RNA–Protein interactions for RNA: ENST00000497984.5

SMC4-227, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-227ENST00000497984 DOK7Q18PE1 504 aa13.1□□□□□ -0.31
SMC4-227ENST00000497984 HOXB1P14653 301 aaPredicted RBP13.09□□□□□ -0.31
SMC4-227ENST00000497984 ZNF710Q8N1W2 664 aa13.07□□□□□ -0.32
SMC4-227ENST00000497984 HS3ST6Q96QI5 342 aa13.07□□□□□ -0.32
SMC4-227ENST00000497984 FAM205CA6NFA0 338 aa13.06□□□□□ -0.32
SMC4-227ENST00000497984 KRTAP3-3Q9BYR6 98 aa13.05□□□□□ -0.32
SMC4-227ENST00000497984 KRTAP3-2Q9BYR7 98 aa13.05□□□□□ -0.32
SMC4-227ENST00000497984 RIMBP2O15034 1052 aa13.01□□□□□ -0.33
SMC4-227ENST00000497984 HS6ST3Q8IZP7 471 aa13□□□□□ -0.33
SMC4-227ENST00000497984 KIF3CO14782 793 aa12.99□□□□□ -0.33
SMC4-227ENST00000497984 ZSWIM6Q9HCJ5 1215 aa12.99□□□□□ -0.33
SMC4-227ENST00000497984 PPP1R37O75864 691 aa12.98□□□□□ -0.33
SMC4-227ENST00000497984 GPR153Q6NV75 609 aa12.97□□□□□ -0.33
SMC4-227ENST00000497984 C2orf72A6NCS6 295 aa12.95□□□□□ -0.34
SMC4-227ENST00000497984 ERBB3P21860 1342 aa12.93□□□□□ -0.34
SMC4-227ENST00000497984 CHGAP10645 457 aaKnown RBP12.9□□□□□ -0.34
SMC4-227ENST00000497984 ARSIQ5FYB1 569 aa12.88□□□□□ -0.35
SMC4-227ENST00000497984 VARS2Q5ST30 1063 aaKnown RBP12.88□□□□□ -0.35
SMC4-227ENST00000497984 DNAJC5Q9H3Z4 198 aa12.88□□□□□ -0.35
SMC4-227ENST00000497984 NKX1-1Q15270 411 aaPredicted RBP12.86□□□□□ -0.35
SMC4-227ENST00000497984 KHSRPQ92945 711 aaKnown RBP eCLIP12.85□□□□□ -0.353e-15■■■■■ 43.1
SMC4-227ENST00000497984 TMC2Q8TDI7 906 aa12.84□□□□□ -0.35
SMC4-227ENST00000497984 SLC34A2O95436 690 aa12.81□□□□□ -0.36
SMC4-227ENST00000497984 ZNF687Q8N1G0 1237 aa12.8□□□□□ -0.36
SMC4-227ENST00000497984 ZNF316A6NFI3 1004 aaPredicted RBP12.78□□□□□ -0.36
SMC4-227ENST00000497984 PCDHGA4Q9Y5G9 962 aa12.77□□□□□ -0.37
SMC4-227ENST00000497984 NUDT7P0C024 238 aa12.75□□□□□ -0.37
SMC4-227ENST00000497984 FOXK1P85037 733 aa12.73□□□□□ -0.37
SMC4-227ENST00000497984 GPHNQ9NQX3 736 aaPredicted RBP12.73□□□□□ -0.37
SMC4-227ENST00000497984 RYDENQ9NUL5 291 aaKnown RBP12.7□□□□□ -0.38
SMC4-227ENST00000497984 DSG2Q14126 1118 aa12.69□□□□□ -0.38
SMC4-227ENST00000497984 PLPP6Q8IY26 295 aa12.69□□□□□ -0.38
SMC4-227ENST00000497984 LHX6Q9UPM6 363 aa12.69□□□□□ -0.38
SMC4-227ENST00000497984 PTCD2Q8WV60 388 aaKnown RBP12.68□□□□□ -0.38
SMC4-227ENST00000497984 KDM4FA0A1W2PPD8 638 aa12.67□□□□□ -0.38
SMC4-227ENST00000497984 RNF166Q96A37 237 aaPredicted RBP12.67□□□□□ -0.38
SMC4-227ENST00000497984 GTPBP6O43824 516 aaPredicted RBP12.66□□□□□ -0.38
SMC4-227ENST00000497984 CRISPLD2Q9H0B8 497 aa12.64□□□□□ -0.39
SMC4-227ENST00000497984 POTEEQ6S8J3 1075 aa12.62□□□□□ -0.39
SMC4-227ENST00000497984 DCAF8L2P0C7V8 631 aa12.59□□□□□ -0.39
SMC4-227ENST00000497984 NCKAP5LQ9HCH0 1330 aa12.59□□□□□ -0.39
SMC4-227ENST00000497984 LSM11P83369 360 aaKnown RBP eCLIP12.58□□□□□ -0.47e-97■■■■■ 245.7
SMC4-227ENST00000497984 PBX2P40425 430 aa12.57□□□□□ -0.4
SMC4-227ENST00000497984 ANKRD13DQ6ZTN6 518 aa12.56□□□□□ -0.4
SMC4-227ENST00000497984 MYT1LQ9UL68 1186 aa12.55□□□□□ -0.4
SMC4-227ENST00000497984 AXIN2Q9Y2T1 843 aa12.55□□□□□ -0.4
SMC4-227ENST00000497984 PPP1R15BQ5SWA1 713 aa12.54□□□□□ -0.4
SMC4-227ENST00000497984 OXER1Q8TDS5 423 aa12.54□□□□□ -0.4
SMC4-227ENST00000497984 PSDA5PKW4 1024 aaPredicted RBP12.53□□□□□ -0.4
SMC4-227ENST00000497984 PTGER2P43116 358 aa12.53□□□□□ -0.4
SMC4-227ENST00000497984 TBC1D12O60347 775 aa12.52□□□□□ -0.41
SMC4-227ENST00000497984 PDE4AP27815 886 aa12.51□□□□□ -0.41
SMC4-227ENST00000497984 UPF1Q92900 1129 aaKnown RBP eCLIP12.49□□□□□ -0.411e-11■■■■□ 26.2
SMC4-227ENST00000497984 ARHGAP33O14559 1287 aa12.48□□□□□ -0.41
SMC4-227ENST00000497984 LARP6Q9BRS8 491 aaKnown RBP12.46□□□□□ -0.41
SMC4-227ENST00000497984 MFSD10Q14728 455 aa12.45□□□□□ -0.42
SMC4-227ENST00000497984 PPP4R3BQ5MIZ7 849 aa12.44□□□□□ -0.42
SMC4-227ENST00000497984 CADPS2Q86UW7 1296 aa12.44□□□□□ -0.42
SMC4-227ENST00000497984 DDX27Q96GQ7 796 aaKnown RBP12.43□□□□□ -0.42
SMC4-227ENST00000497984 PSEN2P49810 448 aa12.42□□□□□ -0.42
SMC4-227ENST00000497984 DMRTA1Q5VZB9 504 aa12.42□□□□□ -0.42
SMC4-227ENST00000497984 ADGRD1Q6QNK2 874 aa12.41□□□□□ -0.42
SMC4-227ENST00000497984 TK2O00142 265 aa12.38□□□□□ -0.43
SMC4-227ENST00000497984 ANO8Q9HCE9 1232 aaPredicted RBP12.38□□□□□ -0.43
SMC4-227ENST00000497984 ZNF454Q8N9F8 522 aa12.36□□□□□ -0.43
SMC4-227ENST00000497984 BBXQ8WY36 941 aaPredicted RBP12.36□□□□□ -0.43
SMC4-227ENST00000497984 EMILIN3Q9NT22 766 aa12.36□□□□□ -0.43
SMC4-227ENST00000497984 HRO43593 1189 aa12.35□□□□□ -0.43
SMC4-227ENST00000497984 FOSBP53539 338 aa12.35□□□□□ -0.43
SMC4-227ENST00000497984 EVI5O60447 810 aa12.34□□□□□ -0.43
SMC4-227ENST00000497984 AMER1Q5JTC6 1135 aaPredicted RBP12.33□□□□□ -0.44
SMC4-227ENST00000497984 KCNK17Q96T54 332 aa12.33□□□□□ -0.44
SMC4-227ENST00000497984 BCL2L12Q9HB09 334 aa12.32□□□□□ -0.44
SMC4-227ENST00000497984 JPH4Q96JJ6 628 aa12.31□□□□□ -0.44
SMC4-227ENST00000497984 MAP3K9P80192 1104 aa12.3□□□□□ -0.44
SMC4-227ENST00000497984 RTN4Q9NQC3 1192 aaKnown RBP12.3□□□□□ -0.44
SMC4-227ENST00000497984 CAMK2BQ13554 666 aa12.27□□□□□ -0.45
SMC4-227ENST00000497984 KCNH8Q96L42 1107 aa12.27□□□□□ -0.45
SMC4-227ENST00000497984 VPS9D1Q9Y2B5 631 aa12.26□□□□□ -0.45
SMC4-227ENST00000497984 ZDHHC16Q969W1 377 aa12.25□□□□□ -0.45
SMC4-227ENST00000497984 ADAM33Q9BZ11 813 aa12.25□□□□□ -0.45
SMC4-227ENST00000497984 SLC4A5Q9BY07 1137 aa12.24□□□□□ -0.45
SMC4-227ENST00000497984 PTPREP23469 700 aa12.23□□□□□ -0.45
SMC4-227ENST00000497984 ZBED2Q9BTP6 218 aa12.21□□□□□ -0.45
SMC4-227ENST00000497984 HCSTQ9UBK5 93 aa12.21□□□□□ -0.45
SMC4-227ENST00000497984 PCDHGA10Q9Y5H3 936 aa12.21□□□□□ -0.45
SMC4-227ENST00000497984 SPRYD3Q8NCJ5 442 aa12.2□□□□□ -0.46
SMC4-227ENST00000497984 PLA2G2EQ9NZK7 142 aa12.19□□□□□ -0.46
SMC4-227ENST00000497984 BHMG1C9JSJ3 638 aaPredicted RBP12.18□□□□□ -0.46
SMC4-227ENST00000497984 DPYSL4O14531 572 aa12.17□□□□□ -0.46
SMC4-227ENST00000497984 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.17□□□□□ -0.46
SMC4-227ENST00000497984 KCTD12Q96CX2 325 aaKnown RBP12.16□□□□□ -0.46
SMC4-227ENST00000497984 PHF14O94880 888 aa12.15□□□□□ -0.46
SMC4-227ENST00000497984 STAC3Q96MF2 364 aa12.15□□□□□ -0.46
SMC4-227ENST00000497984 TYW1BQ6NUM6 668 aa12.14□□□□□ -0.47
SMC4-227ENST00000497984 FBXW7Q969H0 707 aa12.12□□□□□ -0.47
SMC4-227ENST00000497984 PPP1R3GB7ZBB8 358 aa12.11□□□□□ -0.47
SMC4-227ENST00000497984 PAXIP1Q6ZW49 1069 aaPredicted RBP12.11□□□□□ -0.47
SMC4-227ENST00000497984 COL9A1P20849 921 aa12.1□□□□□ -0.47
SMC4-227ENST00000497984 CFAP44Q96MT7 982 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms