RNA–Protein interactions for RNA: ENST00000512340.5

NR1I3-231, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 1 (best)

Gene NR1I3, Length 891 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-231	ENST00000512340	ARHGAP5	Q13017	1502 aa		11.61	□□□□□ -0.55
NR1I3-231	ENST00000512340	CFDP1	Q9UEE9	299 aa	Predicted RBP	11.61	□□□□□ -0.55
NR1I3-231	ENST00000512340	LRRIQ1	Q96JM4	1722 aa		11.6	□□□□□ -0.55
NR1I3-231	ENST00000512340	TIAM1	Q13009	1591 aa		11.6	□□□□□ -0.55
NR1I3-231	ENST00000512340	TTC37	Q6PGP7	1564 aa		11.6	□□□□□ -0.55
NR1I3-231	ENST00000512340	FBXO41	Q8TF61	875 aa		11.6	□□□□□ -0.55
NR1I3-231	ENST00000512340	DENND4B	O75064	1496 aa	Predicted RBP	11.59	□□□□□ -0.55
NR1I3-231	ENST00000512340	MYT1L	Q9UL68	1186 aa		11.59	□□□□□ -0.55
NR1I3-231	ENST00000512340	ZNF777	Q9ULD5	760 aa	Predicted RBP	11.58	□□□□□ -0.56
NR1I3-231	ENST00000512340	SUPT6H	Q7KZ85	1726 aa	Known RBP	11.57	□□□□□ -0.56
NR1I3-231	ENST00000512340	PLEKHH2	Q8IVE3	1493 aa		11.57	□□□□□ -0.56
NR1I3-231	ENST00000512340	SCAPER	Q9BY12	1400 aa		11.57	□□□□□ -0.56
NR1I3-231	ENST00000512340	LRRC9	Q6ZRR7	1453 aa		11.57	□□□□□ -0.56
NR1I3-231	ENST00000512340	RAPGEF3	O95398	923 aa		11.55	□□□□□ -0.56
NR1I3-231	ENST00000512340	RSPH4A	Q5TD94	716 aa		11.55	□□□□□ -0.56
NR1I3-231	ENST00000512340	PREX2	Q70Z35	1606 aa		11.55	□□□□□ -0.56
NR1I3-231	ENST00000512340	ITSN2	Q9NZM3	1697 aa		11.55	□□□□□ -0.56
NR1I3-231	ENST00000512340	NCOA2	Q15596	1464 aa		11.53	□□□□□ -0.56
NR1I3-231	ENST00000512340	ZNF518A	Q6AHZ1	1483 aa		11.53	□□□□□ -0.56
NR1I3-231	ENST00000512340	MAGI2	Q86UL8	1455 aa		11.53	□□□□□ -0.56
NR1I3-231	ENST00000512340	GPATCH8	Q9UKJ3	1502 aa	Known RBP	11.53	□□□□□ -0.56
NR1I3-231	ENST00000512340	POGZ	Q7Z3K3	1410 aa		11.52	□□□□□ -0.57
NR1I3-231	ENST00000512340	CDC42BPA	Q5VT25	1732 aa		11.51	□□□□□ -0.57
NR1I3-231	ENST00000512340	KIAA1107	Q9UPP5	1409 aa		11.51	□□□□□ -0.57
NR1I3-231	ENST00000512340	CDC42BPB	Q9Y5S2	1711 aa		11.5	□□□□□ -0.57
NR1I3-231	ENST00000512340	KANK4	Q5T7N3	995 aa	Predicted RBP	11.5	□□□□□ -0.57
NR1I3-231	ENST00000512340	ARID4B	Q4LE39	1312 aa	Predicted RBP	11.5	□□□□□ -0.57
NR1I3-231	ENST00000512340	TSPY4	P0CV99	314 aa		11.49	□□□□□ -0.57
NR1I3-231	ENST00000512340	TSPY10	P0CW01	314 aa		11.49	□□□□□ -0.57
NR1I3-231	ENST00000512340	MIA2	Q96PC5	1412 aa		11.49	□□□□□ -0.57
NR1I3-231	ENST00000512340	PTPRM	P28827	1452 aa		11.49	□□□□□ -0.57
NR1I3-231	ENST00000512340	AFAP1	Q8N556	730 aa		11.48	□□□□□ -0.57
NR1I3-231	ENST00000512340	SPAG9	O60271	1321 aa	Known RBP	11.48	□□□□□ -0.57
NR1I3-231	ENST00000512340	MYOM3	Q5VTT5	1437 aa		11.48	□□□□□ -0.57
NR1I3-231	ENST00000512340	ADAMTSL3	P82987	1691 aa		11.48	□□□□□ -0.57
NR1I3-231	ENST00000512340	ABCC1	P33527	1531 aa		11.47	□□□□□ -0.57
NR1I3-231	ENST00000512340	ZMYM4	Q5VZL5	1548 aa		11.47	□□□□□ -0.57
NR1I3-231	ENST00000512340	ZFYVE16	Q7Z3T8	1539 aa		11.47	□□□□□ -0.57
NR1I3-231	ENST00000512340	HNRNPM	P52272	730 aa	Known RBP eCLIP	11.47	□□□□□ -0.57
NR1I3-231	ENST00000512340	RICTOR	Q6R327	1708 aa		11.46	□□□□□ -0.57
NR1I3-231	ENST00000512340	SYCP2	Q9BX26	1530 aa		11.45	□□□□□ -0.58
NR1I3-231	ENST00000512340	MLH3	Q9UHC1	1453 aa		11.44	□□□□□ -0.58
NR1I3-231	ENST00000512340	SAMD9L	Q8IVG5	1584 aa		11.44	□□□□□ -0.58
NR1I3-231	ENST00000512340	ARHGEF40	Q8TER5	1519 aa		11.44	□□□□□ -0.58
NR1I3-231	ENST00000512340	ATP10A	O60312	1499 aa		11.44	□□□□□ -0.58
NR1I3-231	ENST00000512340	CAMSAP2	Q08AD1	1489 aa		11.44	□□□□□ -0.58
NR1I3-231	ENST00000512340	KDM5C	P41229	1560 aa		11.43	□□□□□ -0.58
NR1I3-231	ENST00000512340	FRMPD1	Q5SYB0	1578 aa		11.43	□□□□□ -0.58
NR1I3-231	ENST00000512340	ESF1	Q9H501	851 aa	Known RBP	11.43	□□□□□ -0.58
NR1I3-231	ENST00000512340	BCORL1	Q5H9F3	1711 aa		11.43	□□□□□ -0.58
NR1I3-231	ENST00000512340	TRAPPC8	Q9Y2L5	1435 aa		11.43	□□□□□ -0.58
NR1I3-231	ENST00000512340	ZNF644	Q9H582	1327 aa	Predicted RBP	11.42	□□□□□ -0.58
NR1I3-231	ENST00000512340	CCDC141	Q6ZP82	1450 aa		11.42	□□□□□ -0.58
NR1I3-231	ENST00000512340	C9orf84	Q5VXU9	1444 aa		11.42	□□□□□ -0.58
NR1I3-231	ENST00000512340	RTEL1-TNFRSF6B	F6WH68	1400 aa		11.41	□□□□□ -0.58
NR1I3-231	ENST00000512340	LMTK3	Q96Q04	1460 aa		11.4	□□□□□ -0.58
NR1I3-231	ENST00000512340	FAM50A	Q14320	339 aa	Known RBP	11.4	□□□□□ -0.58
NR1I3-231	ENST00000512340	FGD6	Q6ZV73	1430 aa		11.4	□□□□□ -0.58
NR1I3-231	ENST00000512340	ARHGEF12	Q9NZN5	1544 aa		11.4	□□□□□ -0.59
NR1I3-231	ENST00000512340	ARHGEF5	Q12774	1597 aa		11.38	□□□□□ -0.59
NR1I3-231	ENST00000512340	YEATS2	Q9ULM3	1422 aa		11.38	□□□□□ -0.59
NR1I3-231	ENST00000512340	ATP7A	Q04656	1500 aa		11.38	□□□□□ -0.59
NR1I3-231	ENST00000512340	MADD	Q8WXG6	1647 aa		11.38	□□□□□ -0.59
NR1I3-231	ENST00000512340	MBD5	Q9P267	1494 aa		11.38	□□□□□ -0.59
NR1I3-231	ENST00000512340	PTPN23	Q9H3S7	1636 aa		11.37	□□□□□ -0.59
NR1I3-231	ENST00000512340	MLEC	Q14165	292 aa		11.35	□□□□□ -0.59
NR1I3-231	ENST00000512340	PPARGC1B	Q86YN6	1023 aa	Known RBP	11.35	□□□□□ -0.59
NR1I3-231	ENST00000512340	PPP6R1	Q9UPN7	881 aa		11.35	□□□□□ -0.59
NR1I3-231	ENST00000512340	A2M	P01023	1474 aa		11.35	□□□□□ -0.59
NR1I3-231	ENST00000512340	TCOF1	Q13428	1488 aa	Known RBP	11.35	□□□□□ -0.59
NR1I3-231	ENST00000512340	RERE	Q9P2R6	1566 aa		11.35	□□□□□ -0.59
NR1I3-231	ENST00000512340	DIP2C	Q9Y2E4	1556 aa		11.34	□□□□□ -0.59
NR1I3-231	ENST00000512340	ANKRD30A	Q9BXX3	1397 aa		11.34	□□□□□ -0.59
NR1I3-231	ENST00000512340	AGL	P35573	1532 aa		11.34	□□□□□ -0.59
NR1I3-231	ENST00000512340	KIDINS220	Q9ULH0	1771 aa		11.33	□□□□□ -0.59
NR1I3-231	ENST00000512340	ADGB	Q8N7X0	1667 aa		11.33	□□□□□ -0.6
NR1I3-231	ENST00000512340	INO80	Q9ULG1	1556 aa	Predicted RBP	11.33	□□□□□ -0.6
NR1I3-231	ENST00000512340	DHX29	Q7Z478	1369 aa	Known RBP	11.33	□□□□□ -0.6
NR1I3-231	ENST00000512340	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	11.33	□□□□□ -0.6
NR1I3-231	ENST00000512340	RIMS1	Q86UR5	1692 aa	Known RBP	11.33	□□□□□ -0.6
NR1I3-231	ENST00000512340	SHANK2	Q9UPX8	1470 aa		11.32	□□□□□ -0.6
NR1I3-231	ENST00000512340	DAPK1	P53355	1430 aa		11.32	□□□□□ -0.6
NR1I3-231	ENST00000512340	ABCA6	Q8N139	1617 aa		11.31	□□□□□ -0.6
NR1I3-231	ENST00000512340	CERK	Q8TCT0	537 aa		11.31	□□□□□ -0.6
NR1I3-231	ENST00000512340	DMRT2	Q9Y5R5	561 aa		11.31	□□□□□ -0.6
NR1I3-231	ENST00000512340	CNTLN	Q9NXG0	1405 aa		11.31	□□□□□ -0.6
NR1I3-231	ENST00000512340	MAST1	Q9Y2H9	1570 aa		11.31	□□□□□ -0.6
NR1I3-231	ENST00000512340	ABCC5	O15440	1437 aa		11.3	□□□□□ -0.6
NR1I3-231	ENST00000512340	KIF3B	O15066	747 aa		11.3	□□□□□ -0.6
NR1I3-231	ENST00000512340	GGT6	Q6P531	493 aa		11.3	□□□□□ -0.6
NR1I3-231	ENST00000512340	DNMT1	P26358	1616 aa	Known RBP	11.29	□□□□□ -0.6
NR1I3-231	ENST00000512340	CHIC2	Q9UKJ5	165 aa		11.29	□□□□□ -0.6
NR1I3-231	ENST00000512340	KIF15	Q9NS87	1388 aa		11.28	□□□□□ -0.6
NR1I3-231	ENST00000512340	RRP7BP	Q9NSQ0	103 aa		11.28	□□□□□ -0.6
NR1I3-231	ENST00000512340	DUOX2	Q9NRD8	1548 aa		11.28	□□□□□ -0.6
NR1I3-231	ENST00000512340	PLXNC1	O60486	1568 aa		11.28	□□□□□ -0.6
NR1I3-231	ENST00000512340	ITGAE	P38570	1179 aa		11.27	□□□□□ -0.61
NR1I3-231	ENST00000512340	KANK1	Q14678	1352 aa		11.27	□□□□□ -0.61
NR1I3-231	ENST00000512340	WASHC2C	Q9Y4E1	1318 aa		11.26	□□□□□ -0.61
NR1I3-231	ENST00000512340	FER1L4	A9Z1Z3	1794 aa		11.26	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 93 ms