RNA–Protein interactions for RNA: ENST00000511732.1

COL1A1-213, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 789 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-213ENST00000511732 CCDC18Q5T9S5 1454 aa24.92■■□□□ 1.58
COL1A1-213ENST00000511732 POGZQ7Z3K3 1410 aa24.92■■□□□ 1.58
COL1A1-213ENST00000511732 SIGLEC1Q9BZZ2 1709 aa24.92■■□□□ 1.58
COL1A1-213ENST00000511732 EFCAB2Q5VUJ9 269 aa24.91■■□□□ 1.58
COL1A1-213ENST00000511732 ARID4BQ4LE39 1312 aaPredicted RBP24.9■■□□□ 1.58
COL1A1-213ENST00000511732 ZFYVE16Q7Z3T8 1539 aa24.9■■□□□ 1.58
COL1A1-213ENST00000511732 FYCO1Q9BQS8 1478 aa24.89■■□□□ 1.58
COL1A1-213ENST00000511732 MADDQ8WXG6 1647 aa24.89■■□□□ 1.57
COL1A1-213ENST00000511732 CDC42BPBQ9Y5S2 1711 aa24.89■■□□□ 1.57
COL1A1-213ENST00000511732 PTPRMP28827 1452 aa24.89■■□□□ 1.57
COL1A1-213ENST00000511732 MAGI2Q86UL8 1455 aa24.88■■□□□ 1.57
COL1A1-213ENST00000511732 ARHGAP5Q13017 1502 aa24.87■■□□□ 1.57
COL1A1-213ENST00000511732 PREX2Q70Z35 1606 aa24.83■■□□□ 1.56
COL1A1-213ENST00000511732 RIMS1Q86UR5 1692 aaKnown RBP24.8■■□□□ 1.56
COL1A1-213ENST00000511732 CDC42BPAQ5VT25 1732 aa24.8■■□□□ 1.56
COL1A1-213ENST00000511732 AFAP1Q8N556 730 aa24.79■■□□□ 1.56
COL1A1-213ENST00000511732 ZNF518AQ6AHZ1 1483 aa24.78■■□□□ 1.56
COL1A1-213ENST00000511732 KDM5CP41229 1560 aa24.78■■□□□ 1.56
COL1A1-213ENST00000511732 ATP10AO60312 1499 aa24.77■■□□□ 1.56
COL1A1-213ENST00000511732 ARHGEF12Q9NZN5 1544 aa24.76■■□□□ 1.55
COL1A1-213ENST00000511732 ABCC1P33527 1531 aa24.75■■□□□ 1.55
COL1A1-213ENST00000511732 C9orf84Q5VXU9 1444 aa24.73■■□□□ 1.55
COL1A1-213ENST00000511732 MLECQ14165 292 aa24.73■■□□□ 1.55
COL1A1-213ENST00000511732 ITSN2Q9NZM3 1697 aa24.72■■□□□ 1.55
COL1A1-213ENST00000511732 TRAPPC8Q9Y2L5 1435 aa24.72■■□□□ 1.55
COL1A1-213ENST00000511732 CEP162Q5TB80 1403 aa24.71■■□□□ 1.55
COL1A1-213ENST00000511732 GPATCH8Q9UKJ3 1502 aaKnown RBP24.7■■□□□ 1.54
COL1A1-213ENST00000511732 DIP2CQ9Y2E4 1556 aa24.69■■□□□ 1.54
COL1A1-213ENST00000511732 FER1L4A9Z1Z3 1794 aa24.69■■□□□ 1.54
COL1A1-213ENST00000511732 MLH3Q9UHC1 1453 aa24.67■■□□□ 1.54
COL1A1-213ENST00000511732 ABCA6Q8N139 1617 aa24.67■■□□□ 1.54
COL1A1-213ENST00000511732 SAMD9LQ8IVG5 1584 aa24.67■■□□□ 1.54
COL1A1-213ENST00000511732 LMTK3Q96Q04 1460 aa24.64■■□□□ 1.54
COL1A1-213ENST00000511732 PLPPR3Q6T4P5 718 aa24.64■■□□□ 1.54
COL1A1-213ENST00000511732 MYT1LQ9UL68 1186 aa24.64■■□□□ 1.54
COL1A1-213ENST00000511732 ZNF777Q9ULD5 760 aaPredicted RBP24.63■■□□□ 1.53
COL1A1-213ENST00000511732 REREQ9P2R6 1566 aa24.63■■□□□ 1.53
COL1A1-213ENST00000511732 KIDINS220Q9ULH0 1771 aa24.62■■□□□ 1.53
COL1A1-213ENST00000511732 MTUS2Q5JR59 1369 aa24.62■■□□□ 1.53
COL1A1-213ENST00000511732 LOC105371045A0A1W2PR82 267 aa24.61■■□□□ 1.53
COL1A1-213ENST00000511732 SYCP2Q9BX26 1530 aa24.6■■□□□ 1.53
COL1A1-213ENST00000511732 CCNB3Q8WWL7 1395 aa24.57■■□□□ 1.52
COL1A1-213ENST00000511732 EHBP1L1Q8N3D4 1523 aa24.57■■□□□ 1.52
COL1A1-213ENST00000511732 HNRNPMP52272 730 aaKnown RBP eCLIP24.57■■□□□ 1.52
COL1A1-213ENST00000511732 CFDP1Q9UEE9 299 aaPredicted RBP24.56■■□□□ 1.52
COL1A1-213ENST00000511732 TIAM1Q13009 1591 aa24.55■■□□□ 1.52
COL1A1-213ENST00000511732 AGLP35573 1532 aa24.54■■□□□ 1.52
COL1A1-213ENST00000511732 ILDR1Q86SU0 546 aaPredicted RBP24.53■■□□□ 1.52
COL1A1-213ENST00000511732 KIAA1107Q9UPP5 1409 aa24.52■■□□□ 1.52
COL1A1-213ENST00000511732 CEBPAP49715 358 aaPredicted RBP24.52■■□□□ 1.52
COL1A1-213ENST00000511732 HSPA2P54652 639 aa24.5■■□□□ 1.51
COL1A1-213ENST00000511732 PLEKHH2Q8IVE3 1493 aa24.5■■□□□ 1.51
COL1A1-213ENST00000511732 ZNF644Q9H582 1327 aaPredicted RBP24.49■■□□□ 1.51
COL1A1-213ENST00000511732 SPAG9O60271 1321 aaKnown RBP24.48■■□□□ 1.51
COL1A1-213ENST00000511732 INO80Q9ULG1 1556 aaPredicted RBP24.47■■□□□ 1.51
COL1A1-213ENST00000511732 ATP7AQ04656 1500 aa24.46■■□□□ 1.51
COL1A1-213ENST00000511732 VPS8Q8N3P4 1428 aa24.45■■□□□ 1.51
COL1A1-213ENST00000511732 C3P01024 1663 aa24.44■■□□□ 1.5
COL1A1-213ENST00000511732 PREX1Q8TCU6 1659 aa24.44■■□□□ 1.5
COL1A1-213ENST00000511732 NCOA2Q15596 1464 aa24.44■■□□□ 1.5
COL1A1-213ENST00000511732 MBD5Q9P267 1494 aa24.44■■□□□ 1.5
COL1A1-213ENST00000511732 SUPT6HQ7KZ85 1726 aaKnown RBP24.44■■□□□ 1.5
COL1A1-213ENST00000511732 PLXNC1O60486 1568 aa24.4■■□□□ 1.5
COL1A1-213ENST00000511732 A2MP01023 1474 aa24.38■■□□□ 1.49
COL1A1-213ENST00000511732 LRRC9Q6ZRR7 1453 aa24.37■■□□□ 1.49
COL1A1-213ENST00000511732 SETD1BQ9UPS6 1966 aaKnown RBP24.35■■□□□ 1.49
COL1A1-213ENST00000511732 ESF1Q9H501 851 aaKnown RBP24.35■■□□□ 1.49
COL1A1-213ENST00000511732 ADGBQ8N7X0 1667 aa24.34■■□□□ 1.49
COL1A1-213ENST00000511732 CAMSAP2Q08AD1 1489 aa24.34■■□□□ 1.49
COL1A1-213ENST00000511732 CNTLNQ9NXG0 1405 aa24.33■■□□□ 1.49
COL1A1-213ENST00000511732 KANK4Q5T7N3 995 aaPredicted RBP24.32■■□□□ 1.48
COL1A1-213ENST00000511732 UHRF1BP1Q6BDS2 1440 aa24.32■■□□□ 1.48
COL1A1-213ENST00000511732 MROH2AA6NES4 1674 aa24.31■■□□□ 1.48
COL1A1-213ENST00000511732 RTEL1-TNFRSF6BF6WH68 1400 aa24.31■■□□□ 1.48
COL1A1-213ENST00000511732 MAP3K1Q13233 1512 aa24.3■■□□□ 1.48
COL1A1-213ENST00000511732 CCDC141Q6ZP82 1450 aa24.29■■□□□ 1.48
COL1A1-213ENST00000511732 CLTCQ00610 1675 aaKnown RBP24.29■■□□□ 1.48
COL1A1-213ENST00000511732 STRCQ7RTU9 1775 aa24.29■■□□□ 1.48
COL1A1-213ENST00000511732 ZMYM3Q14202 1370 aa24.28■■□□□ 1.48
COL1A1-213ENST00000511732 GGT6Q6P531 493 aa24.26■■□□□ 1.47
COL1A1-213ENST00000511732 ARHGEF5Q12774 1597 aa24.25■■□□□ 1.47
COL1A1-213ENST00000511732 DHX29Q7Z478 1369 aaKnown RBP24.24■■□□□ 1.47
COL1A1-213ENST00000511732 RSPH4AQ5TD94 716 aa24.23■■□□□ 1.47
COL1A1-213ENST00000511732 FBXO41Q8TF61 875 aa24.22■■□□□ 1.47
COL1A1-213ENST00000511732 NPATQ14207 1427 aa24.21■■□□□ 1.47
COL1A1-213ENST00000511732 PPP6R1Q9UPN7 881 aa24.17■■□□□ 1.46
COL1A1-213ENST00000511732 PTPRKQ15262 1439 aa24.17■■□□□ 1.46
COL1A1-213ENST00000511732 MYOM3Q5VTT5 1437 aa24.17■■□□□ 1.46
COL1A1-213ENST00000511732 KIF3BO15066 747 aa24.15■■□□□ 1.46
COL1A1-213ENST00000511732 MIA2Q96PC5 1412 aa24.15■■□□□ 1.46
COL1A1-213ENST00000511732 TSPY4P0CV99 314 aa24.14■■□□□ 1.45
COL1A1-213ENST00000511732 TSPY10P0CW01 314 aa24.14■■□□□ 1.45
COL1A1-213ENST00000511732 MAST1Q9Y2H9 1570 aa24.13■■□□□ 1.45
COL1A1-213ENST00000511732 MYO3AQ8NEV4 1616 aa24.13■■□□□ 1.45
COL1A1-213ENST00000511732 DMRT2Q9Y5R5 561 aa24.12■■□□□ 1.45
COL1A1-213ENST00000511732 NCOA1Q15788 1441 aa24.1■■□□□ 1.45
COL1A1-213ENST00000511732 CAMSAP1Q5T5Y3 1602 aa24.1■■□□□ 1.45
COL1A1-213ENST00000511732 CERKQ8TCT0 537 aa24.1■■□□□ 1.45
COL1A1-213ENST00000511732 ZNF142P52746 1687 aaPredicted RBP24.09■■□□□ 1.45
COL1A1-213ENST00000511732 PTPRTO14522 1441 aa24.09■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms