RNA–Protein interactions for RNA: ENST00000515311.5

LSM6-207, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 4

Gene LSM6, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-207ENST00000515311 PPRC1Q5VV67 1664 aaKnown RBP32.44■■■□□ 2.78
LSM6-207ENST00000515311 TSPOAP1O95153 1857 aa32.43■■■□□ 2.78
LSM6-207ENST00000515311 CFAP74Q9C0B2 1584 aa32.41■■■□□ 2.78
LSM6-207ENST00000515311 ARHGAP5Q13017 1502 aa32.4■■■□□ 2.78
LSM6-207ENST00000515311 TEX14Q8IWB6 1497 aa32.38■■■□□ 2.77
LSM6-207ENST00000515311 MIA2Q96PC5 1412 aa32.37■■■□□ 2.77
LSM6-207ENST00000515311 FANCAO15360 1455 aa32.35■■■□□ 2.77
LSM6-207ENST00000515311 CFDP1Q9UEE9 299 aaPredicted RBP32.34■■■□□ 2.77
LSM6-207ENST00000515311 NEO1Q92859 1461 aa32.33■■■□□ 2.77
LSM6-207ENST00000515311 FGD6Q6ZV73 1430 aa32.33■■■□□ 2.77
LSM6-207ENST00000515311 EFCAB2Q5VUJ9 269 aa32.32■■■□□ 2.76
LSM6-207ENST00000515311 SAMD9LQ8IVG5 1584 aa32.28■■■□□ 2.76
LSM6-207ENST00000515311 PTPN23Q9H3S7 1636 aa32.27■■■□□ 2.76
LSM6-207ENST00000515311 TCOF1Q13428 1488 aaKnown RBP32.24■■■□□ 2.75
LSM6-207ENST00000515311 AKNAQ7Z591 1439 aa32.24■■■□□ 2.75
LSM6-207ENST00000515311 CAMSAP2Q08AD1 1489 aa32.23■■■□□ 2.75
LSM6-207ENST00000515311 PLEKHH2Q8IVE3 1493 aa32.23■■■□□ 2.75
LSM6-207ENST00000515311 ABCC1P33527 1531 aa32.23■■■□□ 2.75
LSM6-207ENST00000515311 RRBP1Q9P2E9 1410 aaKnown RBP32.23■■■□□ 2.75
LSM6-207ENST00000515311 KIAA1107Q9UPP5 1409 aa32.19■■■□□ 2.74
LSM6-207ENST00000515311 ADGRL1O94910 1474 aa32.19■■■□□ 2.74
LSM6-207ENST00000515311 ZNF777Q9ULD5 760 aaPredicted RBP32.19■■■□□ 2.74
LSM6-207ENST00000515311 ZNF644Q9H582 1327 aaPredicted RBP32.17■■■□□ 2.74
LSM6-207ENST00000515311 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.16■■■□□ 2.74
LSM6-207ENST00000515311 SYCP2Q9BX26 1530 aa32.15■■■□□ 2.74
LSM6-207ENST00000515311 ARHGEF5Q12774 1597 aa32.12■■■□□ 2.73
LSM6-207ENST00000515311 ARHGEF12Q9NZN5 1544 aa32.11■■■□□ 2.73
LSM6-207ENST00000515311 SCAPERQ9BY12 1400 aa32.11■■■□□ 2.73
LSM6-207ENST00000515311 MBD5Q9P267 1494 aa32.1■■■□□ 2.73
LSM6-207ENST00000515311 RICTORQ6R327 1708 aa32.07■■■□□ 2.72
LSM6-207ENST00000515311 DENND4BO75064 1496 aaPredicted RBP32.07■■■□□ 2.72
LSM6-207ENST00000515311 FAM50AQ14320 339 aaKnown RBP32.06■■■□□ 2.72
LSM6-207ENST00000515311 DNMT1P26358 1616 aaKnown RBP32.06■■■□□ 2.72
LSM6-207ENST00000515311 POGZQ7Z3K3 1410 aa32.06■■■□□ 2.72
LSM6-207ENST00000515311 ZNF518AQ6AHZ1 1483 aa32.04■■■□□ 2.72
LSM6-207ENST00000515311 CCDC141Q6ZP82 1450 aa32.03■■■□□ 2.72
LSM6-207ENST00000515311 HNRNPMP52272 730 aaKnown RBP eCLIP32.03■■■□□ 2.72
LSM6-207ENST00000515311 RSPH4AQ5TD94 716 aa32.03■■■□□ 2.72
LSM6-207ENST00000515311 KDM6BO15054 1643 aa32.03■■■□□ 2.72
LSM6-207ENST00000515311 FRMPD1Q5SYB0 1578 aa32.02■■■□□ 2.72
LSM6-207ENST00000515311 CROCC2H7BZ55 1655 aa32.02■■■□□ 2.72
LSM6-207ENST00000515311 TRAPPC8Q9Y2L5 1435 aa32.01■■■□□ 2.72
LSM6-207ENST00000515311 COL17A1Q9UMD9 1497 aaPredicted RBP32.01■■■□□ 2.71
LSM6-207ENST00000515311 KDM5CP41229 1560 aa32.01■■■□□ 2.71
LSM6-207ENST00000515311 DAPK1P53355 1430 aa31.98■■■□□ 2.71
LSM6-207ENST00000515311 ABCC5O15440 1437 aa31.97■■■□□ 2.71
LSM6-207ENST00000515311 ZMYM4Q5VZL5 1548 aa31.96■■■□□ 2.71
LSM6-207ENST00000515311 SHANK2Q9UPX8 1470 aa31.96■■■□□ 2.71
LSM6-207ENST00000515311 MAST1Q9Y2H9 1570 aa31.94■■■□□ 2.7
LSM6-207ENST00000515311 RAPGEF3O95398 923 aa31.93■■■□□ 2.7
LSM6-207ENST00000515311 AFAP1Q8N556 730 aa31.92■■■□□ 2.7
LSM6-207ENST00000515311 HECW2Q9P2P5 1572 aa31.91■■■□□ 2.7
LSM6-207ENST00000515311 INO80Q9ULG1 1556 aaPredicted RBP31.91■■■□□ 2.7
LSM6-207ENST00000515311 MLH3Q9UHC1 1453 aa31.89■■■□□ 2.7
LSM6-207ENST00000515311 ZFYVE16Q7Z3T8 1539 aa31.88■■■□□ 2.69
LSM6-207ENST00000515311 ADGBQ8N7X0 1667 aa31.87■■■□□ 2.69
LSM6-207ENST00000515311 C9orf84Q5VXU9 1444 aa31.87■■■□□ 2.69
LSM6-207ENST00000515311 TSPY4P0CV99 314 aa31.87■■■□□ 2.69
LSM6-207ENST00000515311 TSPY10P0CW01 314 aa31.87■■■□□ 2.69
LSM6-207ENST00000515311 MAGI2Q86UL8 1455 aa31.86■■■□□ 2.69
LSM6-207ENST00000515311 RTEL1-TNFRSF6BF6WH68 1400 aa31.86■■■□□ 2.69
LSM6-207ENST00000515311 ATP7AQ04656 1500 aa31.85■■■□□ 2.69
LSM6-207ENST00000515311 SPAG9O60271 1321 aaKnown RBP31.85■■■□□ 2.69
LSM6-207ENST00000515311 KIDINS220Q9ULH0 1771 aa31.85■■■□□ 2.69
LSM6-207ENST00000515311 PTPRKQ15262 1439 aa31.84■■■□□ 2.69
LSM6-207ENST00000515311 TRIM26Q12899 539 aaPredicted RBP31.84■■■□□ 2.69
LSM6-207ENST00000515311 ADGRL2O95490 1459 aa31.82■■■□□ 2.68
LSM6-207ENST00000515311 PLXNC1O60486 1568 aa31.81■■■□□ 2.68
LSM6-207ENST00000515311 ITGAEP38570 1179 aa31.8■■■□□ 2.68
LSM6-207ENST00000515311 ROCK1Q13464 1354 aa31.78■■■□□ 2.68
LSM6-207ENST00000515311 ARHGEF40Q8TER5 1519 aa31.77■■■□□ 2.68
LSM6-207ENST00000515311 ABCA6Q8N139 1617 aa31.76■■■□□ 2.67
LSM6-207ENST00000515311 DIP2CQ9Y2E4 1556 aa31.74■■■□□ 2.67
LSM6-207ENST00000515311 ANKRD30AQ9BXX3 1397 aa31.74■■■□□ 2.67
LSM6-207ENST00000515311 NCOA1Q15788 1441 aa31.74■■■□□ 2.67
LSM6-207ENST00000515311 CHIC2Q9UKJ5 165 aa31.72■■■□□ 2.67
LSM6-207ENST00000515311 YEATS2Q9ULM3 1422 aa31.72■■■□□ 2.67
LSM6-207ENST00000515311 MYT1LQ9UL68 1186 aa31.71■■■□□ 2.67
LSM6-207ENST00000515311 REREQ9P2R6 1566 aa31.67■■■□□ 2.66
LSM6-207ENST00000515311 KIF15Q9NS87 1388 aa31.67■■■□□ 2.66
LSM6-207ENST00000515311 GCC2Q8IWJ2 1684 aa31.66■■■□□ 2.66
LSM6-207ENST00000515311 ATP10AO60312 1499 aa31.65■■■□□ 2.66
LSM6-207ENST00000515311 DUOX2Q9NRD8 1548 aa31.65■■■□□ 2.66
LSM6-207ENST00000515311 HFM1A2PYH4 1435 aa31.63■■■□□ 2.65
LSM6-207ENST00000515311 A2MP01023 1474 aa31.62■■■□□ 2.65
LSM6-207ENST00000515311 RRP7BPQ9NSQ0 103 aa31.61■■■□□ 2.65
LSM6-207ENST00000515311 NAIPQ13075 1403 aa31.58■■■□□ 2.65
LSM6-207ENST00000515311 DHX29Q7Z478 1369 aaKnown RBP31.58■■■□□ 2.65
LSM6-207ENST00000515311 ERBINQ96RT1 1412 aa31.57■■■□□ 2.64
LSM6-207ENST00000515311 EIF2AK4Q9P2K8 1649 aaKnown RBP31.57■■■□□ 2.64
LSM6-207ENST00000515311 BCORL1Q5H9F3 1711 aa31.55■■■□□ 2.64
LSM6-207ENST00000515311 ANKRD50Q9ULJ7 1429 aa31.53■■■□□ 2.64
LSM6-207ENST00000515311 AGLP35573 1532 aa31.53■■■□□ 2.64
LSM6-207ENST00000515311 SIGLEC1Q9BZZ2 1709 aa31.52■■■□□ 2.64
LSM6-207ENST00000515311 SETD5Q9C0A6 1442 aa31.48■■■□□ 2.63
LSM6-207ENST00000515311 PCGF6Q9BYE7 350 aa31.46■■■□□ 2.63
LSM6-207ENST00000515311 RNF17Q9BXT8 1623 aaKnown RBP31.44■■■□□ 2.62
LSM6-207ENST00000515311 DEPDC5O75140 1603 aa31.43■■■□□ 2.62
LSM6-207ENST00000515311 UNC13BO14795 1591 aa31.39■■■□□ 2.61
LSM6-207ENST00000515311 KIF3BO15066 747 aa31.37■■■□□ 2.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms