RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, human

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VCAN-208	ENST00000512590	U2SURP	O15042	1029 aa	Known RBP	11.43	□□□□□ -0.58
VCAN-208	ENST00000512590	CCDC136	Q96JN2	1154 aa		11.43	□□□□□ -0.58
VCAN-208	ENST00000512590	HNRNPU	Q00839	825 aa	Known RBP eCLIP	11.41	□□□□□ -0.58
VCAN-208	ENST00000512590	ERICH6B	Q5W0A0	696 aa		11.41	□□□□□ -0.58
VCAN-208	ENST00000512590	KNSTRN	Q9Y448	316 aa		11.41	□□□□□ -0.58
VCAN-208	ENST00000512590	EID1	Q9Y6B2	187 aa		11.4	□□□□□ -0.58
VCAN-208	ENST00000512590	WWC2	Q6AWC2	1192 aa		11.4	□□□□□ -0.58
VCAN-208	ENST00000512590	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	11.4	□□□□□ -0.58
VCAN-208	ENST00000512590	TOMM22	Q9NS69	142 aa		11.4	□□□□□ -0.58
VCAN-208	ENST00000512590	AMOTL1	Q8IY63	956 aa		11.4	□□□□□ -0.59
VCAN-208	ENST00000512590	SAMD1	Q6SPF0	538 aa	Predicted RBP	11.39	□□□□□ -0.59
VCAN-208	ENST00000512590	ACIN1	Q9UKV3	1341 aa	Known RBP	11.39	□□□□□ -0.59
VCAN-208	ENST00000512590	R3HCC1	Q9Y3T6	440 aa	Known RBP	11.38	□□□□□ -0.59
VCAN-208	ENST00000512590	MCC	P23508	829 aa		11.37	□□□□□ -0.59
VCAN-208	ENST00000512590	DDRGK1	Q96HY6	314 aa		11.37	□□□□□ -0.59
VCAN-208	ENST00000512590	CCDC43	Q96MW1	224 aa	Known RBP	11.37	□□□□□ -0.59
VCAN-208	ENST00000512590	CCDC34	Q96HJ3	373 aa		11.37	□□□□□ -0.59
VCAN-208	ENST00000512590	DRC7	Q8IY82	874 aa		11.36	□□□□□ -0.59
VCAN-208	ENST00000512590	WASHC2A	Q641Q2	1341 aa		11.36	□□□□□ -0.59
VCAN-208	ENST00000512590	CREBRF	Q8IUR6	639 aa		11.36	□□□□□ -0.59
VCAN-208	ENST00000512590	KANK1	Q14678	1352 aa		11.35	□□□□□ -0.59
VCAN-208	ENST00000512590	SPDYE4	A6NLX3	237 aa		11.35	□□□□□ -0.59
VCAN-208	ENST00000512590	HSP90B1	P14625	803 aa	Known RBP	11.33	□□□□□ -0.6
VCAN-208	ENST00000512590	SAFB2	Q14151	953 aa	Known RBP eCLIP	11.33	□□□□□ -0.6
VCAN-208	ENST00000512590	KIAA1211	Q6ZU35	1233 aa		11.33	□□□□□ -0.6
VCAN-208	ENST00000512590	SYTL4	Q96C24	671 aa	Predicted RBP	11.32	□□□□□ -0.6
VCAN-208	ENST00000512590	MTUS2	Q5JR59	1369 aa		11.32	□□□□□ -0.6
VCAN-208	ENST00000512590	TMEM132A	Q24JP5	1023 aa		11.32	□□□□□ -0.6
VCAN-208	ENST00000512590	MRS2	Q9HD23	443 aa		11.31	□□□□□ -0.6
VCAN-208	ENST00000512590	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	11.31	□□□□□ -0.6
VCAN-208	ENST00000512590	HSP90AB1	P08238	724 aa	Known RBP	11.3	□□□□□ -0.6
VCAN-208	ENST00000512590	STK26	Q9P289	416 aa		11.3	□□□□□ -0.6
VCAN-208	ENST00000512590	WDHD1	O75717	1129 aa	Predicted RBP	11.3	□□□□□ -0.6
VCAN-208	ENST00000512590	TMEM87A	Q8NBN3	555 aa		11.3	□□□□□ -0.6
VCAN-208	ENST00000512590	CHMP4A	Q9BY43	222 aa		11.3	□□□□□ -0.6
VCAN-208	ENST00000512590	DHX16	O60231	1041 aa	Known RBP	11.3	□□□□□ -0.6
VCAN-208	ENST00000512590	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	11.29	□□□□□ -0.6
VCAN-208	ENST00000512590	RBM33	Q96EV2	1170 aa	Known RBP	11.29	□□□□□ -0.6
VCAN-208	ENST00000512590	MS4A1	P11836	297 aa		11.29	□□□□□ -0.6
VCAN-208	ENST00000512590	GGT6	Q6P531	493 aa		11.28	□□□□□ -0.6
VCAN-208	ENST00000512590	TPM4	P67936	248 aa		11.28	□□□□□ -0.6
VCAN-208	ENST00000512590	FRAT1	Q92837	279 aa	Predicted RBP	11.28	□□□□□ -0.6
VCAN-208	ENST00000512590	NGDN	Q8NEJ9	315 aa	Known RBP	11.28	□□□□□ -0.6
VCAN-208	ENST00000512590	GPATCH3	Q96I76	525 aa		11.27	□□□□□ -0.6
VCAN-208	ENST00000512590	CCDC97	Q96F63	343 aa	Predicted RBP	11.27	□□□□□ -0.61
VCAN-208	ENST00000512590	HTATSF1	O43719	755 aa	Known RBP	11.27	□□□□□ -0.61
VCAN-208	ENST00000512590	VPS37D	Q86XT2	251 aa		11.27	□□□□□ -0.61
VCAN-208	ENST00000512590	CSRNP3	Q8WYN3	585 aa		11.25	□□□□□ -0.61
VCAN-208	ENST00000512590	HDAC5	Q9UQL6	1122 aa		11.24	□□□□□ -0.61
VCAN-208	ENST00000512590	PES1	O00541	588 aa	Known RBP	11.24	□□□□□ -0.61
VCAN-208	ENST00000512590	AKAP17A	Q02040	695 aa	Known RBP	11.24	□□□□□ -0.61
VCAN-208	ENST00000512590	RRP7BP	Q9NSQ0	103 aa		11.24	□□□□□ -0.61
VCAN-208	ENST00000512590	CFDP1	Q9UEE9	299 aa	Predicted RBP	11.24	□□□□□ -0.61
VCAN-208	ENST00000512590	APBB1	O00213	710 aa		11.24	□□□□□ -0.61
VCAN-208	ENST00000512590	SPAG9	O60271	1321 aa	Known RBP	11.23	□□□□□ -0.61
VCAN-208	ENST00000512590	LTV1	Q96GA3	475 aa	Predicted RBP	11.23	□□□□□ -0.61
VCAN-208	ENST00000512590	TPM2	P07951	284 aa		11.22	□□□□□ -0.61
VCAN-208	ENST00000512590	AK7	Q96M32	723 aa		11.22	□□□□□ -0.61
VCAN-208	ENST00000512590	ODF2	Q5BJF6	829 aa		11.21	□□□□□ -0.61
VCAN-208	ENST00000512590	TPM3	P06753	285 aa		11.21	□□□□□ -0.62
VCAN-208	ENST00000512590	IBSP	P21815	317 aa	Predicted RBP	11.21	□□□□□ -0.62
VCAN-208	ENST00000512590	DDX10	Q13206	875 aa	Known RBP	11.2	□□□□□ -0.62
VCAN-208	ENST00000512590	STK31	Q9BXU1	1019 aa		11.2	□□□□□ -0.62
VCAN-208	ENST00000512590	TPD52L1	Q16890	204 aa	Predicted RBP	11.2	□□□□□ -0.62
VCAN-208	ENST00000512590	AMPH	P49418	695 aa		11.2	□□□□□ -0.62
VCAN-208	ENST00000512590	ZNF710	Q8N1W2	664 aa		11.19	□□□□□ -0.62
VCAN-208	ENST00000512590	GOLGA6L1	Q8N7Z2	621 aa		11.19	□□□□□ -0.62
VCAN-208	ENST00000512590	SLC4A3	P48751	1232 aa		11.19	□□□□□ -0.62
VCAN-208	ENST00000512590	USP35	Q9P2H5	1018 aa		11.19	□□□□□ -0.62
VCAN-208	ENST00000512590	IK	Q13123	557 aa	Predicted RBP	11.18	□□□□□ -0.62
VCAN-208	ENST00000512590	C16orf71	Q8IYS4	520 aa	Predicted RBP	11.18	□□□□□ -0.62
VCAN-208	ENST00000512590	PLCD3	Q8N3E9	789 aa		11.17	□□□□□ -0.62
VCAN-208	ENST00000512590	CT47A1	Q5JQC4	288 aa	Predicted RBP	11.17	□□□□□ -0.62
VCAN-208	ENST00000512590	C1orf141	Q5JVX7	400 aa		11.17	□□□□□ -0.62
VCAN-208	ENST00000512590	MORC1	Q86VD1	984 aa		11.17	□□□□□ -0.62
VCAN-208	ENST00000512590	CARD11	Q9BXL7	1154 aa		11.17	□□□□□ -0.62
VCAN-208	ENST00000512590	SYNE3	Q6ZMZ3	975 aa		11.16	□□□□□ -0.62
VCAN-208	ENST00000512590	TTC5	Q8N0Z6	440 aa		11.16	□□□□□ -0.62
VCAN-208	ENST00000512590	TSR1	Q2NL82	804 aa	Known RBP	11.16	□□□□□ -0.62
VCAN-208	ENST00000512590	MYCN	P04198	464 aa	Predicted RBP	11.15	□□□□□ -0.63
VCAN-208	ENST00000512590	CALD1	Q05682	793 aa	Known RBP	11.14	□□□□□ -0.63
VCAN-208	ENST00000512590	CCDC47	Q96A33	483 aa	Known RBP	11.14	□□□□□ -0.63
VCAN-208	ENST00000512590	PATL2	C9JE40	543 aa	Known RBP	11.13	□□□□□ -0.63
VCAN-208	ENST00000512590	PIP4K2B	P78356	416 aa		11.13	□□□□□ -0.63
VCAN-208	ENST00000512590	ZFYVE27	Q5T4F4	411 aa		11.13	□□□□□ -0.63
VCAN-208	ENST00000512590	SPRYD3	Q8NCJ5	442 aa		11.13	□□□□□ -0.63
VCAN-208	ENST00000512590	ATF3	P18847	181 aa		11.13	□□□□□ -0.63
VCAN-208	ENST00000512590	NUTM2B	A6NNL0	878 aa	Predicted RBP	11.13	□□□□□ -0.63
VCAN-208	ENST00000512590	NUTM2E	B1AL46	878 aa	Predicted RBP	11.13	□□□□□ -0.63
VCAN-208	ENST00000512590	NUTM2A	Q8IVF1	878 aa	Predicted RBP	11.13	□□□□□ -0.63
VCAN-208	ENST00000512590	SMC4	Q9NTJ3	1288 aa		11.13	□□□□□ -0.63
VCAN-208	ENST00000512590	NUTM2F	A1L443	756 aa		11.13	□□□□□ -0.63
VCAN-208	ENST00000512590	RFX1	P22670	979 aa		11.12	□□□□□ -0.63
VCAN-208	ENST00000512590	PCMTD1	Q96MG8	357 aa	Predicted RBP	11.12	□□□□□ -0.63
VCAN-208	ENST00000512590	CC2D1B	Q5T0F9	858 aa	Known RBP	11.12	□□□□□ -0.63
VCAN-208	ENST00000512590	RRP12	Q5JTH9	1297 aa	Known RBP	11.11	□□□□□ -0.63
VCAN-208	ENST00000512590	HSCB	Q8IWL3	235 aa		11.11	□□□□□ -0.63
VCAN-208	ENST00000512590	NGEF	Q8N5V2	710 aa		11.11	□□□□□ -0.63
VCAN-208	ENST00000512590	MPHOSPH10	O00566	681 aa	Known RBP	11.11	□□□□□ -0.63
VCAN-208	ENST00000512590	SENP3-EIF4A1	A0A087X0R7	540 aa		11.1	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms