RNA–Protein interactions for RNA: ENST00000497960.5

NUP50-219, Transcript of nucleoporin 50, humanhuman

TSL 2

Gene NUP50, Length 986 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-219ENST00000497960 POGZQ7Z3K3 1410 aa24.45■■□□□ 1.51
NUP50-219ENST00000497960 ARID4BQ4LE39 1312 aaPredicted RBP24.44■■□□□ 1.5
NUP50-219ENST00000497960 ZMYM4Q5VZL5 1548 aa24.43■■□□□ 1.5
NUP50-219ENST00000497960 MTUS2Q5JR59 1369 aa24.42■■□□□ 1.5
NUP50-219ENST00000497960 MAGI2Q86UL8 1455 aa24.42■■□□□ 1.5
NUP50-219ENST00000497960 ARHGEF40Q8TER5 1519 aa24.41■■□□□ 1.5
NUP50-219ENST00000497960 ZFYVE16Q7Z3T8 1539 aa24.4■■□□□ 1.5
NUP50-219ENST00000497960 PREX2Q70Z35 1606 aa24.38■■□□□ 1.49
NUP50-219ENST00000497960 CDC42BPBQ9Y5S2 1711 aa24.38■■□□□ 1.49
NUP50-219ENST00000497960 ZNF518AQ6AHZ1 1483 aa24.37■■□□□ 1.49
NUP50-219ENST00000497960 YEATS2Q9ULM3 1422 aa24.36■■□□□ 1.49
NUP50-219ENST00000497960 AFAP1Q8N556 730 aa24.35■■□□□ 1.49
NUP50-219ENST00000497960 MYT1LQ9UL68 1186 aa24.34■■□□□ 1.49
NUP50-219ENST00000497960 ZNF777Q9ULD5 760 aaPredicted RBP24.34■■□□□ 1.49
NUP50-219ENST00000497960 CCNB3Q8WWL7 1395 aa24.33■■□□□ 1.49
NUP50-219ENST00000497960 GPATCH8Q9UKJ3 1502 aaKnown RBP24.32■■□□□ 1.48
NUP50-219ENST00000497960 VPS8Q8N3P4 1428 aa24.32■■□□□ 1.48
NUP50-219ENST00000497960 CDC42BPAQ5VT25 1732 aa24.32■■□□□ 1.48
NUP50-219ENST00000497960 CFDP1Q9UEE9 299 aaPredicted RBP24.31■■□□□ 1.48
NUP50-219ENST00000497960 EHBP1L1Q8N3D4 1523 aa24.3■■□□□ 1.48
NUP50-219ENST00000497960 ABCC1P33527 1531 aa24.3■■□□□ 1.48
NUP50-219ENST00000497960 ATP10AO60312 1499 aa24.29■■□□□ 1.48
NUP50-219ENST00000497960 ADAMTSL3P82987 1691 aa24.28■■□□□ 1.48
NUP50-219ENST00000497960 BCORL1Q5H9F3 1711 aa24.28■■□□□ 1.48
NUP50-219ENST00000497960 KDM5CP41229 1560 aa24.28■■□□□ 1.48
NUP50-219ENST00000497960 ARHGEF12Q9NZN5 1544 aa24.27■■□□□ 1.48
NUP50-219ENST00000497960 TRAPPC8Q9Y2L5 1435 aa24.27■■□□□ 1.48
NUP50-219ENST00000497960 C9orf84Q5VXU9 1444 aa24.26■■□□□ 1.47
NUP50-219ENST00000497960 MLECQ14165 292 aa24.23■■□□□ 1.47
NUP50-219ENST00000497960 PTPRMP28827 1452 aa24.23■■□□□ 1.47
NUP50-219ENST00000497960 MLH3Q9UHC1 1453 aa24.23■■□□□ 1.47
NUP50-219ENST00000497960 HECW2Q9P2P5 1572 aa24.23■■□□□ 1.47
NUP50-219ENST00000497960 ITSN2Q9NZM3 1697 aa24.23■■□□□ 1.47
NUP50-219ENST00000497960 PLEKHH2Q8IVE3 1493 aa24.22■■□□□ 1.47
NUP50-219ENST00000497960 TIAM1Q13009 1591 aa24.21■■□□□ 1.47
NUP50-219ENST00000497960 SAMD9LQ8IVG5 1584 aa24.21■■□□□ 1.47
NUP50-219ENST00000497960 HNRNPMP52272 730 aaKnown RBP eCLIP24.21■■□□□ 1.47
NUP50-219ENST00000497960 KIAA1107Q9UPP5 1409 aa24.2■■□□□ 1.46
NUP50-219ENST00000497960 MADDQ8WXG6 1647 aa24.2■■□□□ 1.46
NUP50-219ENST00000497960 SYCP2Q9BX26 1530 aa24.19■■□□□ 1.46
NUP50-219ENST00000497960 SPAG9O60271 1321 aaKnown RBP24.16■■□□□ 1.46
NUP50-219ENST00000497960 SIGLEC1Q9BZZ2 1709 aa24.16■■□□□ 1.46
NUP50-219ENST00000497960 NCOA2Q15596 1464 aa24.16■■□□□ 1.46
NUP50-219ENST00000497960 DIP2CQ9Y2E4 1556 aa24.16■■□□□ 1.46
NUP50-219ENST00000497960 SUPT6HQ7KZ85 1726 aaKnown RBP24.15■■□□□ 1.46
NUP50-219ENST00000497960 LRRC9Q6ZRR7 1453 aa24.13■■□□□ 1.45
NUP50-219ENST00000497960 ZNF644Q9H582 1327 aaPredicted RBP24.13■■□□□ 1.45
NUP50-219ENST00000497960 APLP2Q06481 763 aa24.13■■□□□ 1.45
NUP50-219ENST00000497960 MAP3K1Q13233 1512 aa24.13■■□□□ 1.45
NUP50-219ENST00000497960 RIMS1Q86UR5 1692 aaKnown RBP24.12■■□□□ 1.45
NUP50-219ENST00000497960 ABCA6Q8N139 1617 aa24.12■■□□□ 1.45
NUP50-219ENST00000497960 REREQ9P2R6 1566 aa24.11■■□□□ 1.45
NUP50-219ENST00000497960 PLPPR3Q6T4P5 718 aa24.1■■□□□ 1.45
NUP50-219ENST00000497960 KIDINS220Q9ULH0 1771 aa24.1■■□□□ 1.45
NUP50-219ENST00000497960 KANK4Q5T7N3 995 aaPredicted RBP24.09■■□□□ 1.45
NUP50-219ENST00000497960 AGLP35573 1532 aa24.06■■□□□ 1.44
NUP50-219ENST00000497960 FER1L4A9Z1Z3 1794 aa24.06■■□□□ 1.44
NUP50-219ENST00000497960 MBD5Q9P267 1494 aa24.05■■□□□ 1.44
NUP50-219ENST00000497960 ATP7AQ04656 1500 aa24.05■■□□□ 1.44
NUP50-219ENST00000497960 RSPH4AQ5TD94 716 aa24.04■■□□□ 1.44
NUP50-219ENST00000497960 ESF1Q9H501 851 aaKnown RBP24.03■■□□□ 1.44
NUP50-219ENST00000497960 CAMSAP2Q08AD1 1489 aa24.01■■□□□ 1.43
NUP50-219ENST00000497960 INO80Q9ULG1 1556 aaPredicted RBP24■■□□□ 1.43
NUP50-219ENST00000497960 RTEL1-TNFRSF6BF6WH68 1400 aa23.98■■□□□ 1.43
NUP50-219ENST00000497960 A2MP01023 1474 aa23.98■■□□□ 1.43
NUP50-219ENST00000497960 CCDC141Q6ZP82 1450 aa23.98■■□□□ 1.43
NUP50-219ENST00000497960 CEBPAP49715 358 aaPredicted RBP23.96■■□□□ 1.43
NUP50-219ENST00000497960 MYOM3Q5VTT5 1437 aa23.95■■□□□ 1.42
NUP50-219ENST00000497960 TSPY4P0CV99 314 aa23.95■■□□□ 1.42
NUP50-219ENST00000497960 TSPY10P0CW01 314 aa23.95■■□□□ 1.42
NUP50-219ENST00000497960 MIA2Q96PC5 1412 aa23.93■■□□□ 1.42
NUP50-219ENST00000497960 LMTK3Q96Q04 1460 aa23.93■■□□□ 1.42
NUP50-219ENST00000497960 CNTLNQ9NXG0 1405 aa23.92■■□□□ 1.42
NUP50-219ENST00000497960 PLXNC1O60486 1568 aa23.91■■□□□ 1.42
NUP50-219ENST00000497960 ARHGEF5Q12774 1597 aa23.91■■□□□ 1.42
NUP50-219ENST00000497960 ADGBQ8N7X0 1667 aa23.9■■□□□ 1.42
NUP50-219ENST00000497960 GGT6Q6P531 493 aa23.89■■□□□ 1.41
NUP50-219ENST00000497960 DHX29Q7Z478 1369 aaKnown RBP23.89■■□□□ 1.41
NUP50-219ENST00000497960 HSPA2P54652 639 aa23.86■■□□□ 1.41
NUP50-219ENST00000497960 PPP6R1Q9UPN7 881 aa23.85■■□□□ 1.41
NUP50-219ENST00000497960 SETD1BQ9UPS6 1966 aaKnown RBP23.84■■□□□ 1.41
NUP50-219ENST00000497960 KIF3BO15066 747 aa23.82■■□□□ 1.4
NUP50-219ENST00000497960 ZMYM3Q14202 1370 aa23.81■■□□□ 1.4
NUP50-219ENST00000497960 C3P01024 1663 aa23.81■■□□□ 1.4
NUP50-219ENST00000497960 UHRF1BP1Q6BDS2 1440 aa23.8■■□□□ 1.4
NUP50-219ENST00000497960 PREX1Q8TCU6 1659 aa23.79■■□□□ 1.4
NUP50-219ENST00000497960 FGD6Q6ZV73 1430 aa23.77■■□□□ 1.4
NUP50-219ENST00000497960 MAST1Q9Y2H9 1570 aa23.77■■□□□ 1.4
NUP50-219ENST00000497960 PTPN23Q9H3S7 1636 aa23.77■■□□□ 1.4
NUP50-219ENST00000497960 MROH2AA6NES4 1674 aa23.76■■□□□ 1.39
NUP50-219ENST00000497960 NPATQ14207 1427 aa23.75■■□□□ 1.39
NUP50-219ENST00000497960 CLTCQ00610 1675 aaKnown RBP23.74■■□□□ 1.39
NUP50-219ENST00000497960 ABCC5O15440 1437 aa23.72■■□□□ 1.39
NUP50-219ENST00000497960 TCOF1Q13428 1488 aaKnown RBP23.72■■□□□ 1.39
NUP50-219ENST00000497960 WASHC2CQ9Y4E1 1318 aa23.7■■□□□ 1.38
NUP50-219ENST00000497960 SHANK2Q9UPX8 1470 aa23.69■■□□□ 1.38
NUP50-219ENST00000497960 DAPK1P53355 1430 aa23.68■■□□□ 1.38
NUP50-219ENST00000497960 PTPRKQ15262 1439 aa23.67■■□□□ 1.38
NUP50-219ENST00000497960 FAM135AQ9P2D6 1515 aa23.67■■□□□ 1.38
NUP50-219ENST00000497960 FAM50AQ14320 339 aaKnown RBP23.66■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms