RNA–Protein interactions for RNA: ENST00000507449.1

LSM6-205, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM6, Length 371 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-205ENST00000507449 IFNL1Q8IU54 200 aa8.38□□□□□ -1.07
LSM6-205ENST00000507449 L3MBTL3Q96JM7 780 aaPredicted RBP8.36□□□□□ -1.07
LSM6-205ENST00000507449 PSEN1P49768 467 aa8.35□□□□□ -1.07
LSM6-205ENST00000507449 MYT1LQ9UL68 1186 aa8.34□□□□□ -1.07
LSM6-205ENST00000507449 PTGER2P43116 358 aa8.32□□□□□ -1.08
LSM6-205ENST00000507449 MFRPQ9BY79 579 aa8.29□□□□□ -1.08
LSM6-205ENST00000507449 GOLGA2Q08379 1002 aa8.28□□□□□ -1.08
LSM6-205ENST00000507449 POTEB3A0JP26 581 aa8.27□□□□□ -1.09
LSM6-205ENST00000507449 POTEBQ6S5H4 581 aa8.27□□□□□ -1.09
LSM6-205ENST00000507449 ZNF710Q8N1W2 664 aa8.27□□□□□ -1.09
LSM6-205ENST00000507449 ERBB3P21860 1342 aa8.27□□□□□ -1.09
LSM6-205ENST00000507449 RYDENQ9NUL5 291 aaKnown RBP8.26□□□□□ -1.09
LSM6-205ENST00000507449 EFCAB3Q8N7B9 438 aa8.25□□□□□ -1.09
LSM6-205ENST00000507449 BCANQ96GW7 911 aa8.25□□□□□ -1.09
LSM6-205ENST00000507449 FBXO22Q8NEZ5 403 aa8.24□□□□□ -1.09
LSM6-205ENST00000507449 CABP2Q9NPB3 220 aa8.24□□□□□ -1.09
LSM6-205ENST00000507449 G3V3G9 751 aa8.23□□□□□ -1.09
LSM6-205ENST00000507449 RIMBP2O15034 1052 aa8.22□□□□□ -1.09
LSM6-205ENST00000507449 MKRN3Q13064 507 aaKnown RBP8.22□□□□□ -1.09
LSM6-205ENST00000507449 CADPS2Q86UW7 1296 aa8.22□□□□□ -1.09
LSM6-205ENST00000507449 PPP1R37O75864 691 aa8.21□□□□□ -1.1
LSM6-205ENST00000507449 PHF8Q9UPP1 1060 aa8.21□□□□□ -1.1
LSM6-205ENST00000507449 HOXB1P14653 301 aaPredicted RBP8.19□□□□□ -1.1
LSM6-205ENST00000507449 DOK7Q18PE1 504 aa8.19□□□□□ -1.1
LSM6-205ENST00000507449 SOX12O15370 315 aa8.18□□□□□ -1.1
LSM6-205ENST00000507449 MS4A4AQ96JQ5 239 aa8.18□□□□□ -1.1
LSM6-205ENST00000507449 NLRP6P59044 892 aa8.17□□□□□ -1.1
LSM6-205ENST00000507449 PDCD7Q8N8D1 485 aaKnown RBP8.13□□□□□ -1.11
LSM6-205ENST00000507449 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.13□□□□□ -1.117e-7■■■□□ 14.8
LSM6-205ENST00000507449 VARS2Q5ST30 1063 aaKnown RBP8.12□□□□□ -1.11
LSM6-205ENST00000507449 ILDR1Q86SU0 546 aaPredicted RBP8.11□□□□□ -1.11
LSM6-205ENST00000507449 PRKCSHP14314 528 aaPredicted RBP8.1□□□□□ -1.11
LSM6-205ENST00000507449 PLA2G2EQ9NZK7 142 aa8.1□□□□□ -1.11
LSM6-205ENST00000507449 ZNF687Q8N1G0 1237 aa8.09□□□□□ -1.11
LSM6-205ENST00000507449 HOXB3P14651 431 aaPredicted RBP8.06□□□□□ -1.12
LSM6-205ENST00000507449 KCNV2Q8TDN2 545 aa8.06□□□□□ -1.12
LSM6-205ENST00000507449 NCKAP5LQ9HCH0 1330 aa8.05□□□□□ -1.12
LSM6-205ENST00000507449 NBR1Q14596 966 aa8.05□□□□□ -1.12
LSM6-205ENST00000507449 ZSWIM6Q9HCJ5 1215 aa8.05□□□□□ -1.12
LSM6-205ENST00000507449 ANKRD13DQ6ZTN6 518 aa8.04□□□□□ -1.12
LSM6-205ENST00000507449 HCSTQ9UBK5 93 aa8.04□□□□□ -1.12
LSM6-205ENST00000507449 TPRNQ4KMQ1 711 aa8.02□□□□□ -1.13
LSM6-205ENST00000507449 DPY19L2Q6NUT2 758 aa8.02□□□□□ -1.13
LSM6-205ENST00000507449 WDR70Q9NW82 654 aa8.02□□□□□ -1.13
LSM6-205ENST00000507449 BOLA1Q9Y3E2 137 aa8.02□□□□□ -1.13
LSM6-205ENST00000507449 P3H3Q8IVL6 736 aa8.01□□□□□ -1.13
LSM6-205ENST00000507449 CRISPLD2Q9H0B8 497 aa8.01□□□□□ -1.13
LSM6-205ENST00000507449 MFSD10Q14728 455 aa8□□□□□ -1.13
LSM6-205ENST00000507449 LARP6Q9BRS8 491 aaKnown RBP7.98□□□□□ -1.13
LSM6-205ENST00000507449 PDE4AP27815 886 aa7.96□□□□□ -1.14
LSM6-205ENST00000507449 E2F4Q16254 413 aa7.96□□□□□ -1.14
LSM6-205ENST00000507449 MICALL2Q8IY33 904 aa7.95□□□□□ -1.14
LSM6-205ENST00000507449 RGS20O76081 388 aa7.94□□□□□ -1.14
LSM6-205ENST00000507449 LSM11P83369 360 aaKnown RBP eCLIP7.94□□□□□ -1.14
LSM6-205ENST00000507449 ARHGEF1Q92888 912 aaKnown RBP7.93□□□□□ -1.14
LSM6-205ENST00000507449 DDX27Q96GQ7 796 aaKnown RBP7.93□□□□□ -1.14
LSM6-205ENST00000507449 IRX2Q9BZI1 471 aaPredicted RBP7.93□□□□□ -1.14
LSM6-205ENST00000507449 CAMK2BQ13554 666 aa7.92□□□□□ -1.14
LSM6-205ENST00000507449 GPHNQ9NQX3 736 aaPredicted RBP7.92□□□□□ -1.14
LSM6-205ENST00000507449 PBX2P40425 430 aa7.9□□□□□ -1.14
LSM6-205ENST00000507449 SEMA3EO15041 775 aa7.88□□□□□ -1.15
LSM6-205ENST00000507449 DSG2Q14126 1118 aa7.88□□□□□ -1.15
LSM6-205ENST00000507449 PPP1R15BQ5SWA1 713 aa7.88□□□□□ -1.15
LSM6-205ENST00000507449 ARIH1Q9Y4X5 557 aaPredicted RBP7.88□□□□□ -1.15
LSM6-205ENST00000507449 KIF3CO14782 793 aa7.87□□□□□ -1.15
LSM6-205ENST00000507449 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.87□□□□□ -1.15
LSM6-205ENST00000507449 TMEM92Q6UXU6 159 aa7.86□□□□□ -1.15
LSM6-205ENST00000507449 TESPA1A2RU30 521 aaPredicted RBP7.85□□□□□ -1.15
LSM6-205ENST00000507449 C2orf72A6NCS6 295 aa7.85□□□□□ -1.15
LSM6-205ENST00000507449 GPR153Q6NV75 609 aa7.85□□□□□ -1.15
LSM6-205ENST00000507449 EMILIN3Q9NT22 766 aa7.85□□□□□ -1.15
LSM6-205ENST00000507449 ZNF316A6NFI3 1004 aaPredicted RBP7.84□□□□□ -1.15
LSM6-205ENST00000507449 FOXK1P85037 733 aa7.84□□□□□ -1.15
LSM6-205ENST00000507449 LMOD2Q6P5Q4 547 aa7.84□□□□□ -1.15
LSM6-205ENST00000507449 TMC2Q8TDI7 906 aa7.83□□□□□ -1.16
LSM6-205ENST00000507449 PLPP6Q8IY26 295 aa7.81□□□□□ -1.16
LSM6-205ENST00000507449 DPYSL4O14531 572 aa7.8□□□□□ -1.16
LSM6-205ENST00000507449 MLLT3P42568 568 aaPredicted RBP7.78□□□□□ -1.16
LSM6-205ENST00000507449 ARSIQ5FYB1 569 aa7.78□□□□□ -1.16
LSM6-205ENST00000507449 STAC3Q96MF2 364 aa7.78□□□□□ -1.16
LSM6-205ENST00000507449 PDIA6Q15084 440 aa7.76□□□□□ -1.17
LSM6-205ENST00000507449 ZC3H15Q8WU90 426 aaKnown RBP7.74□□□□□ -1.17
LSM6-205ENST00000507449 TULP1O00294 542 aaPredicted RBP7.73□□□□□ -1.17
LSM6-205ENST00000507449 SPDYE16A6NNV3 312 aaPredicted RBP7.72□□□□□ -1.17
LSM6-205ENST00000507449 OXER1Q8TDS5 423 aa7.72□□□□□ -1.17
LSM6-205ENST00000507449 RBM26Q5T8P6 1007 aaKnown RBP7.71□□□□□ -1.18
LSM6-205ENST00000507449 IFFO2Q5TF58 517 aa7.71□□□□□ -1.18
LSM6-205ENST00000507449 ADGRD1Q6QNK2 874 aa7.71□□□□□ -1.18
LSM6-205ENST00000507449 Q6ZNB5 142 aa7.71□□□□□ -1.18
LSM6-205ENST00000507449 UPF1Q92900 1129 aaKnown RBP eCLIP7.71□□□□□ -1.18
LSM6-205ENST00000507449 SMYD5Q6GMV2 418 aa7.7□□□□□ -1.18
LSM6-205ENST00000507449 PSDA5PKW4 1024 aaPredicted RBP7.68□□□□□ -1.18
LSM6-205ENST00000507449 TK2O00142 265 aa7.68□□□□□ -1.18
LSM6-205ENST00000507449 MAP3K9P80192 1104 aa7.68□□□□□ -1.18
LSM6-205ENST00000507449 ARHGAP33O14559 1287 aa7.67□□□□□ -1.18
LSM6-205ENST00000507449 ZMYND10O75800 440 aa7.67□□□□□ -1.18
LSM6-205ENST00000507449 PTCD2Q8WV60 388 aaKnown RBP7.66□□□□□ -1.18
LSM6-205ENST00000507449 KCTD12Q96CX2 325 aaKnown RBP7.66□□□□□ -1.18
LSM6-205ENST00000507449 AXIN2Q9Y2T1 843 aa7.65□□□□□ -1.18
LSM6-205ENST00000507449 GPR37O15354 613 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms