RNA–Protein interactions for RNA: ENST00000505005.5

NR1I3-220, Transcript of nuclear receptor subfamily 1 group I member 3, humanhuman

TSL 1 (best) BASIC

Gene NR1I3, Length 985 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1I3-220ENST00000505005 TTC37Q6PGP7 1564 aa15.4■□□□□ 0.06
NR1I3-220ENST00000505005 RSPH4AQ5TD94 716 aa15.39■□□□□ 0.05
NR1I3-220ENST00000505005 MAGI2Q86UL8 1455 aa15.39■□□□□ 0.05
NR1I3-220ENST00000505005 PLEKHH2Q8IVE3 1493 aa15.39■□□□□ 0.05
NR1I3-220ENST00000505005 ARHGAP5Q13017 1502 aa15.38■□□□□ 0.05
NR1I3-220ENST00000505005 CFDP1Q9UEE9 299 aaPredicted RBP15.37■□□□□ 0.05
NR1I3-220ENST00000505005 ADGRL1O94910 1474 aa15.37■□□□□ 0.05
NR1I3-220ENST00000505005 TIAM1Q13009 1591 aa15.36■□□□□ 0.05
NR1I3-220ENST00000505005 SUPT6HQ7KZ85 1726 aaKnown RBP15.36■□□□□ 0.05
NR1I3-220ENST00000505005 SCAPERQ9BY12 1400 aa15.35■□□□□ 0.05
NR1I3-220ENST00000505005 PREX2Q70Z35 1606 aa15.35■□□□□ 0.05
NR1I3-220ENST00000505005 ZNF518AQ6AHZ1 1483 aa15.34■□□□□ 0.05
NR1I3-220ENST00000505005 COL17A1Q9UMD9 1497 aaPredicted RBP15.34■□□□□ 0.05
NR1I3-220ENST00000505005 ITSN2Q9NZM3 1697 aa15.34■□□□□ 0.05
NR1I3-220ENST00000505005 KIAA1107Q9UPP5 1409 aa15.33■□□□□ 0.04
NR1I3-220ENST00000505005 LRRC9Q6ZRR7 1453 aa15.33■□□□□ 0.04
NR1I3-220ENST00000505005 RAPGEF3O95398 923 aa15.32■□□□□ 0.04
NR1I3-220ENST00000505005 GPATCH8Q9UKJ3 1502 aaKnown RBP15.32■□□□□ 0.04
NR1I3-220ENST00000505005 CDC42BPBQ9Y5S2 1711 aa15.31■□□□□ 0.04
NR1I3-220ENST00000505005 CDC42BPAQ5VT25 1732 aa15.3■□□□□ 0.04
NR1I3-220ENST00000505005 ZMYM4Q5VZL5 1548 aa15.29■□□□□ 0.04
NR1I3-220ENST00000505005 POGZQ7Z3K3 1410 aa15.29■□□□□ 0.04
NR1I3-220ENST00000505005 MYT1LQ9UL68 1186 aa15.29■□□□□ 0.04
NR1I3-220ENST00000505005 ZNF777Q9ULD5 760 aaPredicted RBP15.29■□□□□ 0.04
NR1I3-220ENST00000505005 NCOA2Q15596 1464 aa15.28■□□□□ 0.04
NR1I3-220ENST00000505005 RICTORQ6R327 1708 aa15.28■□□□□ 0.04
NR1I3-220ENST00000505005 MIA2Q96PC5 1412 aa15.27■□□□□ 0.04
NR1I3-220ENST00000505005 MLH3Q9UHC1 1453 aa15.25■□□□□ 0.03
NR1I3-220ENST00000505005 ABCC1P33527 1531 aa15.24■□□□□ 0.03
NR1I3-220ENST00000505005 TSPY4P0CV99 314 aa15.24■□□□□ 0.03
NR1I3-220ENST00000505005 TSPY10P0CW01 314 aa15.24■□□□□ 0.03
NR1I3-220ENST00000505005 ZFYVE16Q7Z3T8 1539 aa15.23■□□□□ 0.03
NR1I3-220ENST00000505005 ARID4BQ4LE39 1312 aaPredicted RBP15.22■□□□□ 0.03
NR1I3-220ENST00000505005 ATP10AO60312 1499 aa15.22■□□□□ 0.03
NR1I3-220ENST00000505005 KDM5CP41229 1560 aa15.22■□□□□ 0.03
NR1I3-220ENST00000505005 SPAG9O60271 1321 aaKnown RBP15.21■□□□□ 0.03
NR1I3-220ENST00000505005 AFAP1Q8N556 730 aa15.21■□□□□ 0.03
NR1I3-220ENST00000505005 ARHGEF40Q8TER5 1519 aa15.21■□□□□ 0.03
NR1I3-220ENST00000505005 FRMPD1Q5SYB0 1578 aa15.2■□□□□ 0.02
NR1I3-220ENST00000505005 MYOM3Q5VTT5 1437 aa15.2■□□□□ 0.02
NR1I3-220ENST00000505005 KANK4Q5T7N3 995 aaPredicted RBP15.2■□□□□ 0.02
NR1I3-220ENST00000505005 HECW2Q9P2P5 1572 aa15.19■□□□□ 0.02
NR1I3-220ENST00000505005 RTEL1-TNFRSF6BF6WH68 1400 aa15.19■□□□□ 0.02
NR1I3-220ENST00000505005 C9orf84Q5VXU9 1444 aa15.19■□□□□ 0.02
NR1I3-220ENST00000505005 SAMD9LQ8IVG5 1584 aa15.19■□□□□ 0.02
NR1I3-220ENST00000505005 HNRNPMP52272 730 aaKnown RBP eCLIP15.18■□□□□ 0.02
NR1I3-220ENST00000505005 REREQ9P2R6 1566 aa15.16■□□□□ 0.02
NR1I3-220ENST00000505005 PPP6R1Q9UPN7 881 aa15.16■□□□□ 0.02
NR1I3-220ENST00000505005 SYCP2Q9BX26 1530 aa15.16■□□□□ 0.02
NR1I3-220ENST00000505005 TRAPPC8Q9Y2L5 1435 aa15.16■□□□□ 0.02
NR1I3-220ENST00000505005 CCDC141Q6ZP82 1450 aa15.15■□□□□ 0.02
NR1I3-220ENST00000505005 ESF1Q9H501 851 aaKnown RBP15.15■□□□□ 0.02
NR1I3-220ENST00000505005 ARHGEF5Q12774 1597 aa15.15■□□□□ 0.02
NR1I3-220ENST00000505005 CAMSAP2Q08AD1 1489 aa15.14■□□□□ 0.01
NR1I3-220ENST00000505005 MBD5Q9P267 1494 aa15.13■□□□□ 0.01
NR1I3-220ENST00000505005 ARHGEF12Q9NZN5 1544 aa15.12■□□□□ 0.01
NR1I3-220ENST00000505005 KDM4FA0A1W2PPD8 638 aa15.12■□□□□ 0.01
NR1I3-220ENST00000505005 AGLP35573 1532 aa15.12■□□□□ 0.01
NR1I3-220ENST00000505005 YEATS2Q9ULM3 1422 aa15.11■□□□□ 0.01
NR1I3-220ENST00000505005 ATP7AQ04656 1500 aa15.11■□□□□ 0.01
NR1I3-220ENST00000505005 FOXD1Q16676 465 aa15.1■□□□□ 0.01
NR1I3-220ENST00000505005 ZNF644Q9H582 1327 aaPredicted RBP15.1■□□□□ 0.01
NR1I3-220ENST00000505005 FGD6Q6ZV73 1430 aa15.09■□□□□ 0.01
NR1I3-220ENST00000505005 ADGBQ8N7X0 1667 aa15.09■□□□□ 0.01
NR1I3-220ENST00000505005 BCORL1Q5H9F3 1711 aa15.09■□□□□ 0.01
NR1I3-220ENST00000505005 KIDINS220Q9ULH0 1771 aa15.08■□□□□ 0.01
NR1I3-220ENST00000505005 DIP2CQ9Y2E4 1556 aa15.07■□□□□ 0
NR1I3-220ENST00000505005 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.07■□□□□ 0
NR1I3-220ENST00000505005 CNTLNQ9NXG0 1405 aa15.07■□□□□ 0
NR1I3-220ENST00000505005 A2MP01023 1474 aa15.07■□□□□ 0
NR1I3-220ENST00000505005 TCOF1Q13428 1488 aaKnown RBP15.07■□□□□ 0
NR1I3-220ENST00000505005 INO80Q9ULG1 1556 aaPredicted RBP15.07■□□□□ 0
NR1I3-220ENST00000505005 PTPN23Q9H3S7 1636 aa15.06■□□□□ 0
NR1I3-220ENST00000505005 DHX29Q7Z478 1369 aaKnown RBP15.06■□□□□ 0
NR1I3-220ENST00000505005 ADAMTSL3P82987 1691 aa15.06■□□□□ 0
NR1I3-220ENST00000505005 SHANK2Q9UPX8 1470 aa15.05■□□□□ -0
NR1I3-220ENST00000505005 MAST1Q9Y2H9 1570 aa15.05■□□□□ -0
NR1I3-220ENST00000505005 ABCA6Q8N139 1617 aa15.04■□□□□ -0
NR1I3-220ENST00000505005 FAM135AQ9P2D6 1515 aa15.02■□□□□ -0
NR1I3-220ENST00000505005 ANKRD30AQ9BXX3 1397 aa15.02■□□□□ -0
NR1I3-220ENST00000505005 MLECQ14165 292 aa15.01□□□□□ -0.01
NR1I3-220ENST00000505005 FAM50AQ14320 339 aaKnown RBP15.01□□□□□ -0.01
NR1I3-220ENST00000505005 PTPRMP28827 1452 aa15□□□□□ -0.01
NR1I3-220ENST00000505005 DNMT1P26358 1616 aaKnown RBP14.99□□□□□ -0.01
NR1I3-220ENST00000505005 DAPK1P53355 1430 aa14.99□□□□□ -0.01
NR1I3-220ENST00000505005 PLXNC1O60486 1568 aa14.98□□□□□ -0.01
NR1I3-220ENST00000505005 SETD1BQ9UPS6 1966 aaKnown RBP14.98□□□□□ -0.01
NR1I3-220ENST00000505005 DUOX2Q9NRD8 1548 aa14.98□□□□□ -0.01
NR1I3-220ENST00000505005 FER1L4A9Z1Z3 1794 aa14.98□□□□□ -0.01
NR1I3-220ENST00000505005 ACIN1Q9UKV3 1341 aaKnown RBP14.97□□□□□ -0.01
NR1I3-220ENST00000505005 KIF3BO15066 747 aa14.97□□□□□ -0.01
NR1I3-220ENST00000505005 ABCC5O15440 1437 aa14.97□□□□□ -0.01
NR1I3-220ENST00000505005 MADDQ8WXG6 1647 aa14.96□□□□□ -0.01
NR1I3-220ENST00000505005 GGT6Q6P531 493 aa14.96□□□□□ -0.01
NR1I3-220ENST00000505005 EIF2AK4Q9P2K8 1649 aaKnown RBP14.95□□□□□ -0.02
NR1I3-220ENST00000505005 ERBINQ96RT1 1412 aa14.95□□□□□ -0.02
NR1I3-220ENST00000505005 CROCC2H7BZ55 1655 aa14.94□□□□□ -0.02
NR1I3-220ENST00000505005 KIF15Q9NS87 1388 aa14.94□□□□□ -0.02
NR1I3-220ENST00000505005 RIMS1Q86UR5 1692 aaKnown RBP14.93□□□□□ -0.02
NR1I3-220ENST00000505005 ROCK1Q13464 1354 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms