RNA–Protein interactions for RNA: ENST00000498814.1

CPNE1-228, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-228ENST00000498814 KANK4Q5T7N3 995 aaPredicted RBP24.41■■□□□ 1.5
CPNE1-228ENST00000498814 EFCAB2Q5VUJ9 269 aa24.41■■□□□ 1.5
CPNE1-228ENST00000498814 AKNAQ7Z591 1439 aa24.4■■□□□ 1.5
CPNE1-228ENST00000498814 ARHGAP5Q13017 1502 aa24.4■■□□□ 1.5
CPNE1-228ENST00000498814 GPATCH8Q9UKJ3 1502 aaKnown RBP24.4■■□□□ 1.5
CPNE1-228ENST00000498814 NCOA2Q15596 1464 aa24.38■■□□□ 1.49
CPNE1-228ENST00000498814 CCNB3Q8WWL7 1395 aa24.38■■□□□ 1.49
CPNE1-228ENST00000498814 ITSN2Q9NZM3 1697 aa24.36■■□□□ 1.49
CPNE1-228ENST00000498814 ADGRL1O94910 1474 aa24.32■■□□□ 1.48
CPNE1-228ENST00000498814 DENND4BO75064 1496 aaPredicted RBP24.31■■□□□ 1.48
CPNE1-228ENST00000498814 RICTORQ6R327 1708 aa24.3■■□□□ 1.48
CPNE1-228ENST00000498814 SCAPERQ9BY12 1400 aa24.29■■□□□ 1.48
CPNE1-228ENST00000498814 CFDP1Q9UEE9 299 aaPredicted RBP24.29■■□□□ 1.48
CPNE1-228ENST00000498814 FRMPD1Q5SYB0 1578 aa24.28■■□□□ 1.48
CPNE1-228ENST00000498814 RAPGEF3O95398 923 aa24.27■■□□□ 1.48
CPNE1-228ENST00000498814 SAMD9LQ8IVG5 1584 aa24.27■■□□□ 1.48
CPNE1-228ENST00000498814 ABCC1P33527 1531 aa24.26■■□□□ 1.47
CPNE1-228ENST00000498814 ZNF777Q9ULD5 760 aaPredicted RBP24.24■■□□□ 1.47
CPNE1-228ENST00000498814 POGZQ7Z3K3 1410 aa24.23■■□□□ 1.47
CPNE1-228ENST00000498814 PLEKHH2Q8IVE3 1493 aa24.23■■□□□ 1.47
CPNE1-228ENST00000498814 ARHGEF12Q9NZN5 1544 aa24.21■■□□□ 1.47
CPNE1-228ENST00000498814 MYOM3Q5VTT5 1437 aa24.21■■□□□ 1.47
CPNE1-228ENST00000498814 ZMYM4Q5VZL5 1548 aa24.2■■□□□ 1.47
CPNE1-228ENST00000498814 KIAA1107Q9UPP5 1409 aa24.2■■□□□ 1.46
CPNE1-228ENST00000498814 ZNF518AQ6AHZ1 1483 aa24.19■■□□□ 1.46
CPNE1-228ENST00000498814 MIA2Q96PC5 1412 aa24.18■■□□□ 1.46
CPNE1-228ENST00000498814 SYCP2Q9BX26 1530 aa24.17■■□□□ 1.46
CPNE1-228ENST00000498814 KDM5CP41229 1560 aa24.16■■□□□ 1.46
CPNE1-228ENST00000498814 ZNF644Q9H582 1327 aaPredicted RBP24.16■■□□□ 1.46
CPNE1-228ENST00000498814 TRAPPC8Q9Y2L5 1435 aa24.16■■□□□ 1.46
CPNE1-228ENST00000498814 CAMSAP2Q08AD1 1489 aa24.14■■□□□ 1.46
CPNE1-228ENST00000498814 MAGI2Q86UL8 1455 aa24.14■■□□□ 1.46
CPNE1-228ENST00000498814 HNRNPMP52272 730 aaKnown RBP eCLIP24.14■■□□□ 1.45
CPNE1-228ENST00000498814 AFAP1Q8N556 730 aa24.14■■□□□ 1.45
CPNE1-228ENST00000498814 MBD5Q9P267 1494 aa24.11■■□□□ 1.45
CPNE1-228ENST00000498814 ZFYVE16Q7Z3T8 1539 aa24.1■■□□□ 1.45
CPNE1-228ENST00000498814 ARHGEF40Q8TER5 1519 aa24.1■■□□□ 1.45
CPNE1-228ENST00000498814 HECW2Q9P2P5 1572 aa24.09■■□□□ 1.45
CPNE1-228ENST00000498814 FGD6Q6ZV73 1430 aa24.09■■□□□ 1.45
CPNE1-228ENST00000498814 MLH3Q9UHC1 1453 aa24.08■■□□□ 1.45
CPNE1-228ENST00000498814 PTPN23Q9H3S7 1636 aa24.08■■□□□ 1.45
CPNE1-228ENST00000498814 PPARGC1BQ86YN6 1023 aaKnown RBP24.07■■□□□ 1.44
CPNE1-228ENST00000498814 ARHGEF5Q12774 1597 aa24.07■■□□□ 1.44
CPNE1-228ENST00000498814 RSPH4AQ5TD94 716 aa24.06■■□□□ 1.44
CPNE1-228ENST00000498814 YEATS2Q9ULM3 1422 aa24.06■■□□□ 1.44
CPNE1-228ENST00000498814 KIDINS220Q9ULH0 1771 aa24.05■■□□□ 1.44
CPNE1-228ENST00000498814 TCOF1Q13428 1488 aaKnown RBP24.04■■□□□ 1.44
CPNE1-228ENST00000498814 CCDC141Q6ZP82 1450 aa24.03■■□□□ 1.44
CPNE1-228ENST00000498814 SPAG9O60271 1321 aaKnown RBP24.02■■□□□ 1.44
CPNE1-228ENST00000498814 INO80Q9ULG1 1556 aaPredicted RBP24.01■■□□□ 1.43
CPNE1-228ENST00000498814 MYT1LQ9UL68 1186 aa24■■□□□ 1.43
CPNE1-228ENST00000498814 ATP10AO60312 1499 aa24■■□□□ 1.43
CPNE1-228ENST00000498814 ATP7AQ04656 1500 aa24■■□□□ 1.43
CPNE1-228ENST00000498814 DIP2CQ9Y2E4 1556 aa23.99■■□□□ 1.43
CPNE1-228ENST00000498814 ABCA6Q8N139 1617 aa23.99■■□□□ 1.43
CPNE1-228ENST00000498814 RTEL1-TNFRSF6BF6WH68 1400 aa23.97■■□□□ 1.43
CPNE1-228ENST00000498814 C9orf84Q5VXU9 1444 aa23.95■■□□□ 1.42
CPNE1-228ENST00000498814 REREQ9P2R6 1566 aa23.95■■□□□ 1.42
CPNE1-228ENST00000498814 TSPY4P0CV99 314 aa23.94■■□□□ 1.42
CPNE1-228ENST00000498814 TSPY10P0CW01 314 aa23.94■■□□□ 1.42
CPNE1-228ENST00000498814 DNMT1P26358 1616 aaKnown RBP23.94■■□□□ 1.42
CPNE1-228ENST00000498814 MAST1Q9Y2H9 1570 aa23.94■■□□□ 1.42
CPNE1-228ENST00000498814 SIGLEC1Q9BZZ2 1709 aa23.93■■□□□ 1.42
CPNE1-228ENST00000498814 CROCC2H7BZ55 1655 aa23.93■■□□□ 1.42
CPNE1-228ENST00000498814 ABCC5O15440 1437 aa23.92■■□□□ 1.42
CPNE1-228ENST00000498814 ADGBQ8N7X0 1667 aa23.91■■□□□ 1.42
CPNE1-228ENST00000498814 FAM50AQ14320 339 aaKnown RBP23.9■■□□□ 1.42
CPNE1-228ENST00000498814 DAPK1P53355 1430 aa23.9■■□□□ 1.42
CPNE1-228ENST00000498814 SHANK2Q9UPX8 1470 aa23.88■■□□□ 1.41
CPNE1-228ENST00000498814 ARID4BQ4LE39 1312 aaPredicted RBP23.88■■□□□ 1.41
CPNE1-228ENST00000498814 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.88■■□□□ 1.41
CPNE1-228ENST00000498814 BCORL1Q5H9F3 1711 aa23.87■■□□□ 1.41
CPNE1-228ENST00000498814 RRBP1Q9P2E9 1410 aaKnown RBP23.86■■□□□ 1.41
CPNE1-228ENST00000498814 AGLP35573 1532 aa23.86■■□□□ 1.41
CPNE1-228ENST00000498814 A2MP01023 1474 aa23.85■■□□□ 1.41
CPNE1-228ENST00000498814 PLXNC1O60486 1568 aa23.84■■□□□ 1.41
CPNE1-228ENST00000498814 KDM4FA0A1W2PPD8 638 aa23.84■■□□□ 1.41
CPNE1-228ENST00000498814 ADAMTSL3P82987 1691 aa23.83■■□□□ 1.4
CPNE1-228ENST00000498814 DHX29Q7Z478 1369 aaKnown RBP23.8■■□□□ 1.4
CPNE1-228ENST00000498814 ANKRD30AQ9BXX3 1397 aa23.76■■□□□ 1.39
CPNE1-228ENST00000498814 ADGRL2O95490 1459 aa23.75■■□□□ 1.39
CPNE1-228ENST00000498814 CHIC2Q9UKJ5 165 aa23.75■■□□□ 1.39
CPNE1-228ENST00000498814 PTPRKQ15262 1439 aa23.75■■□□□ 1.39
CPNE1-228ENST00000498814 DUOX2Q9NRD8 1548 aa23.74■■□□□ 1.39
CPNE1-228ENST00000498814 MLECQ14165 292 aa23.74■■□□□ 1.39
CPNE1-228ENST00000498814 NCOA1Q15788 1441 aa23.74■■□□□ 1.39
CPNE1-228ENST00000498814 MADDQ8WXG6 1647 aa23.73■■□□□ 1.39
CPNE1-228ENST00000498814 KIF15Q9NS87 1388 aa23.73■■□□□ 1.39
CPNE1-228ENST00000498814 FER1L4A9Z1Z3 1794 aa23.73■■□□□ 1.39
CPNE1-228ENST00000498814 RRP7BPQ9NSQ0 103 aa23.71■■□□□ 1.39
CPNE1-228ENST00000498814 EIF2AK4Q9P2K8 1649 aaKnown RBP23.7■■□□□ 1.39
CPNE1-228ENST00000498814 ROCK1Q13464 1354 aa23.68■■□□□ 1.38
CPNE1-228ENST00000498814 RIMS1Q86UR5 1692 aaKnown RBP23.68■■□□□ 1.38
CPNE1-228ENST00000498814 ITGAEP38570 1179 aa23.68■■□□□ 1.38
CPNE1-228ENST00000498814 KIF3BO15066 747 aa23.67■■□□□ 1.38
CPNE1-228ENST00000498814 ERBINQ96RT1 1412 aa23.67■■□□□ 1.38
CPNE1-228ENST00000498814 RNF17Q9BXT8 1623 aaKnown RBP23.64■■□□□ 1.38
CPNE1-228ENST00000498814 GGT6Q6P531 493 aa23.64■■□□□ 1.37
CPNE1-228ENST00000498814 PPP6R1Q9UPN7 881 aa23.64■■□□□ 1.37
CPNE1-228ENST00000498814 PTPRMP28827 1452 aa23.63■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 129.5 ms