RNA–Protein interactions for RNA: ENST00000498056.1

CPNE1-227, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 362 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-227ENST00000498056 PHLDB1Q86UU1 1377 aa21.02■□□□□ 0.96
CPNE1-227ENST00000498056 GPATCH8Q9UKJ3 1502 aaKnown RBP21.02■□□□□ 0.96
CPNE1-227ENST00000498056 SAMD9LQ8IVG5 1584 aa21.02■□□□□ 0.95
CPNE1-227ENST00000498056 TEX14Q8IWB6 1497 aa21.01■□□□□ 0.95
CPNE1-227ENST00000498056 PTPN23Q9H3S7 1636 aa21■□□□□ 0.95
CPNE1-227ENST00000498056 FANCAO15360 1455 aa21■□□□□ 0.95
CPNE1-227ENST00000498056 PLCH2O75038 1416 aa20.98■□□□□ 0.95
CPNE1-227ENST00000498056 CAMSAP2Q08AD1 1489 aa20.96■□□□□ 0.95
CPNE1-227ENST00000498056 ABCC1P33527 1531 aa20.96■□□□□ 0.95
CPNE1-227ENST00000498056 FGD6Q6ZV73 1430 aa20.95■□□□□ 0.94
CPNE1-227ENST00000498056 SYCP2Q9BX26 1530 aa20.94■□□□□ 0.94
CPNE1-227ENST00000498056 CROCC2H7BZ55 1655 aa20.94■□□□□ 0.94
CPNE1-227ENST00000498056 NEO1Q92859 1461 aa20.93■□□□□ 0.94
CPNE1-227ENST00000498056 MIA2Q96PC5 1412 aa20.91■□□□□ 0.94
CPNE1-227ENST00000498056 RICTORQ6R327 1708 aa20.9■□□□□ 0.94
CPNE1-227ENST00000498056 ADGRL1O94910 1474 aa20.9■□□□□ 0.94
CPNE1-227ENST00000498056 CFDP1Q9UEE9 299 aaPredicted RBP20.9■□□□□ 0.94
CPNE1-227ENST00000498056 KDM6BO15054 1643 aa20.89■□□□□ 0.93
CPNE1-227ENST00000498056 ZNF777Q9ULD5 760 aaPredicted RBP20.88■□□□□ 0.93
CPNE1-227ENST00000498056 TCOF1Q13428 1488 aaKnown RBP20.88■□□□□ 0.93
CPNE1-227ENST00000498056 PLEKHH2Q8IVE3 1493 aa20.87■□□□□ 0.93
CPNE1-227ENST00000498056 AKNAQ7Z591 1439 aa20.87■□□□□ 0.93
CPNE1-227ENST00000498056 DNMT1P26358 1616 aaKnown RBP20.86■□□□□ 0.93
CPNE1-227ENST00000498056 FRMPD1Q5SYB0 1578 aa20.85■□□□□ 0.93
CPNE1-227ENST00000498056 EFCAB2Q5VUJ9 269 aa20.85■□□□□ 0.93
CPNE1-227ENST00000498056 RRBP1Q9P2E9 1410 aaKnown RBP20.85■□□□□ 0.93
CPNE1-227ENST00000498056 ARHGEF5Q12774 1597 aa20.84■□□□□ 0.93
CPNE1-227ENST00000498056 ADGBQ8N7X0 1667 aa20.83■□□□□ 0.93
CPNE1-227ENST00000498056 ARHGEF12Q9NZN5 1544 aa20.81■□□□□ 0.92
CPNE1-227ENST00000498056 ZNF644Q9H582 1327 aaPredicted RBP20.8■□□□□ 0.92
CPNE1-227ENST00000498056 POGZQ7Z3K3 1410 aa20.79■□□□□ 0.92
CPNE1-227ENST00000498056 SCAPERQ9BY12 1400 aa20.79■□□□□ 0.92
CPNE1-227ENST00000498056 FAM50AQ14320 339 aaKnown RBP20.79■□□□□ 0.92
CPNE1-227ENST00000498056 CCDC141Q6ZP82 1450 aa20.79■□□□□ 0.92
CPNE1-227ENST00000498056 HECW2Q9P2P5 1572 aa20.79■□□□□ 0.92
CPNE1-227ENST00000498056 KDM5CP41229 1560 aa20.78■□□□□ 0.92
CPNE1-227ENST00000498056 DENND4BO75064 1496 aaPredicted RBP20.78■□□□□ 0.92
CPNE1-227ENST00000498056 ZNF518AQ6AHZ1 1483 aa20.78■□□□□ 0.92
CPNE1-227ENST00000498056 INO80Q9ULG1 1556 aaPredicted RBP20.77■□□□□ 0.92
CPNE1-227ENST00000498056 KIAA1107Q9UPP5 1409 aa20.77■□□□□ 0.91
CPNE1-227ENST00000498056 ZMYM4Q5VZL5 1548 aa20.75■□□□□ 0.91
CPNE1-227ENST00000498056 MBD5Q9P267 1494 aa20.75■□□□□ 0.91
CPNE1-227ENST00000498056 ZFYVE16Q7Z3T8 1539 aa20.74■□□□□ 0.91
CPNE1-227ENST00000498056 DAPK1P53355 1430 aa20.74■□□□□ 0.91
CPNE1-227ENST00000498056 TRAPPC8Q9Y2L5 1435 aa20.74■□□□□ 0.91
CPNE1-227ENST00000498056 MAST1Q9Y2H9 1570 aa20.73■□□□□ 0.91
CPNE1-227ENST00000498056 KIDINS220Q9ULH0 1771 aa20.72■□□□□ 0.91
CPNE1-227ENST00000498056 SHANK2Q9UPX8 1470 aa20.72■□□□□ 0.91
CPNE1-227ENST00000498056 ATP7AQ04656 1500 aa20.72■□□□□ 0.91
CPNE1-227ENST00000498056 ABCA6Q8N139 1617 aa20.71■□□□□ 0.91
CPNE1-227ENST00000498056 COL17A1Q9UMD9 1497 aaPredicted RBP20.71■□□□□ 0.91
CPNE1-227ENST00000498056 HNRNPMP52272 730 aaKnown RBP eCLIP20.71■□□□□ 0.91
CPNE1-227ENST00000498056 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.71■□□□□ 0.91
CPNE1-227ENST00000498056 ARHGEF40Q8TER5 1519 aa20.7■□□□□ 0.9
CPNE1-227ENST00000498056 PLXNC1O60486 1568 aa20.69■□□□□ 0.9
CPNE1-227ENST00000498056 ABCC5O15440 1437 aa20.68■□□□□ 0.9
CPNE1-227ENST00000498056 C9orf84Q5VXU9 1444 aa20.68■□□□□ 0.9
CPNE1-227ENST00000498056 GCC2Q8IWJ2 1684 aa20.67■□□□□ 0.9
CPNE1-227ENST00000498056 DIP2CQ9Y2E4 1556 aa20.66■□□□□ 0.9
CPNE1-227ENST00000498056 RAPGEF3O95398 923 aa20.65■□□□□ 0.9
CPNE1-227ENST00000498056 ITGAEP38570 1179 aa20.65■□□□□ 0.9
CPNE1-227ENST00000498056 AFAP1Q8N556 730 aa20.62■□□□□ 0.89
CPNE1-227ENST00000498056 MLH3Q9UHC1 1453 aa20.62■□□□□ 0.89
CPNE1-227ENST00000498056 SPAG9O60271 1321 aaKnown RBP20.61■□□□□ 0.89
CPNE1-227ENST00000498056 MYT1LQ9UL68 1186 aa20.61■□□□□ 0.89
CPNE1-227ENST00000498056 PTPRKQ15262 1439 aa20.61■□□□□ 0.89
CPNE1-227ENST00000498056 ADGRL2O95490 1459 aa20.6■□□□□ 0.89
CPNE1-227ENST00000498056 MAGI2Q86UL8 1455 aa20.59■□□□□ 0.89
CPNE1-227ENST00000498056 RSPH4AQ5TD94 716 aa20.59■□□□□ 0.89
CPNE1-227ENST00000498056 YEATS2Q9ULM3 1422 aa20.58■□□□□ 0.88
CPNE1-227ENST00000498056 RTEL1-TNFRSF6BF6WH68 1400 aa20.57■□□□□ 0.88
CPNE1-227ENST00000498056 TSPY4P0CV99 314 aa20.57■□□□□ 0.88
CPNE1-227ENST00000498056 TSPY10P0CW01 314 aa20.57■□□□□ 0.88
CPNE1-227ENST00000498056 SIGLEC1Q9BZZ2 1709 aa20.56■□□□□ 0.88
CPNE1-227ENST00000498056 CHIC2Q9UKJ5 165 aa20.56■□□□□ 0.88
CPNE1-227ENST00000498056 EIF2AK4Q9P2K8 1649 aaKnown RBP20.54■□□□□ 0.88
CPNE1-227ENST00000498056 ANKRD30AQ9BXX3 1397 aa20.54■□□□□ 0.88
CPNE1-227ENST00000498056 TRIM26Q12899 539 aaPredicted RBP20.53■□□□□ 0.88
CPNE1-227ENST00000498056 REREQ9P2R6 1566 aa20.53■□□□□ 0.88
CPNE1-227ENST00000498056 DUOX2Q9NRD8 1548 aa20.53■□□□□ 0.88
CPNE1-227ENST00000498056 KIF15Q9NS87 1388 aa20.52■□□□□ 0.88
CPNE1-227ENST00000498056 ROCK1Q13464 1354 aa20.51■□□□□ 0.87
CPNE1-227ENST00000498056 BCORL1Q5H9F3 1711 aa20.5■□□□□ 0.87
CPNE1-227ENST00000498056 NCOA1Q15788 1441 aa20.5■□□□□ 0.87
CPNE1-227ENST00000498056 A2MP01023 1474 aa20.5■□□□□ 0.87
CPNE1-227ENST00000498056 ATP10AO60312 1499 aa20.48■□□□□ 0.87
CPNE1-227ENST00000498056 HFM1A2PYH4 1435 aa20.47■□□□□ 0.87
CPNE1-227ENST00000498056 RRP7BPQ9NSQ0 103 aa20.46■□□□□ 0.87
CPNE1-227ENST00000498056 ERBINQ96RT1 1412 aa20.45■□□□□ 0.86
CPNE1-227ENST00000498056 DEPDC5O75140 1603 aa20.45■□□□□ 0.86
CPNE1-227ENST00000498056 RNF17Q9BXT8 1623 aaKnown RBP20.45■□□□□ 0.86
CPNE1-227ENST00000498056 NAIPQ13075 1403 aa20.44■□□□□ 0.86
CPNE1-227ENST00000498056 UNC13BO14795 1591 aa20.42■□□□□ 0.86
CPNE1-227ENST00000498056 ANKRD50Q9ULJ7 1429 aa20.42■□□□□ 0.86
CPNE1-227ENST00000498056 CEP152O94986 1710 aa20.41■□□□□ 0.86
CPNE1-227ENST00000498056 AGLP35573 1532 aa20.41■□□□□ 0.86
CPNE1-227ENST00000498056 FER1L4A9Z1Z3 1794 aa20.41■□□□□ 0.86
CPNE1-227ENST00000498056 MROH1Q8NDA8 1641 aa20.39■□□□□ 0.86
CPNE1-227ENST00000498056 DHX29Q7Z478 1369 aaKnown RBP20.39■□□□□ 0.85
CPNE1-227ENST00000498056 ZC3H13Q5T200 1668 aaKnown RBP20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 6.6 ms