RNA–Protein interactions for RNA: ENST00000511263.1

HMGB3P13-201, Transcript of high mobility group box 3 pseudogene 13, humanhuman

BASIC

Gene HMGB3P13, Length 607 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P13-201ENST00000511263 RTN4Q9NQC3 1192 aaKnown RBP11.15□□□□□ -0.62
HMGB3P13-201ENST00000511263 ERBB3P21860 1342 aa11.12□□□□□ -0.63
HMGB3P13-201ENST00000511263 PKD2Q13563 968 aa11.12□□□□□ -0.63
HMGB3P13-201ENST00000511263 BCL11BQ9C0K0 894 aaPredicted RBP11.11□□□□□ -0.63
HMGB3P13-201ENST00000511263 FBXO22Q8NEZ5 403 aa11.09□□□□□ -0.63
HMGB3P13-201ENST00000511263 VARS2Q5ST30 1063 aaKnown RBP11.08□□□□□ -0.64
HMGB3P13-201ENST00000511263 RIMBP2O15034 1052 aa11.07□□□□□ -0.64
HMGB3P13-201ENST00000511263 GPR153Q6NV75 609 aa11.06□□□□□ -0.64
HMGB3P13-201ENST00000511263 STK24Q9Y6E0 443 aa11.06□□□□□ -0.64
HMGB3P13-201ENST00000511263 NLRP6P59044 892 aa11.05□□□□□ -0.64
HMGB3P13-201ENST00000511263 MFRPQ9BY79 579 aa11.05□□□□□ -0.64
HMGB3P13-201ENST00000511263 ZSWIM6Q9HCJ5 1215 aa11.03□□□□□ -0.64
HMGB3P13-201ENST00000511263 DCAF8L2P0C7V8 631 aa11.02□□□□□ -0.65
HMGB3P13-201ENST00000511263 STK25O00506 426 aa11.01□□□□□ -0.65
HMGB3P13-201ENST00000511263 ARSIQ5FYB1 569 aa11.01□□□□□ -0.65
HMGB3P13-201ENST00000511263 KHSRPQ92945 711 aaKnown RBP eCLIP11.01□□□□□ -0.65
HMGB3P13-201ENST00000511263 RGL2O15211 777 aa10.97□□□□□ -0.65
HMGB3P13-201ENST00000511263 ZNF687Q8N1G0 1237 aa10.97□□□□□ -0.65
HMGB3P13-201ENST00000511263 C2orf72A6NCS6 295 aa10.94□□□□□ -0.66
HMGB3P13-201ENST00000511263 KIF3CO14782 793 aa10.94□□□□□ -0.66
HMGB3P13-201ENST00000511263 RNF166Q96A37 237 aaPredicted RBP10.91□□□□□ -0.66
HMGB3P13-201ENST00000511263 ZNF316A6NFI3 1004 aaPredicted RBP10.9□□□□□ -0.66
HMGB3P13-201ENST00000511263 MYT1LQ9UL68 1186 aa10.88□□□□□ -0.67
HMGB3P13-201ENST00000511263 PPP1R37O75864 691 aa10.87□□□□□ -0.67
HMGB3P13-201ENST00000511263 NUDT7P0C024 238 aa10.86□□□□□ -0.67
HMGB3P13-201ENST00000511263 ANKRD13DQ6ZTN6 518 aa10.85□□□□□ -0.67
HMGB3P13-201ENST00000511263 CHGAP10645 457 aaKnown RBP10.84□□□□□ -0.67
HMGB3P13-201ENST00000511263 HS6ST3Q8IZP7 471 aa10.82□□□□□ -0.68
HMGB3P13-201ENST00000511263 POTEEQ6S8J3 1075 aa10.81□□□□□ -0.68
HMGB3P13-201ENST00000511263 PCDHGA4Q9Y5G9 962 aa10.81□□□□□ -0.68
HMGB3P13-201ENST00000511263 LSM11P83369 360 aaKnown RBP eCLIP10.8□□□□□ -0.68
HMGB3P13-201ENST00000511263 TMC2Q8TDI7 906 aa10.8□□□□□ -0.68
HMGB3P13-201ENST00000511263 RYDENQ9NUL5 291 aaKnown RBP10.8□□□□□ -0.68
HMGB3P13-201ENST00000511263 LHX6Q9UPM6 363 aa10.8□□□□□ -0.68
HMGB3P13-201ENST00000511263 SLC34A2O95436 690 aa10.79□□□□□ -0.68
HMGB3P13-201ENST00000511263 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.79□□□□□ -0.68
HMGB3P13-201ENST00000511263 AXIN2Q9Y2T1 843 aa10.78□□□□□ -0.68
HMGB3P13-201ENST00000511263 BBXQ8WY36 941 aaPredicted RBP10.75□□□□□ -0.69
HMGB3P13-201ENST00000511263 PTGER2P43116 358 aa10.74□□□□□ -0.69
HMGB3P13-201ENST00000511263 DNAJC5Q9H3Z4 198 aa10.73□□□□□ -0.69
HMGB3P13-201ENST00000511263 KDM4FA0A1W2PPD8 638 aa10.7□□□□□ -0.7
HMGB3P13-201ENST00000511263 PBX2P40425 430 aa10.7□□□□□ -0.7
HMGB3P13-201ENST00000511263 PLPP6Q8IY26 295 aa10.67□□□□□ -0.7
HMGB3P13-201ENST00000511263 PTCD2Q8WV60 388 aaKnown RBP10.66□□□□□ -0.7
HMGB3P13-201ENST00000511263 FOXK1P85037 733 aa10.65□□□□□ -0.7
HMGB3P13-201ENST00000511263 DSG2Q14126 1118 aa10.65□□□□□ -0.7
HMGB3P13-201ENST00000511263 GPHNQ9NQX3 736 aaPredicted RBP10.65□□□□□ -0.7
HMGB3P13-201ENST00000511263 NKX1-1Q15270 411 aaPredicted RBP10.63□□□□□ -0.71
HMGB3P13-201ENST00000511263 ARHGAP33O14559 1287 aa10.62□□□□□ -0.71
HMGB3P13-201ENST00000511263 DMRTA1Q5VZB9 504 aa10.62□□□□□ -0.71
HMGB3P13-201ENST00000511263 ADGRD1Q6QNK2 874 aa10.62□□□□□ -0.71
HMGB3P13-201ENST00000511263 SPRYD3Q8NCJ5 442 aa10.62□□□□□ -0.71
HMGB3P13-201ENST00000511263 PSEN2P49810 448 aa10.61□□□□□ -0.71
HMGB3P13-201ENST00000511263 PSDA5PKW4 1024 aaPredicted RBP10.58□□□□□ -0.72
HMGB3P13-201ENST00000511263 HRO43593 1189 aa10.54□□□□□ -0.72
HMGB3P13-201ENST00000511263 PAXIP1Q6ZW49 1069 aaPredicted RBP10.54□□□□□ -0.72
HMGB3P13-201ENST00000511263 CFAP44Q96MT7 982 aa10.54□□□□□ -0.72
HMGB3P13-201ENST00000511263 PPP4R3BQ5MIZ7 849 aa10.53□□□□□ -0.72
HMGB3P13-201ENST00000511263 UPF1Q92900 1129 aaKnown RBP eCLIP10.53□□□□□ -0.72
HMGB3P13-201ENST00000511263 TK2O00142 265 aa10.52□□□□□ -0.73
HMGB3P13-201ENST00000511263 OXER1Q8TDS5 423 aa10.52□□□□□ -0.73
HMGB3P13-201ENST00000511263 TBC1D12O60347 775 aa10.51□□□□□ -0.73
HMGB3P13-201ENST00000511263 KCNK17Q96T54 332 aa10.51□□□□□ -0.73
HMGB3P13-201ENST00000511263 CRISPLD2Q9H0B8 497 aa10.51□□□□□ -0.73
HMGB3P13-201ENST00000511263 HCSTQ9UBK5 93 aa10.51□□□□□ -0.73
HMGB3P13-201ENST00000511263 PLCB2Q00722 1185 aa10.5□□□□□ -0.73
HMGB3P13-201ENST00000511263 PLA2G2EQ9NZK7 142 aa10.5□□□□□ -0.73
HMGB3P13-201ENST00000511263 GTPBP6O43824 516 aaPredicted RBP10.49□□□□□ -0.73
HMGB3P13-201ENST00000511263 NCKAP5LQ9HCH0 1330 aa10.48□□□□□ -0.73
HMGB3P13-201ENST00000511263 KCTD12Q96CX2 325 aaKnown RBP10.47□□□□□ -0.73
HMGB3P13-201ENST00000511263 PPP1R15BQ5SWA1 713 aa10.46□□□□□ -0.73
HMGB3P13-201ENST00000511263 ZNF454Q8N9F8 522 aa10.45□□□□□ -0.74
HMGB3P13-201ENST00000511263 VPS9D1Q9Y2B5 631 aa10.44□□□□□ -0.74
HMGB3P13-201ENST00000511263 BCL2L12Q9HB09 334 aa10.41□□□□□ -0.74
HMGB3P13-201ENST00000511263 FOSBP53539 338 aa10.4□□□□□ -0.74
HMGB3P13-201ENST00000511263 KCNH8Q96L42 1107 aa10.39□□□□□ -0.75
HMGB3P13-201ENST00000511263 STAC3Q96MF2 364 aa10.38□□□□□ -0.75
HMGB3P13-201ENST00000511263 PDE4AP27815 886 aa10.37□□□□□ -0.75
HMGB3P13-201ENST00000511263 LARP6Q9BRS8 491 aaKnown RBP10.37□□□□□ -0.75
HMGB3P13-201ENST00000511263 EVI5O60447 810 aa10.36□□□□□ -0.75
HMGB3P13-201ENST00000511263 HAP1P54257 671 aaPredicted RBP10.36□□□□□ -0.75
HMGB3P13-201ENST00000511263 ANO8Q9HCE9 1232 aaPredicted RBP10.36□□□□□ -0.75
HMGB3P13-201ENST00000511263 PTPN5P54829 565 aa10.35□□□□□ -0.75
HMGB3P13-201ENST00000511263 ADAM33Q9BZ11 813 aa10.35□□□□□ -0.75
HMGB3P13-201ENST00000511263 BHMG1C9JSJ3 638 aaPredicted RBP10.34□□□□□ -0.75
HMGB3P13-201ENST00000511263 PTPREP23469 700 aa10.34□□□□□ -0.75
HMGB3P13-201ENST00000511263 ZBED2Q9BTP6 218 aa10.34□□□□□ -0.75
HMGB3P13-201ENST00000511263 SLC4A5Q9BY07 1137 aa10.34□□□□□ -0.75
HMGB3P13-201ENST00000511263 DDX27Q96GQ7 796 aaKnown RBP10.33□□□□□ -0.76
HMGB3P13-201ENST00000511263 JPH4Q96JJ6 628 aa10.33□□□□□ -0.76
HMGB3P13-201ENST00000511263 EMILIN3Q9NT22 766 aa10.32□□□□□ -0.76
HMGB3P13-201ENST00000511263 MFSD10Q14728 455 aa10.31□□□□□ -0.76
HMGB3P13-201ENST00000511263 ZDHHC16Q969W1 377 aa10.31□□□□□ -0.76
HMGB3P13-201ENST00000511263 CADPS2Q86UW7 1296 aa10.3□□□□□ -0.76
HMGB3P13-201ENST00000511263 THSD4Q6ZMP0 1018 aa10.29□□□□□ -0.76
HMGB3P13-201ENST00000511263 WDR70Q9NW82 654 aa10.29□□□□□ -0.76
HMGB3P13-201ENST00000511263 MAP3K9P80192 1104 aa10.28□□□□□ -0.76
HMGB3P13-201ENST00000511263 WNT2BQ93097 391 aa10.26□□□□□ -0.77
HMGB3P13-201ENST00000511263 PCDHGA10Q9Y5H3 936 aa10.26□□□□□ -0.77
HMGB3P13-201ENST00000511263 VSIG10Q8N0Z9 540 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms