -0.24
CPNE3-201ENST00000517354 ARHGEF1Q92888 912 aaKnown RBP13.56□□□□□ -0.24
CPNE3-201ENST00000517354 POTEB2H3BUK9 544 aa13.54□□□□□ -0.24
CPNE3-201ENST00000517354 SLAIN1Q8ND83 568 aa13.51□□□□□ -0.25
CPNE3-201ENST00000517354 POTEJP0CG39 1038 aa13.5□□□□□ -0.25
CPNE3-201ENST00000517354 CAMK2BQ13554 666 aa13.5□□□□□ -0.25
CPNE3-201ENST00000517354 MAP3K9P80192 1104 aa13.48□□□□□ -0.25
CPNE3-201ENST00000517354 TBC1D12O60347 775 aa13.45□□□□□ -0.26
CPNE3-201ENST00000517354 UPF1Q92900 1129 aaKnown RBP eCLIP13.45□□□□□ -0.26
CPNE3-201ENST00000517354 TULP1O00294 542 aaPredicted RBP13.43□□□□□ -0.26
CPNE3-201ENST00000517354 LHX8Q68G74 356 aa13.43□□□□□ -0.26
CPNE3-201ENST00000517354 EMILIN3Q9NT22 766 aa13.43□□□□□ -0.26
CPNE3-201ENST00000517354 DPYSL4O14531 572 aa13.42□□□□□ -0.26
CPNE3-201ENST00000517354 ARIH1Q9Y4X5 557 aaPredicted RBP13.41□□□□□ -0.26
CPNE3-201ENST00000517354 SPDYE16A6NNV3 312 aaPredicted RBP13.38□□□□□ -0.27
CPNE3-201ENST00000517354 ZNF316A6NFI3 1004 aaPredicted RBP13.36□□□□□ -0.27
CPNE3-201ENST00000517354 RIMBP2O15034 1052 aa13.36□□□□□ -0.27
CPNE3-201ENST00000517354 DOK7Q18PE1 504 aa13.36□□□□□ -0.27
CPNE3-201ENST00000517354 SMYD5Q6GMV2 418 aa13.36□□□□□ -0.27
CPNE3-201ENST00000517354 OXER1Q8TDS5 423 aa13.36□□□□□ -0.27
CPNE3-201ENST00000517354 SNPHO15079 494 aa13.35□□□□□ -0.27
CPNE3-201ENST00000517354 SLC34A2O95436 690 aa13.35□□□□□ -0.27
CPNE3-201ENST00000517354 ZNF710Q8N1W2 664 aa13.35□□□□□ -0.27
CPNE3-201ENST00000517354 SEMA3EO15041 775 aa13.34□□□□□ -0.27
CPNE3-201ENST00000517354 PTCD2Q8WV60 388 aaKnown RBP13.33□□□□□ -0.28
CPNE3-201ENST00000517354 OTUD5Q96G74 571 aa13.31□□□□□ -0.28
CPNE3-201ENST00000517354 EVI5O60447 810 aa13.29□□□□□ -0.28
CPNE3-201ENST00000517354 PDIA6Q15084 440 aa13.29□□□□□ -0.28
CPNE3-201ENST00000517354 PCDHGA4Q9Y5G9 962 aa13.29□□□□□ -0.28
CPNE3-201ENST00000517354 TESPA1A2RU30 521 aaPredicted RBP13.27□□□□□ -0.29
CPNE3-201ENST00000517354 GRXCR2A6NFK2 248 aa13.24□□□□□ -0.29
CPNE3-201ENST00000517354 ZSWIM6Q9HCJ5 1215 aa13.24□□□□□ -0.29
CPNE3-201ENST00000517354 ARSIQ5FYB1 569 aa13.23□□□□□ -0.29
CPNE3-201ENST00000517354 HOXB3P14651 431 aaPredicted RBP13.22□□□□□ -0.29
CPNE3-201ENST00000517354 MLLT3P42568 568 aaPredicted RBP13.21□□□□□ -0.29
CPNE3-201ENST00000517354 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.21□□□□□ -0.29
CPNE3-201ENST00000517354 LMOD2Q6P5Q4 547 aa13.19□□□□□ -0.3
CPNE3-201ENST00000517354 DDX12PQ92771 950 aa13.19□□□□□ -0.3
CPNE3-201ENST00000517354 ANO8Q9HCE9 1232 aaPredicted RBP13.18□□□□□ -0.3
CPNE3-201ENST00000517354 NUDT7P0C024 238 aa13.17□□□□□ -0.3
CPNE3-201ENST00000517354 TPRNQ4KMQ1 711 aa13.17□□□□□ -0.3
CPNE3-201ENST00000517354 PTGER2P43116 358 aa13.16□□□□□ -0.3
CPNE3-201ENST00000517354 KHSRPQ92945 711 aaKnown RBP eCLIP13.15□□□□□ -0.3
CPNE3-201ENST00000517354 GPR153Q6NV75 609 aa13.14□□□□□ -0.31
CPNE3-201ENST00000517354 HOXB1P14653 301 aaPredicted RBP13.1□□□□□ -0.31
CPNE3-201ENST00000517354 EPAS1Q99814 870 aa13.1□□□□□ -0.31
CPNE3-201ENST00000517354 PHF14O94880 888 aa13.09□□□□□ -0.31
CPNE3-201ENST00000517354 RBM26Q5T8P6 1007 aaKnown RBP13.09□□□□□ -0.31
CPNE3-201ENST00000517354 FAM163AQ96GL9 167 aaPredicted RBP13.09□□□□□ -0.31
CPNE3-201ENST00000517354 NUTM2FA1L443 756 aa13.08□□□□□ -0.32
CPNE3-201ENST00000517354 ZNF454Q8N9F8 522 aa13.08□□□□□ -0.32
CPNE3-201ENST00000517354 PRKCSHP14314 528 aaPredicted RBP13.07□□□□□ -0.32
CPNE3-201ENST00000517354 OSBPP22059 807 aa13.06□□□□□ -0.32
CPNE3-201ENST00000517354 TYW1BQ6NUM6 668 aa13.06□□□□□ -0.32
CPNE3-201ENST00000517354 KDM4FA0A1W2PPD8 638 aa13.05□□□□□ -0.32
CPNE3-201ENST00000517354 PSDA5PKW4 1024 aaPredicted RBP13.05□□□□□ -0.32
CPNE3-201ENST00000517354 GPIHBP1Q8IV16 184 aa13.05□□□□□ -0.32
CPNE3-201ENST00000517354 RBM33Q96EV2 1170 aaKnown RBP13.05□□□□□ -0.32
CPNE3-201ENST00000517354 JPH4Q96JJ6 628 aa13.05□□□□□ -0.32
CPNE3-201ENST00000517354 LHX6Q9UPM6 363 aa13.05□□□□□ -0.32
CPNE3-201ENST00000517354 FBXW7Q969H0 707 aa13.04□□□□□ -0.32
CPNE3-201ENST00000517354 PCDHGA10Q9Y5H3 936 aa13.04□□□□□ -0.32
CPNE3-201ENST00000517354 MAP3K7O43318 606 aa13.03□□□□□ -0.32
CPNE3-201ENST00000517354 FOSBP53539 338 aa13.02□□□□□ -0.33
CPNE3-201ENST00000517354 PPP4R3BQ5MIZ7 849 aa13.01□□□□□ -0.33
CPNE3-201ENST00000517354 ZDHHC16Q969W1 377 aa13.01□□□□□ -0.33
CPNE3-201ENST00000517354 ST18O60284 1047 aa13□□□□□ -0.33
CPNE3-201ENST00000517354 ZC3H15Q8WU90 426 aaKnown RBP13□□□□□ -0.33
CPNE3-201ENST00000517354 ERBB3P21860 1342 aa12.99□□□□□ -0.33
CPNE3-201ENST00000517354 EMP3P54852 163 aa12.97□□□□□ -0.33
CPNE3-201ENST00000517354 EN1Q05925 392 aaPredicted RBP12.97□□□□□ -0.33
CPNE3-201ENST00000517354 KRI1Q8N9T8 703 aaKnown RBP12.97□□□□□ -0.33
CPNE3-201ENST00000517354 FCHSD2O94868 740 aa12.95□□□□□ -0.34
CPNE3-201ENST00000517354 MARVELD3Q96A59 401 aa12.94□□□□□ -0.34
CPNE3-201ENST00000517354 PRIM1P49642 420 aaKnown RBP12.92□□□□□ -0.34
CPNE3-201ENST00000517354 C6orf132Q5T0Z8 1188 aa12.92□□□□□ -0.34
CPNE3-201ENST00000517354 KCNH8Q96L42 1107 aa12.92□□□□□ -0.34
CPNE3-201ENST00000517354 ADAM33Q9BZ11 813 aa12.91□□□□□ -0.34
CPNE3-201ENST00000517354 VARS2Q5ST30 1063 aaKnown RBP12.9□□□□□ -0.34
CPNE3-201ENST00000517354 FAM205CA6NFA0 338 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 337.5 ms