RNA–Protein interactions for RNA: ENST00000506244.5

SNCA-209, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 570 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-209ENST00000506244 FRMPD1Q5SYB0 1578 aa26.37■■□□□ 1.81
SNCA-209ENST00000506244 CDC42BPBQ9Y5S2 1711 aa26.37■■□□□ 1.81
SNCA-209ENST00000506244 CDC42BPAQ5VT25 1732 aa26.36■■□□□ 1.81
SNCA-209ENST00000506244 RICTORQ6R327 1708 aa26.35■■□□□ 1.81
SNCA-209ENST00000506244 SUPT6HQ7KZ85 1726 aaKnown RBP26.33■■□□□ 1.81
SNCA-209ENST00000506244 CCNB3Q8WWL7 1395 aa26.33■■□□□ 1.8
SNCA-209ENST00000506244 ITSN2Q9NZM3 1697 aa26.31■■□□□ 1.8
SNCA-209ENST00000506244 POGZQ7Z3K3 1410 aa26.31■■□□□ 1.8
SNCA-209ENST00000506244 SCAPERQ9BY12 1400 aa26.31■■□□□ 1.8
SNCA-209ENST00000506244 ZMYM4Q5VZL5 1548 aa26.31■■□□□ 1.8
SNCA-209ENST00000506244 RAPGEF3O95398 923 aa26.31■■□□□ 1.8
SNCA-209ENST00000506244 GPATCH8Q9UKJ3 1502 aaKnown RBP26.3■■□□□ 1.8
SNCA-209ENST00000506244 LRRC9Q6ZRR7 1453 aa26.3■■□□□ 1.8
SNCA-209ENST00000506244 ABCC1P33527 1531 aa26.28■■□□□ 1.8
SNCA-209ENST00000506244 APLP2Q06481 763 aa26.27■■□□□ 1.8
SNCA-209ENST00000506244 ZNF518AQ6AHZ1 1483 aa26.27■■□□□ 1.8
SNCA-209ENST00000506244 ARHGEF40Q8TER5 1519 aa26.26■■□□□ 1.79
SNCA-209ENST00000506244 NCOA2Q15596 1464 aa26.25■■□□□ 1.79
SNCA-209ENST00000506244 MAGI2Q86UL8 1455 aa26.24■■□□□ 1.79
SNCA-209ENST00000506244 PLEKHH2Q8IVE3 1493 aa26.23■■□□□ 1.79
SNCA-209ENST00000506244 SAMD9LQ8IVG5 1584 aa26.21■■□□□ 1.79
SNCA-209ENST00000506244 ZFYVE16Q7Z3T8 1539 aa26.21■■□□□ 1.79
SNCA-209ENST00000506244 CFDP1Q9UEE9 299 aaPredicted RBP26.21■■□□□ 1.79
SNCA-209ENST00000506244 KDM5CP41229 1560 aa26.2■■□□□ 1.79
SNCA-209ENST00000506244 SYCP2Q9BX26 1530 aa26.16■■□□□ 1.78
SNCA-209ENST00000506244 ZNF777Q9ULD5 760 aaPredicted RBP26.16■■□□□ 1.78
SNCA-209ENST00000506244 HECW2Q9P2P5 1572 aa26.16■■□□□ 1.78
SNCA-209ENST00000506244 KIAA1107Q9UPP5 1409 aa26.15■■□□□ 1.78
SNCA-209ENST00000506244 ARHGEF12Q9NZN5 1544 aa26.13■■□□□ 1.77
SNCA-209ENST00000506244 KANK4Q5T7N3 995 aaPredicted RBP26.12■■□□□ 1.77
SNCA-209ENST00000506244 TRAPPC8Q9Y2L5 1435 aa26.11■■□□□ 1.77
SNCA-209ENST00000506244 YEATS2Q9ULM3 1422 aa26.1■■□□□ 1.77
SNCA-209ENST00000506244 MLH3Q9UHC1 1453 aa26.1■■□□□ 1.77
SNCA-209ENST00000506244 AEBP2Q6ZN18 517 aaPredicted RBP26.09■■□□□ 1.77
SNCA-209ENST00000506244 AFAP1Q8N556 730 aa26.08■■□□□ 1.77
SNCA-209ENST00000506244 MYOM3Q5VTT5 1437 aa26.06■■□□□ 1.76
SNCA-209ENST00000506244 CAMSAP2Q08AD1 1489 aa26.06■■□□□ 1.76
SNCA-209ENST00000506244 C9orf84Q5VXU9 1444 aa26.05■■□□□ 1.76
SNCA-209ENST00000506244 ATP10AO60312 1499 aa26.04■■□□□ 1.76
SNCA-209ENST00000506244 KDM4FA0A1W2PPD8 638 aa26.04■■□□□ 1.76
SNCA-209ENST00000506244 MYT1LQ9UL68 1186 aa26.04■■□□□ 1.76
SNCA-209ENST00000506244 MIA2Q96PC5 1412 aa26.04■■□□□ 1.76
SNCA-209ENST00000506244 DIP2CQ9Y2E4 1556 aa26.03■■□□□ 1.76
SNCA-209ENST00000506244 ARID4BQ4LE39 1312 aaPredicted RBP26.02■■□□□ 1.76
SNCA-209ENST00000506244 HNRNPMP52272 730 aaKnown RBP eCLIP26.01■■□□□ 1.75
SNCA-209ENST00000506244 ABCA6Q8N139 1617 aa26.01■■□□□ 1.75
SNCA-209ENST00000506244 REREQ9P2R6 1566 aa26.01■■□□□ 1.75
SNCA-209ENST00000506244 KIDINS220Q9ULH0 1771 aa26■■□□□ 1.75
SNCA-209ENST00000506244 BCORL1Q5H9F3 1711 aa26■■□□□ 1.75
SNCA-209ENST00000506244 INO80Q9ULG1 1556 aaPredicted RBP25.99■■□□□ 1.75
SNCA-209ENST00000506244 ATP7AQ04656 1500 aa25.99■■□□□ 1.75
SNCA-209ENST00000506244 MBD5Q9P267 1494 aa25.99■■□□□ 1.75
SNCA-209ENST00000506244 SPAG9O60271 1321 aaKnown RBP25.99■■□□□ 1.75
SNCA-209ENST00000506244 ZNF644Q9H582 1327 aaPredicted RBP25.99■■□□□ 1.75
SNCA-209ENST00000506244 CCDC141Q6ZP82 1450 aa25.98■■□□□ 1.75
SNCA-209ENST00000506244 ARHGEF5Q12774 1597 aa25.97■■□□□ 1.75
SNCA-209ENST00000506244 RSPH4AQ5TD94 716 aa25.95■■□□□ 1.74
SNCA-209ENST00000506244 ADAMTSL3P82987 1691 aa25.94■■□□□ 1.74
SNCA-209ENST00000506244 SIGLEC1Q9BZZ2 1709 aa25.93■■□□□ 1.74
SNCA-209ENST00000506244 RTEL1-TNFRSF6BF6WH68 1400 aa25.91■■□□□ 1.74
SNCA-209ENST00000506244 FGD6Q6ZV73 1430 aa25.9■■□□□ 1.74
SNCA-209ENST00000506244 AGLP35573 1532 aa25.89■■□□□ 1.74
SNCA-209ENST00000506244 PTPN23Q9H3S7 1636 aa25.89■■□□□ 1.74
SNCA-209ENST00000506244 MADDQ8WXG6 1647 aa25.88■■□□□ 1.73
SNCA-209ENST00000506244 ADGBQ8N7X0 1667 aa25.87■■□□□ 1.73
SNCA-209ENST00000506244 TCOF1Q13428 1488 aaKnown RBP25.85■■□□□ 1.73
SNCA-209ENST00000506244 PLXNC1O60486 1568 aa25.84■■□□□ 1.73
SNCA-209ENST00000506244 MAST1Q9Y2H9 1570 aa25.83■■□□□ 1.73
SNCA-209ENST00000506244 A2MP01023 1474 aa25.83■■□□□ 1.73
SNCA-209ENST00000506244 FER1L4A9Z1Z3 1794 aa25.82■■□□□ 1.72
SNCA-209ENST00000506244 TSPY4P0CV99 314 aa25.82■■□□□ 1.72
SNCA-209ENST00000506244 TSPY10P0CW01 314 aa25.82■■□□□ 1.72
SNCA-209ENST00000506244 RIMS1Q86UR5 1692 aaKnown RBP25.81■■□□□ 1.72
SNCA-209ENST00000506244 PTPRMP28827 1452 aa25.8■■□□□ 1.72
SNCA-209ENST00000506244 SHANK2Q9UPX8 1470 aa25.79■■□□□ 1.72
SNCA-209ENST00000506244 MLECQ14165 292 aa25.79■■□□□ 1.72
SNCA-209ENST00000506244 CROCC2H7BZ55 1655 aa25.79■■□□□ 1.72
SNCA-209ENST00000506244 DNMT1P26358 1616 aaKnown RBP25.77■■□□□ 1.72
SNCA-209ENST00000506244 DAPK1P53355 1430 aa25.73■■□□□ 1.71
SNCA-209ENST00000506244 DHX29Q7Z478 1369 aaKnown RBP25.72■■□□□ 1.71
SNCA-209ENST00000506244 ABCC5O15440 1437 aa25.71■■□□□ 1.71
SNCA-209ENST00000506244 ESF1Q9H501 851 aaKnown RBP25.69■■□□□ 1.7
SNCA-209ENST00000506244 CNTLNQ9NXG0 1405 aa25.69■■□□□ 1.7
SNCA-209ENST00000506244 FAM50AQ14320 339 aaKnown RBP25.67■■□□□ 1.7
SNCA-209ENST00000506244 DUOX2Q9NRD8 1548 aa25.64■■□□□ 1.7
SNCA-209ENST00000506244 EIF2AK4Q9P2K8 1649 aaKnown RBP25.64■■□□□ 1.7
SNCA-209ENST00000506244 FAM135AQ9P2D6 1515 aa25.63■■□□□ 1.69
SNCA-209ENST00000506244 MROH2AA6NES4 1674 aa25.63■■□□□ 1.69
SNCA-209ENST00000506244 PPARGC1BQ86YN6 1023 aaKnown RBP25.62■■□□□ 1.69
SNCA-209ENST00000506244 KIF15Q9NS87 1388 aa25.61■■□□□ 1.69
SNCA-209ENST00000506244 PPP6R1Q9UPN7 881 aa25.61■■□□□ 1.69
SNCA-209ENST00000506244 ANKRD30AQ9BXX3 1397 aa25.6■■□□□ 1.69
SNCA-209ENST00000506244 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.59■■□□□ 1.69
SNCA-209ENST00000506244 ADGRL2O95490 1459 aa25.59■■□□□ 1.69
SNCA-209ENST00000506244 ERBINQ96RT1 1412 aa25.58■■□□□ 1.69
SNCA-209ENST00000506244 GGT6Q6P531 493 aa25.58■■□□□ 1.69
SNCA-209ENST00000506244 RNF17Q9BXT8 1623 aaKnown RBP25.58■■□□□ 1.69
SNCA-209ENST00000506244 KIF3BO15066 747 aa25.57■■□□□ 1.68
SNCA-209ENST00000506244 C3P01024 1663 aa25.56■■□□□ 1.68
SNCA-209ENST00000506244 CLTCQ00610 1675 aaKnown RBP25.56■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms