RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 ZSWIM6Q9HCJ5 1215 aa11.33□□□□□ -0.6
NUP54-206ENST00000508465 BCL11BQ9C0K0 894 aaPredicted RBP11.31□□□□□ -0.6
NUP54-206ENST00000508465 TMEM92Q6UXU6 159 aa11.3□□□□□ -0.6
NUP54-206ENST00000508465 STK24Q9Y6E0 443 aa11.29□□□□□ -0.6
NUP54-206ENST00000508465 ECM2O94769 699 aaPredicted RBP11.26□□□□□ -0.61
NUP54-206ENST00000508465 VARS2Q5ST30 1063 aaKnown RBP11.26□□□□□ -0.61
NUP54-206ENST00000508465 STK25O00506 426 aa11.24□□□□□ -0.61
NUP54-206ENST00000508465 GPR153Q6NV75 609 aa11.23□□□□□ -0.61
NUP54-206ENST00000508465 FBXO22Q8NEZ5 403 aa11.23□□□□□ -0.61
NUP54-206ENST00000508465 ZNF687Q8N1G0 1237 aa11.21□□□□□ -0.61
NUP54-206ENST00000508465 MFRPQ9BY79 579 aa11.19□□□□□ -0.62
NUP54-206ENST00000508465 ARSIQ5FYB1 569 aa11.18□□□□□ -0.62
NUP54-206ENST00000508465 ZNF316A6NFI3 1004 aaPredicted RBP11.12□□□□□ -0.63
NUP54-206ENST00000508465 RNF166Q96A37 237 aaPredicted RBP11.12□□□□□ -0.63
NUP54-206ENST00000508465 PKD2Q13563 968 aa11.11□□□□□ -0.63
NUP54-206ENST00000508465 C2orf72A6NCS6 295 aa11.1□□□□□ -0.63
NUP54-206ENST00000508465 RGL2O15211 777 aa11.1□□□□□ -0.63
NUP54-206ENST00000508465 MYT1LQ9UL68 1186 aa11.1□□□□□ -0.63
NUP54-206ENST00000508465 KIF3CO14782 793 aa11.09□□□□□ -0.63
NUP54-206ENST00000508465 PTGER2P43116 358 aa11.09□□□□□ -0.63
NUP54-206ENST00000508465 TMC2Q8TDI7 906 aa11.09□□□□□ -0.63
NUP54-206ENST00000508465 KHSRPQ92945 711 aaKnown RBP eCLIP11.08□□□□□ -0.641e-6■■■□□ 15.4
NUP54-206ENST00000508465 ANKRD13DQ6ZTN6 518 aa11.06□□□□□ -0.64
NUP54-206ENST00000508465 SLC34A2O95436 690 aa11.04□□□□□ -0.64
NUP54-206ENST00000508465 NUDT7P0C024 238 aa11.03□□□□□ -0.64
NUP54-206ENST00000508465 PCDHGA4Q9Y5G9 962 aa11.01□□□□□ -0.65
NUP54-206ENST00000508465 PBX2P40425 430 aa11□□□□□ -0.65
NUP54-206ENST00000508465 LSM11P83369 360 aaKnown RBP eCLIP11□□□□□ -0.65
NUP54-206ENST00000508465 LHX6Q9UPM6 363 aa10.98□□□□□ -0.65
NUP54-206ENST00000508465 PPP1R37O75864 691 aa10.97□□□□□ -0.65
NUP54-206ENST00000508465 PSDA5PKW4 1024 aaPredicted RBP10.94□□□□□ -0.66
NUP54-206ENST00000508465 HS6ST3Q8IZP7 471 aa10.91□□□□□ -0.66
NUP54-206ENST00000508465 AXIN2Q9Y2T1 843 aa10.9□□□□□ -0.66
NUP54-206ENST00000508465 TBC1D12O60347 775 aa10.89□□□□□ -0.67
NUP54-206ENST00000508465 FOXK1P85037 733 aa10.89□□□□□ -0.67
NUP54-206ENST00000508465 PTCD2Q8WV60 388 aaKnown RBP10.89□□□□□ -0.67
NUP54-206ENST00000508465 ARHGAP33O14559 1287 aa10.88□□□□□ -0.67
NUP54-206ENST00000508465 GPHNQ9NQX3 736 aaPredicted RBP10.88□□□□□ -0.67
NUP54-206ENST00000508465 PLPP6Q8IY26 295 aa10.87□□□□□ -0.67
NUP54-206ENST00000508465 NISCHQ9Y2I1 1504 aa10.86□□□□□ -0.67
NUP54-206ENST00000508465 CHGAP10645 457 aaKnown RBP10.86□□□□□ -0.67
NUP54-206ENST00000508465 POTEEQ6S8J3 1075 aa10.86□□□□□ -0.67
NUP54-206ENST00000508465 RYDENQ9NUL5 291 aaKnown RBP10.84□□□□□ -0.67
NUP54-206ENST00000508465 ADGRD1Q6QNK2 874 aa10.82□□□□□ -0.68
NUP54-206ENST00000508465 KDM4FA0A1W2PPD8 638 aa10.81□□□□□ -0.68
NUP54-206ENST00000508465 DSG2Q14126 1118 aa10.81□□□□□ -0.68
NUP54-206ENST00000508465 PPP4R3BQ5MIZ7 849 aa10.81□□□□□ -0.68
NUP54-206ENST00000508465 HCSTQ9UBK5 93 aa10.8□□□□□ -0.68
NUP54-206ENST00000508465 TK2O00142 265 aa10.79□□□□□ -0.68
NUP54-206ENST00000508465 KCNH8Q96L42 1107 aa10.79□□□□□ -0.68
NUP54-206ENST00000508465 STAC3Q96MF2 364 aa10.78□□□□□ -0.68
NUP54-206ENST00000508465 DNAJC5Q9H3Z4 198 aa10.76□□□□□ -0.69
NUP54-206ENST00000508465 PSEN2P49810 448 aa10.74□□□□□ -0.69
NUP54-206ENST00000508465 DMRTA1Q5VZB9 504 aa10.73□□□□□ -0.69
NUP54-206ENST00000508465 PLA2G2EQ9NZK7 142 aa10.72□□□□□ -0.69
NUP54-206ENST00000508465 HRO43593 1189 aa10.71□□□□□ -0.69
NUP54-206ENST00000508465 NKX1-1Q15270 411 aaPredicted RBP10.71□□□□□ -0.69
NUP54-206ENST00000508465 PDE4AP27815 886 aa10.7□□□□□ -0.7
NUP54-206ENST00000508465 OXER1Q8TDS5 423 aa10.7□□□□□ -0.7
NUP54-206ENST00000508465 UPF1Q92900 1129 aaKnown RBP eCLIP10.7□□□□□ -0.71e-7■□□□□ 10.5
NUP54-206ENST00000508465 KCNK17Q96T54 332 aa10.69□□□□□ -0.7
NUP54-206ENST00000508465 PPP1R15BQ5SWA1 713 aa10.68□□□□□ -0.7
NUP54-206ENST00000508465 CRISPLD2Q9H0B8 497 aa10.68□□□□□ -0.7
NUP54-206ENST00000508465 ZNF454Q8N9F8 522 aa10.66□□□□□ -0.7
NUP54-206ENST00000508465 KCTD12Q96CX2 325 aaKnown RBP10.66□□□□□ -0.7
NUP54-206ENST00000508465 BCL2L12Q9HB09 334 aa10.62□□□□□ -0.71
NUP54-206ENST00000508465 VPS9D1Q9Y2B5 631 aa10.62□□□□□ -0.71
NUP54-206ENST00000508465 PTPREP23469 700 aa10.61□□□□□ -0.71
NUP54-206ENST00000508465 SLC4A5Q9BY07 1137 aa10.6□□□□□ -0.71
NUP54-206ENST00000508465 NCKAP5LQ9HCH0 1330 aa10.59□□□□□ -0.71
NUP54-206ENST00000508465 FOSBP53539 338 aa10.59□□□□□ -0.71
NUP54-206ENST00000508465 LARP6Q9BRS8 491 aaKnown RBP10.59□□□□□ -0.71
NUP54-206ENST00000508465 ANO8Q9HCE9 1232 aaPredicted RBP10.59□□□□□ -0.71
NUP54-206ENST00000508465 DDX27Q96GQ7 796 aaKnown RBP10.58□□□□□ -0.72
NUP54-206ENST00000508465 GTPBP6O43824 516 aaPredicted RBP10.57□□□□□ -0.72
NUP54-206ENST00000508465 EVI5O60447 810 aa10.57□□□□□ -0.72
NUP54-206ENST00000508465 MAP3K9P80192 1104 aa10.57□□□□□ -0.72
NUP54-206ENST00000508465 GOLGA8CPA6NN73 597 aa10.56□□□□□ -0.72
NUP54-206ENST00000508465 JPH4Q96JJ6 628 aa10.56□□□□□ -0.72
NUP54-206ENST00000508465 PTPN5P54829 565 aa10.55□□□□□ -0.72
NUP54-206ENST00000508465 ZDHHC16Q969W1 377 aa10.55□□□□□ -0.72
NUP54-206ENST00000508465 DCAF8L2P0C7V8 631 aa10.54□□□□□ -0.72
NUP54-206ENST00000508465 BHMG1C9JSJ3 638 aaPredicted RBP10.52□□□□□ -0.73
NUP54-206ENST00000508465 MRPL50Q8N5N7 158 aaKnown RBP10.52□□□□□ -0.73
NUP54-206ENST00000508465 ZBED2Q9BTP6 218 aa10.52□□□□□ -0.73
NUP54-206ENST00000508465 MFSD10Q14728 455 aa10.5□□□□□ -0.73
NUP54-206ENST00000508465 NBPF3Q9H094 633 aa10.5□□□□□ -0.73
NUP54-206ENST00000508465 WNT2BQ93097 391 aa10.49□□□□□ -0.73
NUP54-206ENST00000508465 ADAM33Q9BZ11 813 aa10.49□□□□□ -0.73
NUP54-206ENST00000508465 THSD4Q6ZMP0 1018 aa10.48□□□□□ -0.73
NUP54-206ENST00000508465 PPP1R3GB7ZBB8 358 aa10.43□□□□□ -0.74
NUP54-206ENST00000508465 IFFO2Q5TF58 517 aa10.43□□□□□ -0.74
NUP54-206ENST00000508465 FBXW7Q969H0 707 aa10.43□□□□□ -0.74
NUP54-206ENST00000508465 EMILIN3Q9NT22 766 aa10.43□□□□□ -0.74
NUP54-206ENST00000508465 PCDHGA10Q9Y5H3 936 aa10.42□□□□□ -0.74
NUP54-206ENST00000508465 RGS20O76081 388 aa10.41□□□□□ -0.74
NUP54-206ENST00000508465 PHF14O94880 888 aa10.41□□□□□ -0.74
NUP54-206ENST00000508465 TYW1BQ6NUM6 668 aa10.41□□□□□ -0.74
NUP54-206ENST00000508465 RABGEF1Q9UJ41 708 aa10.41□□□□□ -0.74
NUP54-206ENST00000508465 ANKK1Q8NFD2 765 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms