RNA–Protein interactions for RNA: ENST00000515753.1

HERC4-215, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 2

Gene HERC4, Length 589 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-215ENST00000515753 NLRP6P59044 892 aa10.1□□□□□ -0.79
HERC4-215ENST00000515753 DOK7Q18PE1 504 aa10.1□□□□□ -0.79
HERC4-215ENST00000515753 FBXO22Q8NEZ5 403 aa10.09□□□□□ -0.79
HERC4-215ENST00000515753 HOXB1P14653 301 aaPredicted RBP10.08□□□□□ -0.8
HERC4-215ENST00000515753 MFRPQ9BY79 579 aa10.08□□□□□ -0.8
HERC4-215ENST00000515753 KRTAP3-3Q9BYR6 98 aa10.08□□□□□ -0.8
HERC4-215ENST00000515753 KRTAP3-2Q9BYR7 98 aa10.08□□□□□ -0.8
HERC4-215ENST00000515753 ERBB3P21860 1342 aa10.05□□□□□ -0.8
HERC4-215ENST00000515753 RIMBP2O15034 1052 aa10.04□□□□□ -0.8
HERC4-215ENST00000515753 VARS2Q5ST30 1063 aaKnown RBP9.99□□□□□ -0.81
HERC4-215ENST00000515753 GPR153Q6NV75 609 aa9.98□□□□□ -0.81
HERC4-215ENST00000515753 ARSIQ5FYB1 569 aa9.97□□□□□ -0.81
HERC4-215ENST00000515753 KHSRPQ92945 711 aaKnown RBP eCLIP9.96□□□□□ -0.826e-12■■■■□ 20.9
HERC4-215ENST00000515753 ZSWIM6Q9HCJ5 1215 aa9.96□□□□□ -0.82
HERC4-215ENST00000515753 C2orf72A6NCS6 295 aa9.95□□□□□ -0.82
HERC4-215ENST00000515753 PPP1R37O75864 691 aa9.94□□□□□ -0.82
HERC4-215ENST00000515753 KIF3CO14782 793 aa9.92□□□□□ -0.82
HERC4-215ENST00000515753 ZNF687Q8N1G0 1237 aa9.88□□□□□ -0.83
HERC4-215ENST00000515753 TMC2Q8TDI7 906 aa9.87□□□□□ -0.83
HERC4-215ENST00000515753 ZNF316A6NFI3 1004 aaPredicted RBP9.85□□□□□ -0.83
HERC4-215ENST00000515753 NUDT7P0C024 238 aa9.85□□□□□ -0.83
HERC4-215ENST00000515753 CHGAP10645 457 aaKnown RBP9.84□□□□□ -0.83
HERC4-215ENST00000515753 HS6ST3Q8IZP7 471 aa9.84□□□□□ -0.83
HERC4-215ENST00000515753 PCDHGA4Q9Y5G9 962 aa9.82□□□□□ -0.84
HERC4-215ENST00000515753 ANKRD13DQ6ZTN6 518 aa9.8□□□□□ -0.84
HERC4-215ENST00000515753 LHX6Q9UPM6 363 aa9.79□□□□□ -0.84
HERC4-215ENST00000515753 SLC34A2O95436 690 aa9.78□□□□□ -0.84
HERC4-215ENST00000515753 RNF166Q96A37 237 aaPredicted RBP9.77□□□□□ -0.85
HERC4-215ENST00000515753 NKX1-1Q15270 411 aaPredicted RBP9.76□□□□□ -0.85
HERC4-215ENST00000515753 MYT1LQ9UL68 1186 aa9.76□□□□□ -0.85
HERC4-215ENST00000515753 AXIN2Q9Y2T1 843 aa9.75□□□□□ -0.85
HERC4-215ENST00000515753 PLPP6Q8IY26 295 aa9.74□□□□□ -0.85
HERC4-215ENST00000515753 POTEEQ6S8J3 1075 aa9.73□□□□□ -0.85
HERC4-215ENST00000515753 LSM11P83369 360 aaKnown RBP eCLIP9.72□□□□□ -0.85
HERC4-215ENST00000515753 FOXK1P85037 733 aa9.72□□□□□ -0.85
HERC4-215ENST00000515753 DSG2Q14126 1118 aa9.72□□□□□ -0.85
HERC4-215ENST00000515753 GPHNQ9NQX3 736 aaPredicted RBP9.72□□□□□ -0.85
HERC4-215ENST00000515753 PTCD2Q8WV60 388 aaKnown RBP9.69□□□□□ -0.86
HERC4-215ENST00000515753 KDM4FA0A1W2PPD8 638 aa9.67□□□□□ -0.86
HERC4-215ENST00000515753 PBX2P40425 430 aa9.66□□□□□ -0.86
HERC4-215ENST00000515753 DNAJC5Q9H3Z4 198 aa9.66□□□□□ -0.86
HERC4-215ENST00000515753 PTGER2P43116 358 aa9.65□□□□□ -0.86
HERC4-215ENST00000515753 DCAF8L2P0C7V8 631 aa9.63□□□□□ -0.87
HERC4-215ENST00000515753 UPF1Q92900 1129 aaKnown RBP eCLIP9.63□□□□□ -0.87
HERC4-215ENST00000515753 ARHGAP33O14559 1287 aa9.62□□□□□ -0.87
HERC4-215ENST00000515753 TBC1D12O60347 775 aa9.61□□□□□ -0.87
HERC4-215ENST00000515753 PSEN2P49810 448 aa9.61□□□□□ -0.87
HERC4-215ENST00000515753 RYDENQ9NUL5 291 aaKnown RBP9.61□□□□□ -0.87
HERC4-215ENST00000515753 PSDA5PKW4 1024 aaPredicted RBP9.6□□□□□ -0.87
HERC4-215ENST00000515753 DMRTA1Q5VZB9 504 aa9.6□□□□□ -0.87
HERC4-215ENST00000515753 CRISPLD2Q9H0B8 497 aa9.6□□□□□ -0.87
HERC4-215ENST00000515753 GTPBP6O43824 516 aaPredicted RBP9.59□□□□□ -0.87
HERC4-215ENST00000515753 ADGRD1Q6QNK2 874 aa9.59□□□□□ -0.87
HERC4-215ENST00000515753 NCKAP5LQ9HCH0 1330 aa9.58□□□□□ -0.88
HERC4-215ENST00000515753 PPP4R3BQ5MIZ7 849 aa9.58□□□□□ -0.88
HERC4-215ENST00000515753 PPP1R15BQ5SWA1 713 aa9.58□□□□□ -0.88
HERC4-215ENST00000515753 OXER1Q8TDS5 423 aa9.57□□□□□ -0.88
HERC4-215ENST00000515753 PDE4AP27815 886 aa9.54□□□□□ -0.88
HERC4-215ENST00000515753 KCNK17Q96T54 332 aa9.54□□□□□ -0.88
HERC4-215ENST00000515753 LARP6Q9BRS8 491 aaKnown RBP9.54□□□□□ -0.88
HERC4-215ENST00000515753 ZNF454Q8N9F8 522 aa9.52□□□□□ -0.89
HERC4-215ENST00000515753 TK2O00142 265 aa9.5□□□□□ -0.89
HERC4-215ENST00000515753 HRO43593 1189 aa9.5□□□□□ -0.89
HERC4-215ENST00000515753 DDX27Q96GQ7 796 aaKnown RBP9.49□□□□□ -0.89
HERC4-215ENST00000515753 EVI5O60447 810 aa9.47□□□□□ -0.89
HERC4-215ENST00000515753 CADPS2Q86UW7 1296 aa9.47□□□□□ -0.89
HERC4-215ENST00000515753 KCNH8Q96L42 1107 aa9.47□□□□□ -0.89
HERC4-215ENST00000515753 KCTD12Q96CX2 325 aaKnown RBP9.46□□□□□ -0.9
HERC4-215ENST00000515753 STAC3Q96MF2 364 aa9.46□□□□□ -0.9
HERC4-215ENST00000515753 HCSTQ9UBK5 93 aa9.46□□□□□ -0.9
HERC4-215ENST00000515753 FOSBP53539 338 aa9.45□□□□□ -0.9
HERC4-215ENST00000515753 MAP3K9P80192 1104 aa9.44□□□□□ -0.9
HERC4-215ENST00000515753 BCL2L12Q9HB09 334 aa9.44□□□□□ -0.9
HERC4-215ENST00000515753 ANO8Q9HCE9 1232 aaPredicted RBP9.44□□□□□ -0.9
HERC4-215ENST00000515753 EMILIN3Q9NT22 766 aa9.44□□□□□ -0.9
HERC4-215ENST00000515753 VPS9D1Q9Y2B5 631 aa9.44□□□□□ -0.9
HERC4-215ENST00000515753 MFSD10Q14728 455 aa9.43□□□□□ -0.9
HERC4-215ENST00000515753 PLA2G2EQ9NZK7 142 aa9.43□□□□□ -0.9
HERC4-215ENST00000515753 PTPREP23469 700 aa9.41□□□□□ -0.9
HERC4-215ENST00000515753 JPH4Q96JJ6 628 aa9.41□□□□□ -0.9
HERC4-215ENST00000515753 ADAM33Q9BZ11 813 aa9.41□□□□□ -0.9
HERC4-215ENST00000515753 AMER1Q5JTC6 1135 aaPredicted RBP9.4□□□□□ -0.9
HERC4-215ENST00000515753 ZDHHC16Q969W1 377 aa9.4□□□□□ -0.9
HERC4-215ENST00000515753 PTPN5P54829 565 aa9.38□□□□□ -0.91
HERC4-215ENST00000515753 ZBED2Q9BTP6 218 aa9.37□□□□□ -0.91
HERC4-215ENST00000515753 BHMG1C9JSJ3 638 aaPredicted RBP9.35□□□□□ -0.91
HERC4-215ENST00000515753 SLC4A5Q9BY07 1137 aa9.35□□□□□ -0.91
HERC4-215ENST00000515753 PCDHGA10Q9Y5H3 936 aa9.35□□□□□ -0.91
HERC4-215ENST00000515753 MRPL50Q8N5N7 158 aaKnown RBP9.32□□□□□ -0.92
HERC4-215ENST00000515753 GOLGA8CPA6NN73 597 aa9.31□□□□□ -0.92
HERC4-215ENST00000515753 DPYSL4O14531 572 aa9.31□□□□□ -0.92
HERC4-215ENST00000515753 COL9A1P20849 921 aa9.3□□□□□ -0.92
HERC4-215ENST00000515753 PROX2Q3B8N5 592 aa9.3□□□□□ -0.92
HERC4-215ENST00000515753 BBXQ8WY36 941 aaPredicted RBP9.3□□□□□ -0.92
HERC4-215ENST00000515753 WNT2BQ93097 391 aa9.3□□□□□ -0.92
HERC4-215ENST00000515753 THSD4Q6ZMP0 1018 aa9.29□□□□□ -0.92
HERC4-215ENST00000515753 PPP1R3GB7ZBB8 358 aa9.28□□□□□ -0.92
HERC4-215ENST00000515753 PHF14O94880 888 aa9.28□□□□□ -0.92
HERC4-215ENST00000515753 CAMK2BQ13554 666 aa9.28□□□□□ -0.92
HERC4-215ENST00000515753 TYW1BQ6NUM6 668 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms