RNA–Protein interactions for RNA: ENST00000513600.5

TRAPPC11-210, Transcript of trafficking protein particle complex 11, humanhuman

TSL 3

Gene TRAPPC11, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC11-210ENST00000513600 TMC2Q8TDI7 906 aa15.87■□□□□ 0.13
TRAPPC11-210ENST00000513600 KIF3CO14782 793 aa15.84■□□□□ 0.13
TRAPPC11-210ENST00000513600 C2orf72A6NCS6 295 aa15.83■□□□□ 0.12
TRAPPC11-210ENST00000513600 GPHNQ9NQX3 736 aaPredicted RBP15.81■□□□□ 0.12
TRAPPC11-210ENST00000513600 SNPHO15079 494 aa15.8■□□□□ 0.12
TRAPPC11-210ENST00000513600 PDE4AP27815 886 aa15.8■□□□□ 0.12
TRAPPC11-210ENST00000513600 CRISPLD2Q9H0B8 497 aa15.79■□□□□ 0.12
TRAPPC11-210ENST00000513600 CADPS2Q86UW7 1296 aa15.78■□□□□ 0.12
TRAPPC11-210ENST00000513600 NCKAP5LQ9HCH0 1330 aa15.75■□□□□ 0.11
TRAPPC11-210ENST00000513600 TSHZ2Q9NRE2 1034 aa15.73■□□□□ 0.11
TRAPPC11-210ENST00000513600 FOXK1P85037 733 aa15.72■□□□□ 0.11
TRAPPC11-210ENST00000513600 LARP6Q9BRS8 491 aaKnown RBP15.71■□□□□ 0.11
TRAPPC11-210ENST00000513600 DSG2Q14126 1118 aa15.69■□□□□ 0.1
TRAPPC11-210ENST00000513600 DOK7Q18PE1 504 aa15.69■□□□□ 0.1
TRAPPC11-210ENST00000513600 MFSD10Q14728 455 aa15.67■□□□□ 0.1
TRAPPC11-210ENST00000513600 PLPP6Q8IY26 295 aa15.67■□□□□ 0.1
TRAPPC11-210ENST00000513600 DDX27Q96GQ7 796 aaKnown RBP15.67■□□□□ 0.1
TRAPPC11-210ENST00000513600 HOXB3P14651 431 aaPredicted RBP15.66■□□□□ 0.1
TRAPPC11-210ENST00000513600 PPP1R15BQ5SWA1 713 aa15.66■□□□□ 0.1
TRAPPC11-210ENST00000513600 HAP1P54257 671 aaPredicted RBP15.64■□□□□ 0.09
TRAPPC11-210ENST00000513600 FAM163AQ96GL9 167 aaPredicted RBP15.64■□□□□ 0.09
TRAPPC11-210ENST00000513600 RIMBP2O15034 1052 aa15.63■□□□□ 0.09
TRAPPC11-210ENST00000513600 ZNF710Q8N1W2 664 aa15.62■□□□□ 0.09
TRAPPC11-210ENST00000513600 SLC34A2O95436 690 aa15.6■□□□□ 0.09
TRAPPC11-210ENST00000513600 ZSWIM6Q9HCJ5 1215 aa15.59■□□□□ 0.09
TRAPPC11-210ENST00000513600 ST18O60284 1047 aa15.57■□□□□ 0.08
TRAPPC11-210ENST00000513600 WDR70Q9NW82 654 aa15.57■□□□□ 0.08
TRAPPC11-210ENST00000513600 LCE2DQ5TA82 110 aaPredicted RBP15.51■□□□□ 0.07
TRAPPC11-210ENST00000513600 PTCD2Q8WV60 388 aaKnown RBP15.51■□□□□ 0.07
TRAPPC11-210ENST00000513600 TBC1D12O60347 775 aa15.49■□□□□ 0.07
TRAPPC11-210ENST00000513600 HOXB1P14653 301 aaPredicted RBP15.49■□□□□ 0.07
TRAPPC11-210ENST00000513600 GPR153Q6NV75 609 aa15.49■□□□□ 0.07
TRAPPC11-210ENST00000513600 CAMK2BQ13554 666 aa15.48■□□□□ 0.07
TRAPPC11-210ENST00000513600 PCDHGA4Q9Y5G9 962 aa15.48■□□□□ 0.07
TRAPPC11-210ENST00000513600 ARSIQ5FYB1 569 aa15.46■□□□□ 0.07
TRAPPC11-210ENST00000513600 OXER1Q8TDS5 423 aa15.46■□□□□ 0.07
TRAPPC11-210ENST00000513600 E2F4Q16254 413 aa15.45■□□□□ 0.06
TRAPPC11-210ENST00000513600 UPF1Q92900 1129 aaKnown RBP eCLIP15.43■□□□□ 0.06
TRAPPC11-210ENST00000513600 VSIG10Q8N0Z9 540 aa15.42■□□□□ 0.06
TRAPPC11-210ENST00000513600 EMILIN3Q9NT22 766 aa15.42■□□□□ 0.06
TRAPPC11-210ENST00000513600 EMP3P54852 163 aa15.39■□□□□ 0.05
TRAPPC11-210ENST00000513600 KHSRPQ92945 711 aaKnown RBP eCLIP15.39■□□□□ 0.05
TRAPPC11-210ENST00000513600 MARVELD3Q96A59 401 aa15.39■□□□□ 0.05
TRAPPC11-210ENST00000513600 MAP3K9P80192 1104 aa15.38■□□□□ 0.05
TRAPPC11-210ENST00000513600 NUDT7P0C024 238 aa15.37■□□□□ 0.05
TRAPPC11-210ENST00000513600 KDM2AQ9Y2K7 1162 aa15.36■□□□□ 0.05
TRAPPC11-210ENST00000513600 POTEMA6NI47 508 aa15.33■□□□□ 0.04
TRAPPC11-210ENST00000513600 POTEGQ6S5H5 508 aa15.33■□□□□ 0.04
TRAPPC11-210ENST00000513600 KDM4FA0A1W2PPD8 638 aa15.32■□□□□ 0.04
TRAPPC11-210ENST00000513600 ARIH1Q9Y4X5 557 aaPredicted RBP15.32■□□□□ 0.04
TRAPPC11-210ENST00000513600 ZNF316A6NFI3 1004 aaPredicted RBP15.31■□□□□ 0.04
TRAPPC11-210ENST00000513600 DPYSL4O14531 572 aa15.3■□□□□ 0.04
TRAPPC11-210ENST00000513600 ERBB3P21860 1342 aa15.3■□□□□ 0.04
TRAPPC11-210ENST00000513600 P3H3Q8IVL6 736 aa15.3■□□□□ 0.04
TRAPPC11-210ENST00000513600 EVI5O60447 810 aa15.29■□□□□ 0.04
TRAPPC11-210ENST00000513600 FAM205CA6NFA0 338 aa15.28■□□□□ 0.04
TRAPPC11-210ENST00000513600 KCNV2Q8TDN2 545 aa15.26■□□□□ 0.03
TRAPPC11-210ENST00000513600 ANO8Q9HCE9 1232 aaPredicted RBP15.26■□□□□ 0.03
TRAPPC11-210ENST00000513600 LHX6Q9UPM6 363 aa15.26■□□□□ 0.03
TRAPPC11-210ENST00000513600 ARHGEF1Q92888 912 aaKnown RBP15.25■□□□□ 0.03
TRAPPC11-210ENST00000513600 PSDA5PKW4 1024 aaPredicted RBP15.24■□□□□ 0.03
TRAPPC11-210ENST00000513600 HS3ST6Q96QI5 342 aa15.24■□□□□ 0.03
TRAPPC11-210ENST00000513600 SPDYE16A6NNV3 312 aaPredicted RBP15.23■□□□□ 0.03
TRAPPC11-210ENST00000513600 VARS2Q5ST30 1063 aaKnown RBP15.23■□□□□ 0.03
TRAPPC11-210ENST00000513600 PDIA6Q15084 440 aa15.21■□□□□ 0.03
TRAPPC11-210ENST00000513600 POTEB3A0JP26 581 aa15.18■□□□□ 0.02
TRAPPC11-210ENST00000513600 POTEBQ6S5H4 581 aa15.18■□□□□ 0.02
TRAPPC11-210ENST00000513600 SLC24A1O60721 1099 aa15.15■□□□□ 0.02
TRAPPC11-210ENST00000513600 PTGER2P43116 358 aa15.13■□□□□ 0.01
TRAPPC11-210ENST00000513600 PPP4R3BQ5MIZ7 849 aa15.13■□□□□ 0.01
TRAPPC11-210ENST00000513600 ZNF687Q8N1G0 1237 aa15.13■□□□□ 0.01
TRAPPC11-210ENST00000513600 JPH4Q96JJ6 628 aa15.13■□□□□ 0.01
TRAPPC11-210ENST00000513600 PCDH10Q9P2E7 1040 aa15.13■□□□□ 0.01
TRAPPC11-210ENST00000513600 FOSBP53539 338 aa15.12■□□□□ 0.01
TRAPPC11-210ENST00000513600 ZNF454Q8N9F8 522 aa15.12■□□□□ 0.01
TRAPPC11-210ENST00000513600 CDAN1Q8IWY9 1227 aa15.11■□□□□ 0.01
TRAPPC11-210ENST00000513600 PHF14O94880 888 aa15.09■□□□□ 0.01
TRAPPC11-210ENST00000513600 DDX12PQ92771 950 aa15.05■□□□□ -0
TRAPPC11-210ENST00000513600 EPAS1Q99814 870 aa15.05■□□□□ -0
TRAPPC11-210ENST00000513600 PCDHGA10Q9Y5H3 936 aa15.05■□□□□ -0
TRAPPC11-210ENST00000513600 PBX2P40425 430 aa15.04■□□□□ -0
TRAPPC11-210ENST00000513600 TYW1BQ6NUM6 668 aa15.04■□□□□ -0
TRAPPC11-210ENST00000513600 FBXW7Q969H0 707 aa15.04■□□□□ -0
TRAPPC11-210ENST00000513600 ZDHHC16Q969W1 377 aa15.04■□□□□ -0
TRAPPC11-210ENST00000513600 GRXCR2A6NFK2 248 aa15□□□□□ -0.01
TRAPPC11-210ENST00000513600 BCL2L12Q9HB09 334 aa15□□□□□ -0.01
TRAPPC11-210ENST00000513600 ARHGAP33O14559 1287 aa14.98□□□□□ -0.01
TRAPPC11-210ENST00000513600 NBR1Q14596 966 aa14.98□□□□□ -0.01
TRAPPC11-210ENST00000513600 SEMA3EO15041 775 aa14.97□□□□□ -0.01
TRAPPC11-210ENST00000513600 KCNH8Q96L42 1107 aa14.97□□□□□ -0.01
TRAPPC11-210ENST00000513600 ADAM33Q9BZ11 813 aa14.97□□□□□ -0.01
TRAPPC11-210ENST00000513600 KRTAP3-3Q9BYR6 98 aa14.96□□□□□ -0.01
TRAPPC11-210ENST00000513600 KRTAP3-2Q9BYR7 98 aa14.96□□□□□ -0.01
TRAPPC11-210ENST00000513600 POTEEQ6S8J3 1075 aa14.95□□□□□ -0.02
TRAPPC11-210ENST00000513600 PTPREP23469 700 aa14.94□□□□□ -0.02
TRAPPC11-210ENST00000513600 MLLT3P42568 568 aaPredicted RBP14.94□□□□□ -0.02
TRAPPC11-210ENST00000513600 KCNK17Q96T54 332 aa14.93□□□□□ -0.02
TRAPPC11-210ENST00000513600 AXIN2Q9Y2T1 843 aa14.93□□□□□ -0.02
TRAPPC11-210ENST00000513600 OSBPP22059 807 aa14.92□□□□□ -0.02
TRAPPC11-210ENST00000513600 EN1Q05925 392 aaPredicted RBP14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms