RNA–Protein interactions for RNA: ENST00000511105.1

PTPN13-208, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

TSL 3

Gene PTPN13, Length 645 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-208ENST00000511105 TMEM121BQ9BXQ6 578 aaPredicted RBP9.8□□□□□ -0.84
PTPN13-208ENST00000511105 CHGAP10645 457 aaKnown RBP9.79□□□□□ -0.84
PTPN13-208ENST00000511105 HAP1P54257 671 aaPredicted RBP9.78□□□□□ -0.84
PTPN13-208ENST00000511105 PPP1R37O75864 691 aa9.77□□□□□ -0.85
PTPN13-208ENST00000511105 BCANQ96GW7 911 aa9.76□□□□□ -0.85
PTPN13-208ENST00000511105 DCAF8L2P0C7V8 631 aa9.74□□□□□ -0.85
PTPN13-208ENST00000511105 SNPHO15079 494 aa9.73□□□□□ -0.85
PTPN13-208ENST00000511105 VSIG10Q8N0Z9 540 aa9.72□□□□□ -0.85
PTPN13-208ENST00000511105 HOXB3P14651 431 aaPredicted RBP9.71□□□□□ -0.86
PTPN13-208ENST00000511105 NKX1-1Q15270 411 aaPredicted RBP9.69□□□□□ -0.86
PTPN13-208ENST00000511105 HS6ST3Q8IZP7 471 aa9.69□□□□□ -0.86
PTPN13-208ENST00000511105 POTEB3A0JP26 581 aa9.66□□□□□ -0.86
PTPN13-208ENST00000511105 POTEBQ6S5H4 581 aa9.66□□□□□ -0.86
PTPN13-208ENST00000511105 FAM205CA6NFA0 338 aa9.65□□□□□ -0.86
PTPN13-208ENST00000511105 EMP3P54852 163 aa9.65□□□□□ -0.86
PTPN13-208ENST00000511105 ZNF710Q8N1W2 664 aa9.65□□□□□ -0.86
PTPN13-208ENST00000511105 C2orf72A6NCS6 295 aa9.63□□□□□ -0.87
PTPN13-208ENST00000511105 KHSRPQ92945 711 aaKnown RBP eCLIP9.63□□□□□ -0.87
PTPN13-208ENST00000511105 CCDC180Q9P1Z9 1646 aa9.61□□□□□ -0.87
PTPN13-208ENST00000511105 BBXQ8WY36 941 aaPredicted RBP9.61□□□□□ -0.87
PTPN13-208ENST00000511105 DOK7Q18PE1 504 aa9.59□□□□□ -0.87
PTPN13-208ENST00000511105 ARSIQ5FYB1 569 aa9.59□□□□□ -0.87
PTPN13-208ENST00000511105 HS3ST6Q96QI5 342 aa9.59□□□□□ -0.87
PTPN13-208ENST00000511105 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.58□□□□□ -0.88
PTPN13-208ENST00000511105 KIF3CO14782 793 aa9.57□□□□□ -0.88
PTPN13-208ENST00000511105 KRTAP3-3Q9BYR6 98 aa9.57□□□□□ -0.88
PTPN13-208ENST00000511105 KRTAP3-2Q9BYR7 98 aa9.57□□□□□ -0.88
PTPN13-208ENST00000511105 PRKCSHP14314 528 aaPredicted RBP9.56□□□□□ -0.88
PTPN13-208ENST00000511105 HOXB1P14653 301 aaPredicted RBP9.56□□□□□ -0.88
PTPN13-208ENST00000511105 GPR153Q6NV75 609 aa9.55□□□□□ -0.88
PTPN13-208ENST00000511105 TMC2Q8TDI7 906 aa9.55□□□□□ -0.88
PTPN13-208ENST00000511105 ERBB3P21860 1342 aa9.55□□□□□ -0.88
PTPN13-208ENST00000511105 KDM2AQ9Y2K7 1162 aa9.54□□□□□ -0.88
PTPN13-208ENST00000511105 RIMBP2O15034 1052 aa9.52□□□□□ -0.89
PTPN13-208ENST00000511105 GTPBP6O43824 516 aaPredicted RBP9.52□□□□□ -0.89
PTPN13-208ENST00000511105 VARS2Q5ST30 1063 aaKnown RBP9.51□□□□□ -0.89
PTPN13-208ENST00000511105 NUDT7P0C024 238 aa9.49□□□□□ -0.89
PTPN13-208ENST00000511105 PAXIP1Q6ZW49 1069 aaPredicted RBP9.48□□□□□ -0.89
PTPN13-208ENST00000511105 DNAJC5Q9H3Z4 198 aa9.48□□□□□ -0.89
PTPN13-208ENST00000511105 DSG2Q14126 1118 aa9.47□□□□□ -0.89
PTPN13-208ENST00000511105 PLPP6Q8IY26 295 aa9.47□□□□□ -0.89
PTPN13-208ENST00000511105 GPHNQ9NQX3 736 aaPredicted RBP9.45□□□□□ -0.9
PTPN13-208ENST00000511105 PCDHGA4Q9Y5G9 962 aa9.45□□□□□ -0.9
PTPN13-208ENST00000511105 TPRNQ4KMQ1 711 aa9.44□□□□□ -0.9
PTPN13-208ENST00000511105 ZSWIM6Q9HCJ5 1215 aa9.44□□□□□ -0.9
PTPN13-208ENST00000511105 CFAP44Q96MT7 982 aa9.43□□□□□ -0.9
PTPN13-208ENST00000511105 LHX6Q9UPM6 363 aa9.42□□□□□ -0.9
PTPN13-208ENST00000511105 NCKAP5LQ9HCH0 1330 aa9.41□□□□□ -0.9
PTPN13-208ENST00000511105 ZNF316A6NFI3 1004 aaPredicted RBP9.41□□□□□ -0.9
PTPN13-208ENST00000511105 FOXK1P85037 733 aa9.41□□□□□ -0.9
PTPN13-208ENST00000511105 CADPS2Q86UW7 1296 aa9.41□□□□□ -0.9
PTPN13-208ENST00000511105 SPRYD3Q8NCJ5 442 aa9.41□□□□□ -0.9
PTPN13-208ENST00000511105 UPF1Q92900 1129 aaKnown RBP eCLIP9.4□□□□□ -0.9
PTPN13-208ENST00000511105 LARP6Q9BRS8 491 aaKnown RBP9.38□□□□□ -0.91
PTPN13-208ENST00000511105 RYDENQ9NUL5 291 aaKnown RBP9.38□□□□□ -0.91
PTPN13-208ENST00000511105 CRISPLD2Q9H0B8 497 aa9.37□□□□□ -0.91
PTPN13-208ENST00000511105 AXIN2Q9Y2T1 843 aa9.37□□□□□ -0.91
PTPN13-208ENST00000511105 SLC34A2O95436 690 aa9.36□□□□□ -0.91
PTPN13-208ENST00000511105 ZNF687Q8N1G0 1237 aa9.36□□□□□ -0.91
PTPN13-208ENST00000511105 TSHZ2Q9NRE2 1034 aa9.36□□□□□ -0.91
PTPN13-208ENST00000511105 PPP1R15BQ5SWA1 713 aa9.35□□□□□ -0.91
PTPN13-208ENST00000511105 PDE4AP27815 886 aa9.34□□□□□ -0.91
PTPN13-208ENST00000511105 ANKRD13DQ6ZTN6 518 aa9.34□□□□□ -0.91
PTPN13-208ENST00000511105 PTCD2Q8WV60 388 aaKnown RBP9.34□□□□□ -0.91
PTPN13-208ENST00000511105 POTEEQ6S8J3 1075 aa9.33□□□□□ -0.92
PTPN13-208ENST00000511105 RNF166Q96A37 237 aaPredicted RBP9.32□□□□□ -0.92
PTPN13-208ENST00000511105 KDM4FA0A1W2PPD8 638 aa9.3□□□□□ -0.92
PTPN13-208ENST00000511105 OXER1Q8TDS5 423 aa9.28□□□□□ -0.92
PTPN13-208ENST00000511105 DDX27Q96GQ7 796 aaKnown RBP9.28□□□□□ -0.92
PTPN13-208ENST00000511105 TBC1D12O60347 775 aa9.27□□□□□ -0.93
PTPN13-208ENST00000511105 PSEN2P49810 448 aa9.26□□□□□ -0.93
PTPN13-208ENST00000511105 EMILIN3Q9NT22 766 aa9.25□□□□□ -0.93
PTPN13-208ENST00000511105 NBR1Q14596 966 aa9.24□□□□□ -0.93
PTPN13-208ENST00000511105 MYT1LQ9UL68 1186 aa9.24□□□□□ -0.93
PTPN13-208ENST00000511105 DMRTA1Q5VZB9 504 aa9.23□□□□□ -0.93
PTPN13-208ENST00000511105 MAP3K9P80192 1104 aa9.22□□□□□ -0.93
PTPN13-208ENST00000511105 LSM11P83369 360 aaKnown RBP eCLIP9.22□□□□□ -0.93
PTPN13-208ENST00000511105 MFSD10Q14728 455 aa9.22□□□□□ -0.93
PTPN13-208ENST00000511105 EVI5O60447 810 aa9.21□□□□□ -0.94
PTPN13-208ENST00000511105 ZNF454Q8N9F8 522 aa9.21□□□□□ -0.94
PTPN13-208ENST00000511105 RB1CC1Q8TDY2 1594 aa9.2□□□□□ -0.94
PTPN13-208ENST00000511105 ARHGAP33O14559 1287 aa9.19□□□□□ -0.94
PTPN13-208ENST00000511105 PPP4R3BQ5MIZ7 849 aa9.17□□□□□ -0.94
PTPN13-208ENST00000511105 KCNK17Q96T54 332 aa9.17□□□□□ -0.94
PTPN13-208ENST00000511105 DPYSL4O14531 572 aa9.16□□□□□ -0.94
PTPN13-208ENST00000511105 PSDA5PKW4 1024 aaPredicted RBP9.14□□□□□ -0.95
PTPN13-208ENST00000511105 PBX2P40425 430 aa9.14□□□□□ -0.95
PTPN13-208ENST00000511105 NACADO15069 1562 aa9.13□□□□□ -0.95
PTPN13-208ENST00000511105 ADGRD1Q6QNK2 874 aa9.13□□□□□ -0.95
PTPN13-208ENST00000511105 ANO8Q9HCE9 1232 aaPredicted RBP9.13□□□□□ -0.95
PTPN13-208ENST00000511105 PTGER2P43116 358 aa9.12□□□□□ -0.95
PTPN13-208ENST00000511105 FOSBP53539 338 aa9.12□□□□□ -0.95
PTPN13-208ENST00000511105 ADAM33Q9BZ11 813 aa9.12□□□□□ -0.95
PTPN13-208ENST00000511105 CAMK2BQ13554 666 aa9.09□□□□□ -0.95
PTPN13-208ENST00000511105 PCDHGA10Q9Y5H3 936 aa9.09□□□□□ -0.95
PTPN13-208ENST00000511105 DDX12PQ92771 950 aa9.08□□□□□ -0.96
PTPN13-208ENST00000511105 ZDHHC16Q969W1 377 aa9.08□□□□□ -0.96
PTPN13-208ENST00000511105 RBM33Q96EV2 1170 aaKnown RBP9.07□□□□□ -0.96
PTPN13-208ENST00000511105 JPH4Q96JJ6 628 aa9.07□□□□□ -0.96
PTPN13-208ENST00000511105 BCL2L12Q9HB09 334 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms