RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 FOXD4L1Q9NU39 408 aa14.05□□□□□ -0.16
USP53-207ENST00000510852 PTPRGP23470 1445 aa14.03□□□□□ -0.16
USP53-207ENST00000510852 BCCIPQ9P287 314 aaKnown RBP eCLIP14.03□□□□□ -0.16
USP53-207ENST00000510852 CASKIN1Q8WXD9 1431 aa14.01□□□□□ -0.17
USP53-207ENST00000510852 ATP1B4Q9UN42 357 aaPredicted RBP14.01□□□□□ -0.17
USP53-207ENST00000510852 PCF11O94913 1555 aaKnown RBP14□□□□□ -0.17
USP53-207ENST00000510852 BBXQ8WY36 941 aaPredicted RBP14□□□□□ -0.17
USP53-207ENST00000510852 FYCO1Q9BQS8 1478 aa13.99□□□□□ -0.17
USP53-207ENST00000510852 NPM1P06748 294 aaKnown RBP eCLIP13.99□□□□□ -0.17
USP53-207ENST00000510852 PLB1Q6P1J6 1458 aa13.98□□□□□ -0.17
USP53-207ENST00000510852 RSPH4AQ5TD94 716 aa13.97□□□□□ -0.17
USP53-207ENST00000510852 ARHGEF11O15085 1522 aa13.96□□□□□ -0.17
USP53-207ENST00000510852 C1orf115Q9H7X2 142 aa13.96□□□□□ -0.17
USP53-207ENST00000510852 ABCA8O94911 1581 aa13.95□□□□□ -0.18
USP53-207ENST00000510852 RAPGEF6Q8TEU7 1601 aa13.95□□□□□ -0.18
USP53-207ENST00000510852 UACAQ9BZF9 1416 aa13.94□□□□□ -0.18
USP53-207ENST00000510852 CCDC136Q96JN2 1154 aa13.94□□□□□ -0.18
USP53-207ENST00000510852 BRPF1P55201 1214 aaPredicted RBP13.93□□□□□ -0.18
USP53-207ENST00000510852 PPARGC1BQ86YN6 1023 aaKnown RBP13.93□□□□□ -0.18
USP53-207ENST00000510852 HECW1Q76N89 1606 aa13.93□□□□□ -0.18
USP53-207ENST00000510852 NUP153P49790 1475 aaKnown RBP13.93□□□□□ -0.18
USP53-207ENST00000510852 ARID3CA6NKF2 412 aa13.93□□□□□ -0.18
USP53-207ENST00000510852 PPP4R3CPQ6ZMV5 832 aa13.92□□□□□ -0.18
USP53-207ENST00000510852 EPRSP07814 1512 aaKnown RBP13.91□□□□□ -0.18
USP53-207ENST00000510852 PKD2Q13563 968 aa13.91□□□□□ -0.18
USP53-207ENST00000510852 MAP3K1Q13233 1512 aa13.9□□□□□ -0.18
USP53-207ENST00000510852 RIMBP3CA6NJZ7 1639 aa13.9□□□□□ -0.18
USP53-207ENST00000510852 RIMBP3BA6NNM3 1639 aa13.9□□□□□ -0.18
USP53-207ENST00000510852 RIMBP3Q9UFD9 1639 aa13.9□□□□□ -0.18
USP53-207ENST00000510852 IRX6P78412 446 aaPredicted RBP13.9□□□□□ -0.18
USP53-207ENST00000510852 ZNF428Q96B54 188 aa13.9□□□□□ -0.18
USP53-207ENST00000510852 KANK4Q5T7N3 995 aaPredicted RBP13.9□□□□□ -0.18
USP53-207ENST00000510852 CCDC18Q5T9S5 1454 aa13.89□□□□□ -0.19
USP53-207ENST00000510852 TIAM1Q13009 1591 aa13.89□□□□□ -0.19
USP53-207ENST00000510852 ABCC2Q92887 1545 aa13.89□□□□□ -0.19
USP53-207ENST00000510852 CDK13Q14004 1512 aaKnown RBP13.88□□□□□ -0.19
USP53-207ENST00000510852 LRRIQ1Q96JM4 1722 aa13.88□□□□□ -0.19
USP53-207ENST00000510852 UHRF1BP1LA0JNW5 1464 aa13.88□□□□□ -0.19
USP53-207ENST00000510852 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.87□□□□□ -0.19
USP53-207ENST00000510852 HNRNPUL2Q1KMD3 747 aaKnown RBP13.87□□□□□ -0.19
USP53-207ENST00000510852 DNAJC5Q9H3Z4 198 aa13.86□□□□□ -0.19
USP53-207ENST00000510852 CFAP43Q8NDM7 1665 aa13.86□□□□□ -0.19
USP53-207ENST00000510852 ATP10BO94823 1461 aa13.86□□□□□ -0.19
USP53-207ENST00000510852 CYB5RLQ6IPT4 315 aa13.86□□□□□ -0.19
USP53-207ENST00000510852 LRRC9Q6ZRR7 1453 aa13.85□□□□□ -0.19
USP53-207ENST00000510852 ZMYND15Q9H091 742 aa13.84□□□□□ -0.19
USP53-207ENST00000510852 BRPF3Q9ULD4 1205 aa13.84□□□□□ -0.19
USP53-207ENST00000510852 ADCY10Q96PN6 1610 aa13.84□□□□□ -0.19
USP53-207ENST00000510852 MTUS2Q5JR59 1369 aa13.83□□□□□ -0.2
USP53-207ENST00000510852 RSPH6AQ9H0K4 717 aa13.82□□□□□ -0.2
USP53-207ENST00000510852 KDM5BQ9UGL1 1544 aa13.82□□□□□ -0.2
USP53-207ENST00000510852 RAD21O60216 631 aa13.82□□□□□ -0.2
USP53-207ENST00000510852 ZNF326Q5BKZ1 582 aaKnown RBP13.81□□□□□ -0.2
USP53-207ENST00000510852 KCTD17Q8N5Z5 321 aa13.81□□□□□ -0.2
USP53-207ENST00000510852 MAGI3Q5TCQ9 1506 aa13.81□□□□□ -0.2
USP53-207ENST00000510852 RGS22Q8NE09 1264 aa13.8□□□□□ -0.2
USP53-207ENST00000510852 PLEKHD1A6NEE1 506 aa13.8□□□□□ -0.2
USP53-207ENST00000510852 ZNF692Q9BU19 519 aaPredicted RBP13.8□□□□□ -0.2
USP53-207ENST00000510852 ANO8Q9HCE9 1232 aaPredicted RBP13.8□□□□□ -0.2
USP53-207ENST00000510852 EHBP1L1Q8N3D4 1523 aa13.79□□□□□ -0.2
USP53-207ENST00000510852 ZFP91Q96JP5 570 aaPredicted RBP13.78□□□□□ -0.2
USP53-207ENST00000510852 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.78□□□□□ -0.2
USP53-207ENST00000510852 ZCCHC11Q5TAX3 1644 aaKnown RBP13.78□□□□□ -0.2
USP53-207ENST00000510852 TROQ12816 1431 aaPredicted RBP13.77□□□□□ -0.2
USP53-207ENST00000510852 TICAM2Q86XR7 235 aa13.77□□□□□ -0.21
USP53-207ENST00000510852 ZNF592Q92610 1267 aa13.77□□□□□ -0.21
USP53-207ENST00000510852 ZEB1P37275 1124 aaPredicted RBP13.76□□□□□ -0.21
USP53-207ENST00000510852 SPRYD3Q8NCJ5 442 aa13.75□□□□□ -0.21
USP53-207ENST00000510852 MTMR7Q9Y216 660 aa13.75□□□□□ -0.21
USP53-207ENST00000510852 A0A0U1RQG5 324 aaPredicted RBP13.74□□□□□ -0.21
USP53-207ENST00000510852 NCOA2Q15596 1464 aa13.73□□□□□ -0.21
USP53-207ENST00000510852 PHLDB1Q86UU1 1377 aa13.72□□□□□ -0.21
USP53-207ENST00000510852 RBM25P49756 843 aaKnown RBP13.72□□□□□ -0.21
USP53-207ENST00000510852 SUPT6HQ7KZ85 1726 aaKnown RBP13.71□□□□□ -0.21
USP53-207ENST00000510852 ASXL2Q76L83 1435 aa13.71□□□□□ -0.21
USP53-207ENST00000510852 CENPBP07199 599 aaPredicted RBP13.71□□□□□ -0.21
USP53-207ENST00000510852 KCNH8Q96L42 1107 aa13.71□□□□□ -0.22
USP53-207ENST00000510852 WDR7Q9Y4E6 1490 aa13.7□□□□□ -0.22
USP53-207ENST00000510852 FOXD4L5Q5VV16 416 aaPredicted RBP13.7□□□□□ -0.22
USP53-207ENST00000510852 TMED8Q6PL24 325 aaPredicted RBP13.7□□□□□ -0.22
USP53-207ENST00000510852 FOXD4L4Q8WXT5 416 aaPredicted RBP13.7□□□□□ -0.22
USP53-207ENST00000510852 KIF14Q15058 1648 aa13.7□□□□□ -0.22
USP53-207ENST00000510852 AAMPQ13685 434 aa13.69□□□□□ -0.22
USP53-207ENST00000510852 NAP1L5Q96NT1 182 aaPredicted RBP13.69□□□□□ -0.22
USP53-207ENST00000510852 CWC22Q9HCG8 908 aaKnown RBP13.69□□□□□ -0.22
USP53-207ENST00000510852 CERS3Q8IU89 383 aa13.67□□□□□ -0.22
USP53-207ENST00000510852 ABCC10Q5T3U5 1492 aa13.67□□□□□ -0.22
USP53-207ENST00000510852 CCNB3Q8WWL7 1395 aa13.67□□□□□ -0.22
USP53-207ENST00000510852 FAM177A1Q8N128 213 aaPredicted RBP13.66□□□□□ -0.22
USP53-207ENST00000510852 MAPKBP1O60336 1514 aa13.66□□□□□ -0.22
USP53-207ENST00000510852 MYOM3Q5VTT5 1437 aa13.66□□□□□ -0.22
USP53-207ENST00000510852 CLSTN1O94985 981 aa13.65□□□□□ -0.22
USP53-207ENST00000510852 RRBP1Q9P2E9 1410 aaKnown RBP13.65□□□□□ -0.22
USP53-207ENST00000510852 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.64□□□□□ -0.23
USP53-207ENST00000510852 GPATCH8Q9UKJ3 1502 aaKnown RBP13.64□□□□□ -0.23
USP53-207ENST00000510852 PSMD1Q99460 953 aa13.63□□□□□ -0.23
USP53-207ENST00000510852 FGD6Q6ZV73 1430 aa13.63□□□□□ -0.23
USP53-207ENST00000510852 PCGF6Q9BYE7 350 aa13.62□□□□□ -0.23
USP53-207ENST00000510852 USP35Q9P2H5 1018 aa13.62□□□□□ -0.23
USP53-207ENST00000510852 TTC37Q6PGP7 1564 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms