RNA–Protein interactions for RNA: ENST00000504849.5

RFC1-208, Transcript of replication factor C subunit 1, humanhuman

TSL 3

Gene RFC1, Length 873 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-208ENST00000504849 POTEEQ6S8J3 1075 aa11.51□□□□□ -0.57
RFC1-208ENST00000504849 MS4A4AQ96JQ5 239 aa11.48□□□□□ -0.57
RFC1-208ENST00000504849 HCSTQ9UBK5 93 aa11.45□□□□□ -0.58
RFC1-208ENST00000504849 PBX2P40425 430 aa11.41□□□□□ -0.58
RFC1-208ENST00000504849 AXIN2Q9Y2T1 843 aa11.4□□□□□ -0.58
RFC1-208ENST00000504849 CIZ1Q9ULV3 898 aaPredicted RBP11.39□□□□□ -0.59
RFC1-208ENST00000504849 SOX12O15370 315 aa11.34□□□□□ -0.59
RFC1-208ENST00000504849 NUDT7P0C024 238 aa11.34□□□□□ -0.59
RFC1-208ENST00000504849 SPOCK2Q92563 424 aa11.34□□□□□ -0.59
RFC1-208ENST00000504849 PHF8Q9UPP1 1060 aa11.34□□□□□ -0.59
RFC1-208ENST00000504849 LHX6Q9UPM6 363 aa11.33□□□□□ -0.6
RFC1-208ENST00000504849 IFNLR1Q8IU57 520 aaPredicted RBP11.32□□□□□ -0.6
RFC1-208ENST00000504849 ADGRD1Q6QNK2 874 aa11.31□□□□□ -0.6
RFC1-208ENST00000504849 KIF3CO14782 793 aa11.28□□□□□ -0.6
RFC1-208ENST00000504849 HRO43593 1189 aa11.26□□□□□ -0.61
RFC1-208ENST00000504849 PCDHGA4Q9Y5G9 962 aa11.23□□□□□ -0.61
RFC1-208ENST00000504849 ARHGAP33O14559 1287 aa11.21□□□□□ -0.61
RFC1-208ENST00000504849 RNF25Q96BH1 459 aaPredicted RBP11.21□□□□□ -0.61
RFC1-208ENST00000504849 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.2□□□□□ -0.62
RFC1-208ENST00000504849 C2orf72A6NCS6 295 aa11.2□□□□□ -0.62
RFC1-208ENST00000504849 SLC34A2O95436 690 aa11.2□□□□□ -0.62
RFC1-208ENST00000504849 DMRTA1Q5VZB9 504 aa11.2□□□□□ -0.62
RFC1-208ENST00000504849 FBXO22Q8NEZ5 403 aa11.2□□□□□ -0.62
RFC1-208ENST00000504849 ZFP91Q96JP5 570 aaPredicted RBP11.2□□□□□ -0.62
RFC1-208ENST00000504849 TK2O00142 265 aa11.19□□□□□ -0.62
RFC1-208ENST00000504849 TRIM41Q8WV44 630 aa11.18□□□□□ -0.62
RFC1-208ENST00000504849 RGS20O76081 388 aa11.17□□□□□ -0.62
RFC1-208ENST00000504849 IRX2Q9BZI1 471 aaPredicted RBP11.17□□□□□ -0.62
RFC1-208ENST00000504849 KCTD12Q96CX2 325 aaKnown RBP11.16□□□□□ -0.62
RFC1-208ENST00000504849 KDM4FA0A1W2PPD8 638 aa11.15□□□□□ -0.62
RFC1-208ENST00000504849 PSEN2P49810 448 aa11.14□□□□□ -0.63
RFC1-208ENST00000504849 RIOK3O14730 519 aaKnown RBP11.13□□□□□ -0.63
RFC1-208ENST00000504849 IFFO2Q5TF58 517 aa11.12□□□□□ -0.63
RFC1-208ENST00000504849 NLRP6P59044 892 aa11.11□□□□□ -0.63
RFC1-208ENST00000504849 VGFO15240 615 aaPredicted RBP11.08□□□□□ -0.64
RFC1-208ENST00000504849 A0A0G2JS52 829 aa11.07□□□□□ -0.64
RFC1-208ENST00000504849 PSDA5PKW4 1024 aaPredicted RBP11.07□□□□□ -0.64
RFC1-208ENST00000504849 MFRPQ9BY79 579 aa11.06□□□□□ -0.64
RFC1-208ENST00000504849 PTPN5P54829 565 aa11.02□□□□□ -0.65
RFC1-208ENST00000504849 PTCD2Q8WV60 388 aaKnown RBP10.97□□□□□ -0.65
RFC1-208ENST00000504849 BCL11BQ9C0K0 894 aaPredicted RBP10.97□□□□□ -0.65
RFC1-208ENST00000504849 VPS9D1Q9Y2B5 631 aa10.96□□□□□ -0.65
RFC1-208ENST00000504849 TMC2Q8TDI7 906 aa10.95□□□□□ -0.66
RFC1-208ENST00000504849 PPP4R3BQ5MIZ7 849 aa10.94□□□□□ -0.66
RFC1-208ENST00000504849 THSD4Q6ZMP0 1018 aa10.94□□□□□ -0.66
RFC1-208ENST00000504849 STAC3Q96MF2 364 aa10.93□□□□□ -0.66
RFC1-208ENST00000504849 KCNK17Q96T54 332 aa10.93□□□□□ -0.66
RFC1-208ENST00000504849 BHMG1C9JSJ3 638 aaPredicted RBP10.89□□□□□ -0.67
RFC1-208ENST00000504849 LCE2BO14633 110 aa10.89□□□□□ -0.67
RFC1-208ENST00000504849 Q6ZNB5 142 aa10.88□□□□□ -0.67
RFC1-208ENST00000504849 STK24Q9Y6E0 443 aa10.88□□□□□ -0.67
RFC1-208ENST00000504849 SLC4A5Q9BY07 1137 aa10.86□□□□□ -0.67
RFC1-208ENST00000504849 PPP1R37O75864 691 aa10.82□□□□□ -0.68
RFC1-208ENST00000504849 FOXK1P85037 733 aa10.8□□□□□ -0.68
RFC1-208ENST00000504849 WNT2BQ93097 391 aa10.8□□□□□ -0.68
RFC1-208ENST00000504849 ITGBL1O95965 494 aaPredicted RBP10.79□□□□□ -0.68
RFC1-208ENST00000504849 PLPP6Q8IY26 295 aa10.79□□□□□ -0.68
RFC1-208ENST00000504849 KCNH8Q96L42 1107 aa10.79□□□□□ -0.68
RFC1-208ENST00000504849 BCL2L12Q9HB09 334 aa10.77□□□□□ -0.69
RFC1-208ENST00000504849 STK25O00506 426 aa10.76□□□□□ -0.69
RFC1-208ENST00000504849 ZBED2Q9BTP6 218 aa10.76□□□□□ -0.69
RFC1-208ENST00000504849 DSG2Q14126 1118 aa10.72□□□□□ -0.69
RFC1-208ENST00000504849 MRPL50Q8N5N7 158 aaKnown RBP10.72□□□□□ -0.69
RFC1-208ENST00000504849 TAOK2Q9UL54 1235 aa10.72□□□□□ -0.69
RFC1-208ENST00000504849 GOLGA8CPA6NN73 597 aa10.71□□□□□ -0.69
RFC1-208ENST00000504849 TBC1D12O60347 775 aa10.71□□□□□ -0.69
RFC1-208ENST00000504849 ZNF454Q8N9F8 522 aa10.71□□□□□ -0.69
RFC1-208ENST00000504849 GPHNQ9NQX3 736 aaPredicted RBP10.7□□□□□ -0.7
RFC1-208ENST00000504849 OXER1Q8TDS5 423 aa10.68□□□□□ -0.7
RFC1-208ENST00000504849 FOSBP53539 338 aa10.67□□□□□ -0.7
RFC1-208ENST00000504849 PTPREP23469 700 aa10.66□□□□□ -0.7
RFC1-208ENST00000504849 TRAF7Q6Q0C0 670 aa10.66□□□□□ -0.7
RFC1-208ENST00000504849 LAPTM4AQ15012 233 aa10.64□□□□□ -0.71
RFC1-208ENST00000504849 NBPF3Q9H094 633 aa10.62□□□□□ -0.71
RFC1-208ENST00000504849 BCAMP50895 628 aa10.59□□□□□ -0.71
RFC1-208ENST00000504849 UPF1Q92900 1129 aaKnown RBP eCLIP10.59□□□□□ -0.71
RFC1-208ENST00000504849 ADAM33Q9BZ11 813 aa10.59□□□□□ -0.71
RFC1-208ENST00000504849 GFRA3O60609 400 aa10.58□□□□□ -0.72
RFC1-208ENST00000504849 ANKK1Q8NFD2 765 aa10.56□□□□□ -0.72
RFC1-208ENST00000504849 JPH4Q96JJ6 628 aa10.56□□□□□ -0.72
RFC1-208ENST00000504849 KCNC4Q03721 635 aa10.55□□□□□ -0.72
RFC1-208ENST00000504849 ANO8Q9HCE9 1232 aaPredicted RBP10.55□□□□□ -0.72
RFC1-208ENST00000504849 SOWAHBA6NEL2 793 aa10.54□□□□□ -0.72
RFC1-208ENST00000504849 RABGEF1Q9UJ41 708 aa10.53□□□□□ -0.72
RFC1-208ENST00000504849 PROX2Q3B8N5 592 aa10.52□□□□□ -0.73
RFC1-208ENST00000504849 ZDHHC16Q969W1 377 aa10.52□□□□□ -0.73
RFC1-208ENST00000504849 WBP1LQ9NX94 342 aa10.52□□□□□ -0.73
RFC1-208ENST00000504849 NYAP1Q6ZVC0 841 aa10.51□□□□□ -0.73
RFC1-208ENST00000504849 RGL2O15211 777 aa10.5□□□□□ -0.73
RFC1-208ENST00000504849 NRG2O14511 850 aaPredicted RBP10.49□□□□□ -0.73
RFC1-208ENST00000504849 PPP1R3GB7ZBB8 358 aa10.48□□□□□ -0.73
RFC1-208ENST00000504849 ZNF775Q96BV0 537 aaPredicted RBP10.48□□□□□ -0.73
RFC1-208ENST00000504849 COL9A1P20849 921 aa10.47□□□□□ -0.73
RFC1-208ENST00000504849 ECM2O94769 699 aaPredicted RBP10.46□□□□□ -0.73
RFC1-208ENST00000504849 ZNF787Q6DD87 383 aa10.45□□□□□ -0.74
RFC1-208ENST00000504849 LAPTM4BQ86VI4 370 aa10.45□□□□□ -0.74
RFC1-208ENST00000504849 ZFRQ96KR1 1074 aaKnown RBP10.45□□□□□ -0.74
RFC1-208ENST00000504849 CRISPLD2Q9H0B8 497 aa10.45□□□□□ -0.74
RFC1-208ENST00000504849 EVI5O60447 810 aa10.44□□□□□ -0.74
RFC1-208ENST00000504849 PPP1R15BQ5SWA1 713 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms