RNA–Protein interactions for RNA: ENST00000504131.6

CLCN3-204, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 5 BASIC

Gene CLCN3, Length 5,592 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-204ENST00000504131 FOXD4L5Q5VV16 416 aaPredicted RBP8.08□□□□□ -1.12
CLCN3-204ENST00000504131 FOXD4L4Q8WXT5 416 aaPredicted RBP8.08□□□□□ -1.12
CLCN3-204ENST00000504131 KDM4AO75164 1064 aa8.07□□□□□ -1.12
CLCN3-204ENST00000504131 PUS7Q96PZ0 661 aaKnown RBP8.07□□□□□ -1.12
CLCN3-204ENST00000504131 VGLL3A8MV65 326 aa8.06□□□□□ -1.12
CLCN3-204ENST00000504131 NEFHP12036 1026 aa8.06□□□□□ -1.12
CLCN3-204ENST00000504131 ITGAEP38570 1179 aa8.06□□□□□ -1.12
CLCN3-204ENST00000504131 RB1CC1Q8TDY2 1594 aa8.05□□□□□ -1.12
CLCN3-204ENST00000504131 ZBTB12Q9Y330 459 aaPredicted RBP8.05□□□□□ -1.12
CLCN3-204ENST00000504131 ZNF771Q7L3S4 317 aaPredicted RBP8.03□□□□□ -1.12
CLCN3-204ENST00000504131 PAIP2Q9BPZ3 127 aaKnown RBP8.03□□□□□ -1.12
CLCN3-204ENST00000504131 DNAJC2Q99543 621 aaKnown RBP8.03□□□□□ -1.12
CLCN3-204ENST00000504131 GOLGA6L6A8MZA4 724 aa8.02□□□□□ -1.13
CLCN3-204ENST00000504131 L1TD1Q5T7N2 865 aaKnown RBP8.02□□□□□ -1.13
CLCN3-204ENST00000504131 CASC1Q6TDU7 716 aa8.02□□□□□ -1.13
CLCN3-204ENST00000504131 MRVI1Q9Y6F6 885 aa8.02□□□□□ -1.13
CLCN3-204ENST00000504131 NPM1P06748 294 aaKnown RBP eCLIP8.01□□□□□ -1.13
CLCN3-204ENST00000504131 ARID3CA6NKF2 412 aa8.01□□□□□ -1.13
CLCN3-204ENST00000504131 ZHX1Q9UKY1 873 aaPredicted RBP8.01□□□□□ -1.13
CLCN3-204ENST00000504131 GOLGA6L22H0YM25 854 aa8□□□□□ -1.13
CLCN3-204ENST00000504131 GOLIM4O00461 696 aa8□□□□□ -1.13
CLCN3-204ENST00000504131 MAP7D2Q96T17 732 aa8□□□□□ -1.13
CLCN3-204ENST00000504131 FAM43AQ8N2R8 423 aa8□□□□□ -1.13
CLCN3-204ENST00000504131 PHF14O94880 888 aa8□□□□□ -1.13
CLCN3-204ENST00000504131 P3H3Q8IVL6 736 aa8□□□□□ -1.13
CLCN3-204ENST00000504131 TMED8Q6PL24 325 aaPredicted RBP7.99□□□□□ -1.13
CLCN3-204ENST00000504131 LMOD3Q0VAK6 560 aa7.99□□□□□ -1.13
CLCN3-204ENST00000504131 FOXD4L6Q3SYB3 417 aaPredicted RBP7.99□□□□□ -1.13
CLCN3-204ENST00000504131 FOXD4L3Q6VB84 417 aaPredicted RBP7.99□□□□□ -1.13
CLCN3-204ENST00000504131 ARMCX6Q7L4S7 300 aa7.99□□□□□ -1.13
CLCN3-204ENST00000504131 NEUROD2Q15784 382 aa7.98□□□□□ -1.13
CLCN3-204ENST00000504131 GOLGA6L1Q8N7Z2 621 aa7.98□□□□□ -1.13
CLCN3-204ENST00000504131 TNNT1P13805 278 aa7.97□□□□□ -1.13
CLCN3-204ENST00000504131 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.97□□□□□ -1.13
CLCN3-204ENST00000504131 MPHOSPH10O00566 681 aaKnown RBP7.97□□□□□ -1.13
CLCN3-204ENST00000504131 CALD1Q05682 793 aaKnown RBP7.97□□□□□ -1.13
CLCN3-204ENST00000504131 HMGB1P1B2RPK0 211 aaPredicted RBP7.97□□□□□ -1.13
CLCN3-204ENST00000504131 NAP1L1P55209 391 aaKnown RBP7.97□□□□□ -1.13
CLCN3-204ENST00000504131 ZNF428Q96B54 188 aa7.97□□□□□ -1.13
CLCN3-204ENST00000504131 GOLGA6L3A6NEY3 463 aa7.96□□□□□ -1.13
CLCN3-204ENST00000504131 CCDC27Q2M243 656 aa7.96□□□□□ -1.14
CLCN3-204ENST00000504131 TRIM41Q8WV44 630 aa7.96□□□□□ -1.14
CLCN3-204ENST00000504131 PIK3R5Q8WYR1 880 aa7.96□□□□□ -1.14
CLCN3-204ENST00000504131 BANK1Q8NDB2 785 aa7.96□□□□□ -1.14
CLCN3-204ENST00000504131 TPM2P07951 284 aa7.95□□□□□ -1.14
CLCN3-204ENST00000504131 TMCO4Q5TGY1 634 aa7.95□□□□□ -1.14
CLCN3-204ENST00000504131 FAM13BQ9NYF5 915 aa7.95□□□□□ -1.14
CLCN3-204ENST00000504131 HSP90AB4PQ58FF6 505 aa7.95□□□□□ -1.14
CLCN3-204ENST00000504131 UPF2Q9HAU5 1272 aaKnown RBP7.95□□□□□ -1.14
CLCN3-204ENST00000504131 ISY1Q9ULR0 285 aaKnown RBP7.95□□□□□ -1.14
CLCN3-204ENST00000504131 CREBRFQ8IUR6 639 aa7.94□□□□□ -1.14
CLCN3-204ENST00000504131 RBM28Q9NW13 759 aaKnown RBP7.94□□□□□ -1.14
CLCN3-204ENST00000504131 CCDC66A2RUB6 948 aa7.93□□□□□ -1.14
CLCN3-204ENST00000504131 PLEKHD1A6NEE1 506 aa7.93□□□□□ -1.14
CLCN3-204ENST00000504131 MSNP26038 577 aaKnown RBP7.93□□□□□ -1.14
CLCN3-204ENST00000504131 FANCIQ9NVI1 1328 aa7.93□□□□□ -1.14
CLCN3-204ENST00000504131 POLD1P28340 1107 aa7.93□□□□□ -1.14
CLCN3-204ENST00000504131 FBXW7Q969H0 707 aa7.93□□□□□ -1.14
CLCN3-204ENST00000504131 PDCL3Q9H2J4 239 aa7.93□□□□□ -1.14
CLCN3-204ENST00000504131 RBM26Q5T8P6 1007 aaKnown RBP7.93□□□□□ -1.14
CLCN3-204ENST00000504131 MTERF4Q7Z6M4 381 aaKnown RBP7.93□□□□□ -1.14
CLCN3-204ENST00000504131 KDM2AQ9Y2K7 1162 aa7.93□□□□□ -1.14
CLCN3-204ENST00000504131 WDR78Q5VTH9 848 aa7.92□□□□□ -1.14
CLCN3-204ENST00000504131 CCDC97Q96F63 343 aaPredicted RBP7.92□□□□□ -1.14
CLCN3-204ENST00000504131 FAM177A1Q8N128 213 aaPredicted RBP7.92□□□□□ -1.14
CLCN3-204ENST00000504131 MTMR7Q9Y216 660 aa7.92□□□□□ -1.14
CLCN3-204ENST00000504131 APBB1O00213 710 aa7.92□□□□□ -1.14
CLCN3-204ENST00000504131 FOSBP53539 338 aa7.92□□□□□ -1.14
CLCN3-204ENST00000504131 CHAF1AQ13111 956 aaPredicted RBP7.92□□□□□ -1.14
CLCN3-204ENST00000504131 GSE1Q14687 1217 aa7.92□□□□□ -1.14
CLCN3-204ENST00000504131 DDRGK1Q96HY6 314 aa7.92□□□□□ -1.14
CLCN3-204ENST00000504131 PES1O00541 588 aaKnown RBP7.91□□□□□ -1.14
CLCN3-204ENST00000504131 HSP90AB3PQ58FF7 597 aa7.91□□□□□ -1.14
CLCN3-204ENST00000504131 GORABQ5T7V8 394 aa7.91□□□□□ -1.14
CLCN3-204ENST00000504131 SUDS3Q9H7L9 328 aaPredicted RBP7.91□□□□□ -1.14
CLCN3-204ENST00000504131 FAM43BQ6ZT52 329 aaPredicted RBP7.9□□□□□ -1.14
CLCN3-204ENST00000504131 HMGN5P82970 282 aaKnown RBP7.9□□□□□ -1.14
CLCN3-204ENST00000504131 TDO2P48775 406 aa7.9□□□□□ -1.15
CLCN3-204ENST00000504131 ERICH4A6NGS2 130 aa7.89□□□□□ -1.15
CLCN3-204ENST00000504131 TSPYL1Q9H0U9 437 aa7.89□□□□□ -1.15
CLCN3-204ENST00000504131 BICRAQ9NZM4 1560 aa7.89□□□□□ -1.15
CLCN3-204ENST00000504131 NRDCO43847 1150 aa7.88□□□□□ -1.15
CLCN3-204ENST00000504131 KIAA2012Q0VF49 1180 aa7.88□□□□□ -1.15
CLCN3-204ENST00000504131 CGNQ9P2M7 1197 aaKnown RBP7.88□□□□□ -1.15
CLCN3-204ENST00000504131 RALBP1Q15311 655 aa7.88□□□□□ -1.15
CLCN3-204ENST00000504131 STAC3Q96MF2 364 aa7.88□□□□□ -1.15
CLCN3-204ENST00000504131 MYCNP04198 464 aaPredicted RBP7.87□□□□□ -1.15
CLCN3-204ENST00000504131 ZRSR2Q15696 482 aaKnown RBP7.87□□□□□ -1.15
CLCN3-204ENST00000504131 PEG3Q9GZU2 1588 aa7.87□□□□□ -1.15
CLCN3-204ENST00000504131 MPNDQ8N594 471 aa7.87□□□□□ -1.15
CLCN3-204ENST00000504131 WDR70Q9NW82 654 aa7.87□□□□□ -1.15
CLCN3-204ENST00000504131 TERF2IPQ9NYB0 399 aa7.86□□□□□ -1.15
CLCN3-204ENST00000504131 TMCO5BA8MYB1 307 aa7.86□□□□□ -1.15
CLCN3-204ENST00000504131 PRDM16Q9HAZ2 1276 aa7.86□□□□□ -1.15
CLCN3-204ENST00000504131 GTF2E1P29083 439 aaPredicted RBP7.85□□□□□ -1.15
CLCN3-204ENST00000504131 GZF1Q9H116 711 aaPredicted RBP7.85□□□□□ -1.15
CLCN3-204ENST00000504131 MYH16Q9H6N6 1097 aa7.85□□□□□ -1.15
CLCN3-204ENST00000504131 GTF2A1P52655 376 aaPredicted RBP7.85□□□□□ -1.15
CLCN3-204ENST00000504131 TCERG1O14776 1098 aaKnown RBP7.84□□□□□ -1.15
CLCN3-204ENST00000504131 ZNF513Q8N8E2 541 aaPredicted RBP7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms