RNA–Protein interactions for RNA: ENST00000513957.1

NEDD4-210, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 2

Gene NEDD4, Length 591 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-210ENST00000513957 LOC105371045A0A1W2PR82 267 aa13.06□□□□□ -0.32
NEDD4-210ENST00000513957 NCBP3Q53F19 620 aaKnown RBP13.06□□□□□ -0.32
NEDD4-210ENST00000513957 EHBP1L1Q8N3D4 1523 aa13.05□□□□□ -0.32
NEDD4-210ENST00000513957 PREX2Q70Z35 1606 aa13.05□□□□□ -0.32
NEDD4-210ENST00000513957 MAP3K1Q13233 1512 aa13.04□□□□□ -0.32
NEDD4-210ENST00000513957 CDC42BPAQ5VT25 1732 aa13.03□□□□□ -0.32
NEDD4-210ENST00000513957 PLCH2O75038 1416 aa13.03□□□□□ -0.32
NEDD4-210ENST00000513957 FANCAO15360 1455 aa13.03□□□□□ -0.32
NEDD4-210ENST00000513957 TIAM1Q13009 1591 aa13.03□□□□□ -0.32
NEDD4-210ENST00000513957 ITSN2Q9NZM3 1697 aa13.02□□□□□ -0.33
NEDD4-210ENST00000513957 CDC42BPBQ9Y5S2 1711 aa13.02□□□□□ -0.33
NEDD4-210ENST00000513957 RICTORQ6R327 1708 aa13.01□□□□□ -0.33
NEDD4-210ENST00000513957 SUPT6HQ7KZ85 1726 aaKnown RBP13□□□□□ -0.33
NEDD4-210ENST00000513957 RTN4Q9NQC3 1192 aaKnown RBP13□□□□□ -0.33
NEDD4-210ENST00000513957 COL17A1Q9UMD9 1497 aaPredicted RBP12.99□□□□□ -0.33
NEDD4-210ENST00000513957 MTUS2Q5JR59 1369 aa12.99□□□□□ -0.33
NEDD4-210ENST00000513957 PPP4R3CPQ6ZMV5 832 aa12.99□□□□□ -0.33
NEDD4-210ENST00000513957 ARHGAP5Q13017 1502 aa12.98□□□□□ -0.33
NEDD4-210ENST00000513957 AKNAQ7Z591 1439 aa12.97□□□□□ -0.33
NEDD4-210ENST00000513957 FRMPD1Q5SYB0 1578 aa12.97□□□□□ -0.33
NEDD4-210ENST00000513957 ZMYM4Q5VZL5 1548 aa12.97□□□□□ -0.33
NEDD4-210ENST00000513957 DENND4BO75064 1496 aaPredicted RBP12.96□□□□□ -0.34
NEDD4-210ENST00000513957 ADGRL1O94910 1474 aa12.96□□□□□ -0.34
NEDD4-210ENST00000513957 LRRC9Q6ZRR7 1453 aa12.94□□□□□ -0.34
NEDD4-210ENST00000513957 EFCAB2Q5VUJ9 269 aa12.94□□□□□ -0.34
NEDD4-210ENST00000513957 ABCC1P33527 1531 aa12.93□□□□□ -0.34
NEDD4-210ENST00000513957 MAGI2Q86UL8 1455 aa12.93□□□□□ -0.34
NEDD4-210ENST00000513957 ARHGEF40Q8TER5 1519 aa12.93□□□□□ -0.34
NEDD4-210ENST00000513957 GPATCH8Q9UKJ3 1502 aaKnown RBP12.93□□□□□ -0.34
NEDD4-210ENST00000513957 ZNF518AQ6AHZ1 1483 aa12.92□□□□□ -0.34
NEDD4-210ENST00000513957 KDM5CP41229 1560 aa12.92□□□□□ -0.34
NEDD4-210ENST00000513957 POGZQ7Z3K3 1410 aa12.92□□□□□ -0.34
NEDD4-210ENST00000513957 PLEKHH2Q8IVE3 1493 aa12.91□□□□□ -0.34
NEDD4-210ENST00000513957 CCNB3Q8WWL7 1395 aa12.9□□□□□ -0.34
NEDD4-210ENST00000513957 NCOA2Q15596 1464 aa12.9□□□□□ -0.34
NEDD4-210ENST00000513957 SAMD9LQ8IVG5 1584 aa12.9□□□□□ -0.35
NEDD4-210ENST00000513957 SCAPERQ9BY12 1400 aa12.89□□□□□ -0.35
NEDD4-210ENST00000513957 HECW2Q9P2P5 1572 aa12.89□□□□□ -0.35
NEDD4-210ENST00000513957 APLP2Q06481 763 aa12.88□□□□□ -0.35
NEDD4-210ENST00000513957 ZFYVE16Q7Z3T8 1539 aa12.88□□□□□ -0.35
NEDD4-210ENST00000513957 KIAA1107Q9UPP5 1409 aa12.88□□□□□ -0.35
NEDD4-210ENST00000513957 SYCP2Q9BX26 1530 aa12.85□□□□□ -0.35
NEDD4-210ENST00000513957 RAPGEF3O95398 923 aa12.85□□□□□ -0.35
NEDD4-210ENST00000513957 REREQ9P2R6 1566 aa12.85□□□□□ -0.35
NEDD4-210ENST00000513957 MLH3Q9UHC1 1453 aa12.85□□□□□ -0.35
NEDD4-210ENST00000513957 CFDP1Q9UEE9 299 aaPredicted RBP12.84□□□□□ -0.35
NEDD4-210ENST00000513957 MIA2Q96PC5 1412 aa12.83□□□□□ -0.36
NEDD4-210ENST00000513957 INO80Q9ULG1 1556 aaPredicted RBP12.82□□□□□ -0.36
NEDD4-210ENST00000513957 ARHGEF12Q9NZN5 1544 aa12.82□□□□□ -0.36
NEDD4-210ENST00000513957 ARHGEF5Q12774 1597 aa12.81□□□□□ -0.36
NEDD4-210ENST00000513957 KIDINS220Q9ULH0 1771 aa12.81□□□□□ -0.36
NEDD4-210ENST00000513957 MYOM3Q5VTT5 1437 aa12.81□□□□□ -0.36
NEDD4-210ENST00000513957 CAMSAP2Q08AD1 1489 aa12.8□□□□□ -0.36
NEDD4-210ENST00000513957 BCORL1Q5H9F3 1711 aa12.8□□□□□ -0.36
NEDD4-210ENST00000513957 DIP2CQ9Y2E4 1556 aa12.8□□□□□ -0.36
NEDD4-210ENST00000513957 ABCA6Q8N139 1617 aa12.8□□□□□ -0.36
NEDD4-210ENST00000513957 C9orf84Q5VXU9 1444 aa12.79□□□□□ -0.36
NEDD4-210ENST00000513957 TRAPPC8Q9Y2L5 1435 aa12.79□□□□□ -0.36
NEDD4-210ENST00000513957 ATP10AO60312 1499 aa12.79□□□□□ -0.36
NEDD4-210ENST00000513957 ADGBQ8N7X0 1667 aa12.79□□□□□ -0.36
NEDD4-210ENST00000513957 ATP7AQ04656 1500 aa12.78□□□□□ -0.36
NEDD4-210ENST00000513957 ADAMTSL3P82987 1691 aa12.78□□□□□ -0.36
NEDD4-210ENST00000513957 KANK4Q5T7N3 995 aaPredicted RBP12.78□□□□□ -0.36
NEDD4-210ENST00000513957 RSPH4AQ5TD94 716 aa12.78□□□□□ -0.36
NEDD4-210ENST00000513957 YEATS2Q9ULM3 1422 aa12.78□□□□□ -0.36
NEDD4-210ENST00000513957 CCDC141Q6ZP82 1450 aa12.78□□□□□ -0.36
NEDD4-210ENST00000513957 MBD5Q9P267 1494 aa12.78□□□□□ -0.36
NEDD4-210ENST00000513957 RTEL1-TNFRSF6BF6WH68 1400 aa12.77□□□□□ -0.37
NEDD4-210ENST00000513957 CACNB1Q02641 598 aaPredicted RBP12.76□□□□□ -0.37
NEDD4-210ENST00000513957 ZNF777Q9ULD5 760 aaPredicted RBP12.76□□□□□ -0.37
NEDD4-210ENST00000513957 AGLP35573 1532 aa12.76□□□□□ -0.37
NEDD4-210ENST00000513957 MAST1Q9Y2H9 1570 aa12.76□□□□□ -0.37
NEDD4-210ENST00000513957 PTPN23Q9H3S7 1636 aa12.76□□□□□ -0.37
NEDD4-210ENST00000513957 CROCC2H7BZ55 1655 aa12.76□□□□□ -0.37
NEDD4-210ENST00000513957 AFAP1Q8N556 730 aa12.75□□□□□ -0.37
NEDD4-210ENST00000513957 SIGLEC1Q9BZZ2 1709 aa12.75□□□□□ -0.37
NEDD4-210ENST00000513957 PLXNC1O60486 1568 aa12.74□□□□□ -0.37
NEDD4-210ENST00000513957 NPM3O75607 178 aaKnown RBP12.74□□□□□ -0.37
NEDD4-210ENST00000513957 FER1L4A9Z1Z3 1794 aa12.74□□□□□ -0.37
NEDD4-210ENST00000513957 TCOF1Q13428 1488 aaKnown RBP12.73□□□□□ -0.37
NEDD4-210ENST00000513957 FGD6Q6ZV73 1430 aa12.72□□□□□ -0.37
NEDD4-210ENST00000513957 SPAG9O60271 1321 aaKnown RBP12.72□□□□□ -0.37
NEDD4-210ENST00000513957 ZBTB22O15209 634 aa12.72□□□□□ -0.37
NEDD4-210ENST00000513957 DNMT1P26358 1616 aaKnown RBP12.72□□□□□ -0.37
NEDD4-210ENST00000513957 SHANK2Q9UPX8 1470 aa12.72□□□□□ -0.37
NEDD4-210ENST00000513957 MADDQ8WXG6 1647 aa12.71□□□□□ -0.37
NEDD4-210ENST00000513957 KDM4FA0A1W2PPD8 638 aa12.71□□□□□ -0.37
NEDD4-210ENST00000513957 HNRNPMP52272 730 aaKnown RBP eCLIP12.71□□□□□ -0.37
NEDD4-210ENST00000513957 ZNF644Q9H582 1327 aaPredicted RBP12.69□□□□□ -0.38
NEDD4-210ENST00000513957 MYT1LQ9UL68 1186 aa12.69□□□□□ -0.38
NEDD4-210ENST00000513957 A2MP01023 1474 aa12.69□□□□□ -0.38
NEDD4-210ENST00000513957 FAM135AQ9P2D6 1515 aa12.68□□□□□ -0.38
NEDD4-210ENST00000513957 ARID4BQ4LE39 1312 aaPredicted RBP12.68□□□□□ -0.38
NEDD4-210ENST00000513957 RIMS1Q86UR5 1692 aaKnown RBP12.68□□□□□ -0.38
NEDD4-210ENST00000513957 EIF2AK4Q9P2K8 1649 aaKnown RBP12.68□□□□□ -0.38
NEDD4-210ENST00000513957 MROH2AA6NES4 1674 aa12.67□□□□□ -0.38
NEDD4-210ENST00000513957 TSPY4P0CV99 314 aa12.66□□□□□ -0.38
NEDD4-210ENST00000513957 TSPY10P0CW01 314 aa12.66□□□□□ -0.38
NEDD4-210ENST00000513957 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.65□□□□□ -0.38
NEDD4-210ENST00000513957 PTPRMP28827 1452 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms