RNA–Protein interactions for RNA: ENST00000509389.5

HMGCL-208, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

TSL 1 (best)

Gene HMGCL, Length 1,379 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-208ENST00000509389 YEATS2Q9ULM3 1422 aa23.81■■□□□ 1.4
HMGCL-208ENST00000509389 MAGI2Q86UL8 1455 aa23.81■■□□□ 1.4
HMGCL-208ENST00000509389 POGZQ7Z3K3 1410 aa23.79■■□□□ 1.4
HMGCL-208ENST00000509389 EFCAB2Q5VUJ9 269 aa23.79■■□□□ 1.4
HMGCL-208ENST00000509389 ILDR1Q86SU0 546 aaPredicted RBP23.78■■□□□ 1.4
HMGCL-208ENST00000509389 SIGLEC1Q9BZZ2 1709 aa23.78■■□□□ 1.4
HMGCL-208ENST00000509389 RIMS1Q86UR5 1692 aaKnown RBP23.77■■□□□ 1.39
HMGCL-208ENST00000509389 CLIP1P30622 1438 aa23.76■■□□□ 1.39
HMGCL-208ENST00000509389 CASKIN1Q8WXD9 1431 aa23.75■■□□□ 1.39
HMGCL-208ENST00000509389 PCF11O94913 1555 aaKnown RBP23.74■■□□□ 1.39
HMGCL-208ENST00000509389 ARHGAP5Q13017 1502 aa23.72■■□□□ 1.39
HMGCL-208ENST00000509389 CCDC18Q5T9S5 1454 aa23.7■■□□□ 1.38
HMGCL-208ENST00000509389 CDC42BPBQ9Y5S2 1711 aa23.69■■□□□ 1.38
HMGCL-208ENST00000509389 ATP10AO60312 1499 aa23.69■■□□□ 1.38
HMGCL-208ENST00000509389 MLECQ14165 292 aa23.67■■□□□ 1.38
HMGCL-208ENST00000509389 ZNF518AQ6AHZ1 1483 aa23.67■■□□□ 1.38
HMGCL-208ENST00000509389 AFAP1Q8N556 730 aa23.65■■□□□ 1.38
HMGCL-208ENST00000509389 LMTK3Q96Q04 1460 aa23.65■■□□□ 1.38
HMGCL-208ENST00000509389 KDM5CP41229 1560 aa23.65■■□□□ 1.38
HMGCL-208ENST00000509389 C9orf84Q5VXU9 1444 aa23.65■■□□□ 1.38
HMGCL-208ENST00000509389 FER1L4A9Z1Z3 1794 aa23.64■■□□□ 1.37
HMGCL-208ENST00000509389 PREX2Q70Z35 1606 aa23.64■■□□□ 1.37
HMGCL-208ENST00000509389 FYCO1Q9BQS8 1478 aa23.64■■□□□ 1.37
HMGCL-208ENST00000509389 PLPPR3Q6T4P5 718 aa23.64■■□□□ 1.37
HMGCL-208ENST00000509389 ARHGEF12Q9NZN5 1544 aa23.6■■□□□ 1.37
HMGCL-208ENST00000509389 CDC42BPAQ5VT25 1732 aa23.58■■□□□ 1.36
HMGCL-208ENST00000509389 ABCC1P33527 1531 aa23.58■■□□□ 1.36
HMGCL-208ENST00000509389 MYT1LQ9UL68 1186 aa23.57■■□□□ 1.36
HMGCL-208ENST00000509389 DIP2CQ9Y2E4 1556 aa23.56■■□□□ 1.36
HMGCL-208ENST00000509389 TRAPPC8Q9Y2L5 1435 aa23.55■■□□□ 1.36
HMGCL-208ENST00000509389 ITSN2Q9NZM3 1697 aa23.55■■□□□ 1.36
HMGCL-208ENST00000509389 MLH3Q9UHC1 1453 aa23.55■■□□□ 1.36
HMGCL-208ENST00000509389 ABCA6Q8N139 1617 aa23.54■■□□□ 1.36
HMGCL-208ENST00000509389 HSPA2P54652 639 aa23.53■■□□□ 1.36
HMGCL-208ENST00000509389 REREQ9P2R6 1566 aa23.52■■□□□ 1.36
HMGCL-208ENST00000509389 GPATCH8Q9UKJ3 1502 aaKnown RBP23.48■■□□□ 1.35
HMGCL-208ENST00000509389 KIDINS220Q9ULH0 1771 aa23.48■■□□□ 1.35
HMGCL-208ENST00000509389 CEBPAP49715 358 aaPredicted RBP23.48■■□□□ 1.35
HMGCL-208ENST00000509389 ZNF777Q9ULD5 760 aaPredicted RBP23.47■■□□□ 1.35
HMGCL-208ENST00000509389 SAMD9LQ8IVG5 1584 aa23.47■■□□□ 1.35
HMGCL-208ENST00000509389 AGLP35573 1532 aa23.45■■□□□ 1.34
HMGCL-208ENST00000509389 PREX1Q8TCU6 1659 aa23.44■■□□□ 1.34
HMGCL-208ENST00000509389 FBXO41Q8TF61 875 aa23.43■■□□□ 1.34
HMGCL-208ENST00000509389 SYCP2Q9BX26 1530 aa23.43■■□□□ 1.34
HMGCL-208ENST00000509389 MTUS2Q5JR59 1369 aa23.4■■□□□ 1.34
HMGCL-208ENST00000509389 HNRNPMP52272 730 aaKnown RBP eCLIP23.4■■□□□ 1.34
HMGCL-208ENST00000509389 CCNB3Q8WWL7 1395 aa23.4■■□□□ 1.34
HMGCL-208ENST00000509389 CFDP1Q9UEE9 299 aaPredicted RBP23.4■■□□□ 1.34
HMGCL-208ENST00000509389 SETD1BQ9UPS6 1966 aaKnown RBP23.39■■□□□ 1.33
HMGCL-208ENST00000509389 CEP162Q5TB80 1403 aa23.37■■□□□ 1.33
HMGCL-208ENST00000509389 KIAA1107Q9UPP5 1409 aa23.37■■□□□ 1.33
HMGCL-208ENST00000509389 C3P01024 1663 aa23.37■■□□□ 1.33
HMGCL-208ENST00000509389 SPAG9O60271 1321 aaKnown RBP23.37■■□□□ 1.33
HMGCL-208ENST00000509389 PLEKHH2Q8IVE3 1493 aa23.36■■□□□ 1.33
HMGCL-208ENST00000509389 ESF1Q9H501 851 aaKnown RBP23.35■■□□□ 1.33
HMGCL-208ENST00000509389 UHRF1BP1Q6BDS2 1440 aa23.33■■□□□ 1.33
HMGCL-208ENST00000509389 ATP7AQ04656 1500 aa23.33■■□□□ 1.32
HMGCL-208ENST00000509389 EHBP1L1Q8N3D4 1523 aa23.33■■□□□ 1.32
HMGCL-208ENST00000509389 TIAM1Q13009 1591 aa23.32■■□□□ 1.32
HMGCL-208ENST00000509389 SUPT6HQ7KZ85 1726 aaKnown RBP23.31■■□□□ 1.32
HMGCL-208ENST00000509389 INO80Q9ULG1 1556 aaPredicted RBP23.31■■□□□ 1.32
HMGCL-208ENST00000509389 CNTLNQ9NXG0 1405 aa23.3■■□□□ 1.32
HMGCL-208ENST00000509389 STRCQ7RTU9 1775 aa23.29■■□□□ 1.32
HMGCL-208ENST00000509389 ZNF644Q9H582 1327 aaPredicted RBP23.28■■□□□ 1.32
HMGCL-208ENST00000509389 A2MP01023 1474 aa23.26■■□□□ 1.31
HMGCL-208ENST00000509389 PLXNC1O60486 1568 aa23.26■■□□□ 1.31
HMGCL-208ENST00000509389 MROH2AA6NES4 1674 aa23.25■■□□□ 1.31
HMGCL-208ENST00000509389 MBD5Q9P267 1494 aa23.24■■□□□ 1.31
HMGCL-208ENST00000509389 CERKQ8TCT0 537 aa23.23■■□□□ 1.31
HMGCL-208ENST00000509389 DMRT2Q9Y5R5 561 aa23.22■■□□□ 1.31
HMGCL-208ENST00000509389 ADGBQ8N7X0 1667 aa23.21■■□□□ 1.31
HMGCL-208ENST00000509389 ZMYM3Q14202 1370 aa23.21■■□□□ 1.31
HMGCL-208ENST00000509389 NCOA2Q15596 1464 aa23.2■■□□□ 1.3
HMGCL-208ENST00000509389 CLTCQ00610 1675 aaKnown RBP23.19■■□□□ 1.3
HMGCL-208ENST00000509389 LOC105371045A0A1W2PR82 267 aa23.19■■□□□ 1.3
HMGCL-208ENST00000509389 NPATQ14207 1427 aa23.18■■□□□ 1.3
HMGCL-208ENST00000509389 GGT6Q6P531 493 aa23.17■■□□□ 1.3
HMGCL-208ENST00000509389 RTEL1-TNFRSF6BF6WH68 1400 aa23.16■■□□□ 1.3
HMGCL-208ENST00000509389 CAMSAP2Q08AD1 1489 aa23.14■■□□□ 1.29
HMGCL-208ENST00000509389 PTPRTO14522 1441 aa23.14■■□□□ 1.29
HMGCL-208ENST00000509389 VPS8Q8N3P4 1428 aa23.13■■□□□ 1.29
HMGCL-208ENST00000509389 CCDC141Q6ZP82 1450 aa23.12■■□□□ 1.29
HMGCL-208ENST00000509389 PPP6R1Q9UPN7 881 aa23.12■■□□□ 1.29
HMGCL-208ENST00000509389 NCOA1Q15788 1441 aa23.11■■□□□ 1.29
HMGCL-208ENST00000509389 DHX29Q7Z478 1369 aaKnown RBP23.11■■□□□ 1.29
HMGCL-208ENST00000509389 PTPRKQ15262 1439 aa23.1■■□□□ 1.29
HMGCL-208ENST00000509389 CAMSAP1Q5T5Y3 1602 aa23.09■■□□□ 1.29
HMGCL-208ENST00000509389 RSPH4AQ5TD94 716 aa23.09■■□□□ 1.29
HMGCL-208ENST00000509389 LRRC9Q6ZRR7 1453 aa23.08■■□□□ 1.29
HMGCL-208ENST00000509389 MYO3AQ8NEV4 1616 aa23.07■■□□□ 1.28
HMGCL-208ENST00000509389 ZNF142P52746 1687 aaPredicted RBP23.06■■□□□ 1.28
HMGCL-208ENST00000509389 ARHGEF5Q12774 1597 aa23.05■■□□□ 1.28
HMGCL-208ENST00000509389 KIF3BO15066 747 aa23.03■■□□□ 1.28
HMGCL-208ENST00000509389 CEP170BQ9Y4F5 1589 aaPredicted RBP23.02■■□□□ 1.28
HMGCL-208ENST00000509389 MAP3K1Q13233 1512 aa23.02■■□□□ 1.28
HMGCL-208ENST00000509389 KANK4Q5T7N3 995 aaPredicted RBP23.01■■□□□ 1.27
HMGCL-208ENST00000509389 NCKAP5LQ9HCH0 1330 aa23.01■■□□□ 1.27
HMGCL-208ENST00000509389 TSPY4P0CV99 314 aa23.01■■□□□ 1.27
HMGCL-208ENST00000509389 TSPY10P0CW01 314 aa23.01■■□□□ 1.27
HMGCL-208ENST00000509389 LTBP4Q8N2S1 1624 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms