RNA–Protein interactions for RNA: ENST00000498463.5

SNX13-212, Transcript of sorting nexin 13, humanhuman

TSL 3

Gene SNX13, Length 687 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-212ENST00000498463 PPP1R15BQ5SWA1 713 aa15.07■□□□□ 0
SNX13-212ENST00000498463 GOLGA2Q08379 1002 aa15.05■□□□□ -0
SNX13-212ENST00000498463 DPYSL4O14531 572 aa15.03■□□□□ -0
SNX13-212ENST00000498463 GPR37O15354 613 aa15.02■□□□□ -0
SNX13-212ENST00000498463 MKRN3Q13064 507 aaKnown RBP15.02■□□□□ -0
SNX13-212ENST00000498463 FAM117AQ9C073 453 aa15.02■□□□□ -0
SNX13-212ENST00000498463 TRIM26Q12899 539 aaPredicted RBP15.01□□□□□ -0.01
SNX13-212ENST00000498463 PDIA6Q15084 440 aa15.01□□□□□ -0.01
SNX13-212ENST00000498463 SPDYE16A6NNV3 312 aaPredicted RBP15□□□□□ -0.01
SNX13-212ENST00000498463 C1orf115Q9H7X2 142 aa15□□□□□ -0.01
SNX13-212ENST00000498463 GPHNQ9NQX3 736 aaPredicted RBP15□□□□□ -0.01
SNX13-212ENST00000498463 EMILIN3Q9NT22 766 aa15□□□□□ -0.01
SNX13-212ENST00000498463 ARID3AQ99856 593 aa14.99□□□□□ -0.01
SNX13-212ENST00000498463 ZNF316A6NFI3 1004 aaPredicted RBP14.97□□□□□ -0.01
SNX13-212ENST00000498463 TMEM106CQ9BVX2 250 aa14.97□□□□□ -0.01
SNX13-212ENST00000498463 RANGAP1P46060 587 aaPredicted RBP14.95□□□□□ -0.02
SNX13-212ENST00000498463 FXR2P51116 673 aaKnown RBP eCLIP14.95□□□□□ -0.02
SNX13-212ENST00000498463 PLEKHG3A1L390 1219 aa14.94□□□□□ -0.02
SNX13-212ENST00000498463 DDRGK1Q96HY6 314 aa14.93□□□□□ -0.02
SNX13-212ENST00000498463 MINK1Q8N4C8 1332 aaPredicted RBP14.92□□□□□ -0.02
SNX13-212ENST00000498463 PHF12Q96QT6 1004 aa14.91□□□□□ -0.02
SNX13-212ENST00000498463 CCDC102AQ96A19 550 aa14.9□□□□□ -0.02
SNX13-212ENST00000498463 MAP2K5Q13163 448 aa14.89□□□□□ -0.03
SNX13-212ENST00000498463 DSG2Q14126 1118 aa14.89□□□□□ -0.03
SNX13-212ENST00000498463 ZRANB1Q9UGI0 708 aa14.89□□□□□ -0.03
SNX13-212ENST00000498463 HRCP23327 699 aa14.88□□□□□ -0.03
SNX13-212ENST00000498463 ARID3CA6NKF2 412 aa14.87□□□□□ -0.03
SNX13-212ENST00000498463 FLIIQ13045 1269 aa14.87□□□□□ -0.03
SNX13-212ENST00000498463 AMHR2Q16671 573 aa14.87□□□□□ -0.03
SNX13-212ENST00000498463 PARP9Q8IXQ6 854 aa14.87□□□□□ -0.03
SNX13-212ENST00000498463 ILDR1Q86SU0 546 aaPredicted RBP14.85□□□□□ -0.03
SNX13-212ENST00000498463 APBB1O00213 710 aa14.84□□□□□ -0.03
SNX13-212ENST00000498463 IRF6O14896 467 aa14.83□□□□□ -0.04
SNX13-212ENST00000498463 TRPC6Q9Y210 931 aa14.83□□□□□ -0.04
SNX13-212ENST00000498463 NUTM2FA1L443 756 aa14.82□□□□□ -0.04
SNX13-212ENST00000498463 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.8□□□□□ -0.045e-6■■■■□ 22.9
SNX13-212ENST00000498463 CD44P16070 742 aaKnown RBP14.79□□□□□ -0.04
SNX13-212ENST00000498463 FOXK1P85037 733 aa14.79□□□□□ -0.04
SNX13-212ENST00000498463 GRXCR2A6NFK2 248 aa14.78□□□□□ -0.04
SNX13-212ENST00000498463 ONECUT3O60422 494 aaPredicted RBP14.78□□□□□ -0.04
SNX13-212ENST00000498463 TMC2Q8TDI7 906 aa14.77□□□□□ -0.05
SNX13-212ENST00000498463 GOPCQ9HD26 462 aa14.77□□□□□ -0.05
SNX13-212ENST00000498463 GNPATO15228 680 aa14.76□□□□□ -0.05
SNX13-212ENST00000498463 MS4A3Q96HJ5 214 aa14.76□□□□□ -0.05
SNX13-212ENST00000498463 TTLL12Q14166 644 aaPredicted RBP14.73□□□□□ -0.05
SNX13-212ENST00000498463 MICALL2Q8IY33 904 aa14.73□□□□□ -0.05
SNX13-212ENST00000498463 HIC1Q14526 733 aa14.72□□□□□ -0.05
SNX13-212ENST00000498463 PIP4P2Q8N4L2 257 aa14.72□□□□□ -0.05
SNX13-212ENST00000498463 OSBPP22059 807 aa14.71□□□□□ -0.05
SNX13-212ENST00000498463 PLPP6Q8IY26 295 aa14.71□□□□□ -0.05
SNX13-212ENST00000498463 FCHSD2O94868 740 aa14.7□□□□□ -0.06
SNX13-212ENST00000498463 FECHP22830 423 aa14.7□□□□□ -0.06
SNX13-212ENST00000498463 A6NJR5 290 aa14.69□□□□□ -0.06
SNX13-212ENST00000498463 TTLL13PA6NNM8 815 aa14.68□□□□□ -0.06
SNX13-212ENST00000498463 TIE1P35590 1138 aa14.68□□□□□ -0.06
SNX13-212ENST00000498463 DPY19L2Q6NUT2 758 aa14.68□□□□□ -0.06
SNX13-212ENST00000498463 NPM2Q86SE8 214 aaKnown RBP14.68□□□□□ -0.06
SNX13-212ENST00000498463 MAP3K9P80192 1104 aa14.67□□□□□ -0.06
SNX13-212ENST00000498463 CCDC82Q8N4S0 544 aa14.67□□□□□ -0.06
SNX13-212ENST00000498463 CLUAP1Q96AJ1 413 aa14.67□□□□□ -0.06
SNX13-212ENST00000498463 TRAK2O60296 914 aa14.65□□□□□ -0.06
SNX13-212ENST00000498463 PDIA4P13667 645 aaKnown RBP14.65□□□□□ -0.06
SNX13-212ENST00000498463 GIGYF2Q6Y7W6 1299 aaKnown RBP14.65□□□□□ -0.06
SNX13-212ENST00000498463 PCMTD1Q96MG8 357 aaPredicted RBP14.65□□□□□ -0.06
SNX13-212ENST00000498463 C2orf72A6NCS6 295 aa14.62□□□□□ -0.07
SNX13-212ENST00000498463 MS4A1P11836 297 aa14.62□□□□□ -0.07
SNX13-212ENST00000498463 CHRDL2Q6WN34 429 aa14.62□□□□□ -0.07
SNX13-212ENST00000498463 MCM6Q14566 821 aa14.6□□□□□ -0.07
SNX13-212ENST00000498463 ZBTB7CA1YPR0 619 aa14.59□□□□□ -0.07
SNX13-212ENST00000498463 KIF3CO14782 793 aa14.59□□□□□ -0.07
SNX13-212ENST00000498463 PTGER2P43116 358 aa14.59□□□□□ -0.07
SNX13-212ENST00000498463 DDX12PQ92771 950 aa14.59□□□□□ -0.07
SNX13-212ENST00000498463 BMP2KQ9NSY1 1161 aaPredicted RBP14.59□□□□□ -0.07
SNX13-212ENST00000498463 UPF1Q92900 1129 aaKnown RBP eCLIP14.58□□□□□ -0.08
SNX13-212ENST00000498463 TRIM35Q9UPQ4 493 aa14.58□□□□□ -0.08
SNX13-212ENST00000498463 PTGDRQ13258 359 aa14.57□□□□□ -0.08
SNX13-212ENST00000498463 PDCD7Q8N8D1 485 aaKnown RBP14.57□□□□□ -0.08
SNX13-212ENST00000498463 PRIM1P49642 420 aaKnown RBP14.56□□□□□ -0.08
SNX13-212ENST00000498463 SH3D19Q5HYK7 790 aa14.55□□□□□ -0.08
SNX13-212ENST00000498463 REPIN1Q9BWE0 567 aaKnown RBP14.55□□□□□ -0.08
SNX13-212ENST00000498463 TMEM121BQ9BXQ6 578 aaPredicted RBP14.55□□□□□ -0.08
SNX13-212ENST00000498463 OXER1Q8TDS5 423 aa14.52□□□□□ -0.09
SNX13-212ENST00000498463 NECTIN2Q92692 538 aa14.51□□□□□ -0.09
SNX13-212ENST00000498463 CCDC9Q9Y3X0 531 aaKnown RBP14.51□□□□□ -0.09
SNX13-212ENST00000498463 PROSER2Q86WR7 435 aaPredicted RBP14.5□□□□□ -0.09
SNX13-212ENST00000498463 BOLA1Q9Y3E2 137 aa14.5□□□□□ -0.09
SNX13-212ENST00000498463 TMUB1Q9BVT8 246 aa14.47□□□□□ -0.09
SNX13-212ENST00000498463 CLCN1P35523 988 aa14.46□□□□□ -0.09
SNX13-212ENST00000498463 ZNF777Q9ULD5 760 aaPredicted RBP14.44□□□□□ -0.1
SNX13-212ENST00000498463 G3V3G9 751 aa14.43□□□□□ -0.1
SNX13-212ENST00000498463 TBC1D12O60347 775 aa14.43□□□□□ -0.1
SNX13-212ENST00000498463 EVI5O60447 810 aa14.43□□□□□ -0.1
SNX13-212ENST00000498463 SKIV2LQ15477 1246 aaKnown RBP14.43□□□□□ -0.1
SNX13-212ENST00000498463 GPCPD1Q9NPB8 672 aa14.43□□□□□ -0.1
SNX13-212ENST00000498463 MDM2Q00987 491 aaPredicted RBP14.42□□□□□ -0.1
SNX13-212ENST00000498463 FNBP4Q8N3X1 1017 aaPredicted RBP14.42□□□□□ -0.1
SNX13-212ENST00000498463 POM121Q96HA1 1249 aa14.42□□□□□ -0.1
SNX13-212ENST00000498463 C19orf67A6NJJ6 358 aa14.4□□□□□ -0.1
SNX13-212ENST00000498463 IRX5P78411 483 aaPredicted RBP14.4□□□□□ -0.1
SNX13-212ENST00000498463 CCDC97Q96F63 343 aaPredicted RBP14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms