RNA–Protein interactions for RNA: ENST00000509857.5

TRAPPC11-206, Transcript of trafficking protein particle complex 11, humanhuman

TSL 4

Gene TRAPPC11, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC11-206ENST00000509857 KDM2AQ9Y2K7 1162 aa17.05■□□□□ 0.32
TRAPPC11-206ENST00000509857 KIF3CO14782 793 aa17.01■□□□□ 0.31
TRAPPC11-206ENST00000509857 PDE4AP27815 886 aa17.01■□□□□ 0.31
TRAPPC11-206ENST00000509857 TMEM92Q6UXU6 159 aa17.01■□□□□ 0.31
TRAPPC11-206ENST00000509857 MAMSTRQ6ZN01 415 aa17.01■□□□□ 0.31
TRAPPC11-206ENST00000509857 GPHNQ9NQX3 736 aaPredicted RBP17.01■□□□□ 0.31
TRAPPC11-206ENST00000509857 EIF2AK3Q9NZJ5 1116 aaKnown RBP17■□□□□ 0.31
TRAPPC11-206ENST00000509857 MFSD10Q14728 455 aa16.99■□□□□ 0.31
TRAPPC11-206ENST00000509857 LHX8Q68G74 356 aa16.97■□□□□ 0.31
TRAPPC11-206ENST00000509857 TMC2Q8TDI7 906 aa16.97■□□□□ 0.31
TRAPPC11-206ENST00000509857 SCUBE2Q9NQ36 999 aa16.97■□□□□ 0.31
TRAPPC11-206ENST00000509857 C2orf72A6NCS6 295 aa16.95■□□□□ 0.3
TRAPPC11-206ENST00000509857 LARP6Q9BRS8 491 aaKnown RBP16.94■□□□□ 0.3
TRAPPC11-206ENST00000509857 DDX27Q96GQ7 796 aaKnown RBP16.91■□□□□ 0.3
TRAPPC11-206ENST00000509857 FOXK1P85037 733 aa16.9■□□□□ 0.3
TRAPPC11-206ENST00000509857 OTUD5Q96G74 571 aa16.88■□□□□ 0.29
TRAPPC11-206ENST00000509857 DSG2Q14126 1118 aa16.87■□□□□ 0.29
TRAPPC11-206ENST00000509857 WDR70Q9NW82 654 aa16.87■□□□□ 0.29
TRAPPC11-206ENST00000509857 PPP1R15BQ5SWA1 713 aa16.86■□□□□ 0.29
TRAPPC11-206ENST00000509857 SLAIN1Q8ND83 568 aa16.84■□□□□ 0.29
TRAPPC11-206ENST00000509857 CAMK2BQ13554 666 aa16.8■□□□□ 0.28
TRAPPC11-206ENST00000509857 PLPP6Q8IY26 295 aa16.8■□□□□ 0.28
TRAPPC11-206ENST00000509857 E2F4Q16254 413 aa16.77■□□□□ 0.28
TRAPPC11-206ENST00000509857 P3H3Q8IVL6 736 aa16.73■□□□□ 0.27
TRAPPC11-206ENST00000509857 KCNV2Q8TDN2 545 aa16.71■□□□□ 0.27
TRAPPC11-206ENST00000509857 SLC34A2O95436 690 aa16.69■□□□□ 0.26
TRAPPC11-206ENST00000509857 ARIH1Q9Y4X5 557 aaPredicted RBP16.69■□□□□ 0.26
TRAPPC11-206ENST00000509857 EMILIN3Q9NT22 766 aa16.67■□□□□ 0.26
TRAPPC11-206ENST00000509857 HOXB3P14651 431 aaPredicted RBP16.65■□□□□ 0.26
TRAPPC11-206ENST00000509857 OXER1Q8TDS5 423 aa16.63■□□□□ 0.25
TRAPPC11-206ENST00000509857 PTCD2Q8WV60 388 aaKnown RBP16.62■□□□□ 0.25
TRAPPC11-206ENST00000509857 ARHGEF1Q92888 912 aaKnown RBP16.62■□□□□ 0.25
TRAPPC11-206ENST00000509857 DOK7Q18PE1 504 aa16.61■□□□□ 0.25
TRAPPC11-206ENST00000509857 SNPHO15079 494 aa16.6■□□□□ 0.25
TRAPPC11-206ENST00000509857 ZSWIM6Q9HCJ5 1215 aa16.55■□□□□ 0.24
TRAPPC11-206ENST00000509857 UPF1Q92900 1129 aaKnown RBP eCLIP16.54■□□□□ 0.24
TRAPPC11-206ENST00000509857 DPYSL4O14531 572 aa16.53■□□□□ 0.24
TRAPPC11-206ENST00000509857 RIMBP2O15034 1052 aa16.52■□□□□ 0.24
TRAPPC11-206ENST00000509857 PCDHGA4Q9Y5G9 962 aa16.52■□□□□ 0.24
TRAPPC11-206ENST00000509857 TBC1D12O60347 775 aa16.5■□□□□ 0.23
TRAPPC11-206ENST00000509857 MAP3K9P80192 1104 aa16.48■□□□□ 0.23
TRAPPC11-206ENST00000509857 PDIA6Q15084 440 aa16.48■□□□□ 0.23
TRAPPC11-206ENST00000509857 GPR153Q6NV75 609 aa16.47■□□□□ 0.23
TRAPPC11-206ENST00000509857 ZNF710Q8N1W2 664 aa16.47■□□□□ 0.23
TRAPPC11-206ENST00000509857 SPDYE16A6NNV3 312 aaPredicted RBP16.46■□□□□ 0.23
TRAPPC11-206ENST00000509857 KDM4FA0A1W2PPD8 638 aa16.44■□□□□ 0.22
TRAPPC11-206ENST00000509857 HOXB1P14653 301 aaPredicted RBP16.41■□□□□ 0.22
TRAPPC11-206ENST00000509857 ARSIQ5FYB1 569 aa16.41■□□□□ 0.22
TRAPPC11-206ENST00000509857 EVI5O60447 810 aa16.4■□□□□ 0.22
TRAPPC11-206ENST00000509857 NBR1Q14596 966 aa16.4■□□□□ 0.22
TRAPPC11-206ENST00000509857 BCANQ96GW7 911 aa16.4■□□□□ 0.22
TRAPPC11-206ENST00000509857 ANO8Q9HCE9 1232 aaPredicted RBP16.4■□□□□ 0.22
TRAPPC11-206ENST00000509857 ZNF316A6NFI3 1004 aaPredicted RBP16.37■□□□□ 0.21
TRAPPC11-206ENST00000509857 KHSRPQ92945 711 aaKnown RBP eCLIP16.37■□□□□ 0.21
TRAPPC11-206ENST00000509857 ST18O60284 1047 aa16.35■□□□□ 0.21
TRAPPC11-206ENST00000509857 SEMA3EO15041 775 aa16.34■□□□□ 0.21
TRAPPC11-206ENST00000509857 NUDT7P0C024 238 aa16.34■□□□□ 0.21
TRAPPC11-206ENST00000509857 TESPA1A2RU30 521 aaPredicted RBP16.33■□□□□ 0.2
TRAPPC11-206ENST00000509857 PTGER2P43116 358 aa16.33■□□□□ 0.2
TRAPPC11-206ENST00000509857 LCE2DQ5TA82 110 aaPredicted RBP16.29■□□□□ 0.2
TRAPPC11-206ENST00000509857 FAM163AQ96GL9 167 aaPredicted RBP16.28■□□□□ 0.2
TRAPPC11-206ENST00000509857 MLLT3P42568 568 aaPredicted RBP16.25■□□□□ 0.19
TRAPPC11-206ENST00000509857 LHX6Q9UPM6 363 aa16.23■□□□□ 0.19
TRAPPC11-206ENST00000509857 JPH4Q96JJ6 628 aa16.22■□□□□ 0.19
TRAPPC11-206ENST00000509857 PHF14O94880 888 aa16.21■□□□□ 0.19
TRAPPC11-206ENST00000509857 DDX12PQ92771 950 aa16.21■□□□□ 0.19
TRAPPC11-206ENST00000509857 FOSBP53539 338 aa16.2■□□□□ 0.18
TRAPPC11-206ENST00000509857 PSDA5PKW4 1024 aaPredicted RBP16.19■□□□□ 0.18
TRAPPC11-206ENST00000509857 SMYD5Q6GMV2 418 aa16.19■□□□□ 0.18
TRAPPC11-206ENST00000509857 GRXCR2A6NFK2 248 aa16.17■□□□□ 0.18
TRAPPC11-206ENST00000509857 EMP3P54852 163 aa16.17■□□□□ 0.18
TRAPPC11-206ENST00000509857 MARVELD3Q96A59 401 aa16.17■□□□□ 0.18
TRAPPC11-206ENST00000509857 EPAS1Q99814 870 aa16.17■□□□□ 0.18
TRAPPC11-206ENST00000509857 PCDHGA10Q9Y5H3 936 aa16.17■□□□□ 0.18
TRAPPC11-206ENST00000509857 OSBPP22059 807 aa16.15■□□□□ 0.18
TRAPPC11-206ENST00000509857 TULP1O00294 542 aaPredicted RBP16.14■□□□□ 0.17
TRAPPC11-206ENST00000509857 ZNF454Q8N9F8 522 aa16.14■□□□□ 0.17
TRAPPC11-206ENST00000509857 TYW1BQ6NUM6 668 aa16.13■□□□□ 0.17
TRAPPC11-206ENST00000509857 FBXW7Q969H0 707 aa16.13■□□□□ 0.17
TRAPPC11-206ENST00000509857 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.11■□□□□ 0.17
TRAPPC11-206ENST00000509857 ERBB3P21860 1342 aa16.11■□□□□ 0.17
TRAPPC11-206ENST00000509857 PPP4R3BQ5MIZ7 849 aa16.1■□□□□ 0.17
TRAPPC11-206ENST00000509857 ZDHHC16Q969W1 377 aa16.1■□□□□ 0.17
TRAPPC11-206ENST00000509857 PRIM1P49642 420 aaKnown RBP16.09■□□□□ 0.17
TRAPPC11-206ENST00000509857 EN1Q05925 392 aaPredicted RBP16.08■□□□□ 0.16
TRAPPC11-206ENST00000509857 VARS2Q5ST30 1063 aaKnown RBP16.08■□□□□ 0.16
TRAPPC11-206ENST00000509857 FAM205CA6NFA0 338 aa16.05■□□□□ 0.16
TRAPPC11-206ENST00000509857 LMOD2Q6P5Q4 547 aa16.05■□□□□ 0.16
TRAPPC11-206ENST00000509857 ADAM33Q9BZ11 813 aa16.04■□□□□ 0.16
TRAPPC11-206ENST00000509857 POTEB3A0JP26 581 aa16.03■□□□□ 0.16
TRAPPC11-206ENST00000509857 RBM26Q5T8P6 1007 aaKnown RBP16.03■□□□□ 0.16
TRAPPC11-206ENST00000509857 POTEBQ6S5H4 581 aa16.03■□□□□ 0.16
TRAPPC11-206ENST00000509857 HS3ST6Q96QI5 342 aa16.03■□□□□ 0.16
TRAPPC11-206ENST00000509857 BCL2L12Q9HB09 334 aa16.03■□□□□ 0.16
TRAPPC11-206ENST00000509857 MAP3K7O43318 606 aa15.99■□□□□ 0.15
TRAPPC11-206ENST00000509857 ZNF687Q8N1G0 1237 aa15.99■□□□□ 0.15
TRAPPC11-206ENST00000509857 RBM33Q96EV2 1170 aaKnown RBP15.99■□□□□ 0.15
TRAPPC11-206ENST00000509857 C6orf132Q5T0Z8 1188 aa15.96■□□□□ 0.15
TRAPPC11-206ENST00000509857 TSR1Q2NL82 804 aaKnown RBP15.95■□□□□ 0.14
TRAPPC11-206ENST00000509857 PBX2P40425 430 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms