RNA–Protein interactions for RNA: ENST00000496653.4

LIMS1-213, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 4

Gene LIMS1, Length 626 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-213ENST00000496653 DENND4BO75064 1496 aaPredicted RBP22.94■■□□□ 1.26
LIMS1-213ENST00000496653 COL17A1Q9UMD9 1497 aaPredicted RBP22.94■■□□□ 1.26
LIMS1-213ENST00000496653 ADGRL1O94910 1474 aa22.93■■□□□ 1.26
LIMS1-213ENST00000496653 SUPT6HQ7KZ85 1726 aaKnown RBP22.91■■□□□ 1.26
LIMS1-213ENST00000496653 GPATCH8Q9UKJ3 1502 aaKnown RBP22.9■■□□□ 1.26
LIMS1-213ENST00000496653 NCOA2Q15596 1464 aa22.89■■□□□ 1.25
LIMS1-213ENST00000496653 PLEKHH2Q8IVE3 1493 aa22.88■■□□□ 1.25
LIMS1-213ENST00000496653 CFDP1Q9UEE9 299 aaPredicted RBP22.88■■□□□ 1.25
LIMS1-213ENST00000496653 POGZQ7Z3K3 1410 aa22.87■■□□□ 1.25
LIMS1-213ENST00000496653 SCAPERQ9BY12 1400 aa22.87■■□□□ 1.25
LIMS1-213ENST00000496653 ITSN2Q9NZM3 1697 aa22.86■■□□□ 1.25
LIMS1-213ENST00000496653 ZNF518AQ6AHZ1 1483 aa22.85■■□□□ 1.25
LIMS1-213ENST00000496653 CDC42BPAQ5VT25 1732 aa22.83■■□□□ 1.25
LIMS1-213ENST00000496653 RAPGEF3O95398 923 aa22.83■■□□□ 1.25
LIMS1-213ENST00000496653 ABCC1P33527 1531 aa22.82■■□□□ 1.24
LIMS1-213ENST00000496653 MAGI2Q86UL8 1455 aa22.82■■□□□ 1.24
LIMS1-213ENST00000496653 CDC42BPBQ9Y5S2 1711 aa22.82■■□□□ 1.24
LIMS1-213ENST00000496653 ZMYM4Q5VZL5 1548 aa22.82■■□□□ 1.24
LIMS1-213ENST00000496653 KIAA1107Q9UPP5 1409 aa22.82■■□□□ 1.24
LIMS1-213ENST00000496653 FRMPD1Q5SYB0 1578 aa22.8■■□□□ 1.24
LIMS1-213ENST00000496653 KANK4Q5T7N3 995 aaPredicted RBP22.8■■□□□ 1.24
LIMS1-213ENST00000496653 RICTORQ6R327 1708 aa22.78■■□□□ 1.24
LIMS1-213ENST00000496653 ZNF777Q9ULD5 760 aaPredicted RBP22.78■■□□□ 1.24
LIMS1-213ENST00000496653 MYOM3Q5VTT5 1437 aa22.75■■□□□ 1.23
LIMS1-213ENST00000496653 MIA2Q96PC5 1412 aa22.75■■□□□ 1.23
LIMS1-213ENST00000496653 SAMD9LQ8IVG5 1584 aa22.75■■□□□ 1.23
LIMS1-213ENST00000496653 ARHGEF40Q8TER5 1519 aa22.74■■□□□ 1.23
LIMS1-213ENST00000496653 KDM5CP41229 1560 aa22.74■■□□□ 1.23
LIMS1-213ENST00000496653 ZFYVE16Q7Z3T8 1539 aa22.72■■□□□ 1.23
LIMS1-213ENST00000496653 SYCP2Q9BX26 1530 aa22.72■■□□□ 1.23
LIMS1-213ENST00000496653 RSPH4AQ5TD94 716 aa22.7■■□□□ 1.22
LIMS1-213ENST00000496653 MLH3Q9UHC1 1453 aa22.7■■□□□ 1.22
LIMS1-213ENST00000496653 ARHGEF12Q9NZN5 1544 aa22.69■■□□□ 1.22
LIMS1-213ENST00000496653 CAMSAP2Q08AD1 1489 aa22.69■■□□□ 1.22
LIMS1-213ENST00000496653 TRAPPC8Q9Y2L5 1435 aa22.69■■□□□ 1.22
LIMS1-213ENST00000496653 HECW2Q9P2P5 1572 aa22.68■■□□□ 1.22
LIMS1-213ENST00000496653 AFAP1Q8N556 730 aa22.68■■□□□ 1.22
LIMS1-213ENST00000496653 MYT1LQ9UL68 1186 aa22.66■■□□□ 1.22
LIMS1-213ENST00000496653 SPAG9O60271 1321 aaKnown RBP22.64■■□□□ 1.22
LIMS1-213ENST00000496653 HNRNPMP52272 730 aaKnown RBP eCLIP22.64■■□□□ 1.21
LIMS1-213ENST00000496653 CCDC141Q6ZP82 1450 aa22.64■■□□□ 1.21
LIMS1-213ENST00000496653 YEATS2Q9ULM3 1422 aa22.64■■□□□ 1.21
LIMS1-213ENST00000496653 MBD5Q9P267 1494 aa22.63■■□□□ 1.21
LIMS1-213ENST00000496653 C9orf84Q5VXU9 1444 aa22.63■■□□□ 1.21
LIMS1-213ENST00000496653 FGD6Q6ZV73 1430 aa22.63■■□□□ 1.21
LIMS1-213ENST00000496653 ZNF644Q9H582 1327 aaPredicted RBP22.62■■□□□ 1.21
LIMS1-213ENST00000496653 ATP10AO60312 1499 aa22.62■■□□□ 1.21
LIMS1-213ENST00000496653 ARHGEF5Q12774 1597 aa22.61■■□□□ 1.21
LIMS1-213ENST00000496653 RTEL1-TNFRSF6BF6WH68 1400 aa22.59■■□□□ 1.21
LIMS1-213ENST00000496653 REREQ9P2R6 1566 aa22.58■■□□□ 1.2
LIMS1-213ENST00000496653 ARID4BQ4LE39 1312 aaPredicted RBP22.57■■□□□ 1.2
LIMS1-213ENST00000496653 ATP7AQ04656 1500 aa22.57■■□□□ 1.2
LIMS1-213ENST00000496653 TCOF1Q13428 1488 aaKnown RBP22.57■■□□□ 1.2
LIMS1-213ENST00000496653 TSPY4P0CV99 314 aa22.56■■□□□ 1.2
LIMS1-213ENST00000496653 TSPY10P0CW01 314 aa22.56■■□□□ 1.2
LIMS1-213ENST00000496653 INO80Q9ULG1 1556 aaPredicted RBP22.55■■□□□ 1.2
LIMS1-213ENST00000496653 DIP2CQ9Y2E4 1556 aa22.55■■□□□ 1.2
LIMS1-213ENST00000496653 PTPN23Q9H3S7 1636 aa22.54■■□□□ 1.2
LIMS1-213ENST00000496653 ABCA6Q8N139 1617 aa22.52■■□□□ 1.2
LIMS1-213ENST00000496653 SHANK2Q9UPX8 1470 aa22.51■■□□□ 1.19
LIMS1-213ENST00000496653 KIDINS220Q9ULH0 1771 aa22.5■■□□□ 1.19
LIMS1-213ENST00000496653 AGLP35573 1532 aa22.5■■□□□ 1.19
LIMS1-213ENST00000496653 MAST1Q9Y2H9 1570 aa22.47■■□□□ 1.19
LIMS1-213ENST00000496653 KDM4FA0A1W2PPD8 638 aa22.47■■□□□ 1.19
LIMS1-213ENST00000496653 AEBP2Q6ZN18 517 aaPredicted RBP22.47■■□□□ 1.19
LIMS1-213ENST00000496653 A2MP01023 1474 aa22.47■■□□□ 1.19
LIMS1-213ENST00000496653 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.45■■□□□ 1.18
LIMS1-213ENST00000496653 DAPK1P53355 1430 aa22.45■■□□□ 1.18
LIMS1-213ENST00000496653 FAM50AQ14320 339 aaKnown RBP22.44■■□□□ 1.18
LIMS1-213ENST00000496653 BCORL1Q5H9F3 1711 aa22.43■■□□□ 1.18
LIMS1-213ENST00000496653 DNMT1P26358 1616 aaKnown RBP22.43■■□□□ 1.18
LIMS1-213ENST00000496653 PLXNC1O60486 1568 aa22.43■■□□□ 1.18
LIMS1-213ENST00000496653 ABCC5O15440 1437 aa22.43■■□□□ 1.18
LIMS1-213ENST00000496653 ADGBQ8N7X0 1667 aa22.42■■□□□ 1.18
LIMS1-213ENST00000496653 DHX29Q7Z478 1369 aaKnown RBP22.4■■□□□ 1.18
LIMS1-213ENST00000496653 ADAMTSL3P82987 1691 aa22.39■■□□□ 1.18
LIMS1-213ENST00000496653 PPARGC1BQ86YN6 1023 aaKnown RBP22.39■■□□□ 1.17
LIMS1-213ENST00000496653 CROCC2H7BZ55 1655 aa22.38■■□□□ 1.17
LIMS1-213ENST00000496653 ANKRD30AQ9BXX3 1397 aa22.38■■□□□ 1.17
LIMS1-213ENST00000496653 RRBP1Q9P2E9 1410 aaKnown RBP22.37■■□□□ 1.17
LIMS1-213ENST00000496653 ESF1Q9H501 851 aaKnown RBP22.36■■□□□ 1.17
LIMS1-213ENST00000496653 CNTLNQ9NXG0 1405 aa22.35■■□□□ 1.17
LIMS1-213ENST00000496653 MLECQ14165 292 aa22.35■■□□□ 1.17
LIMS1-213ENST00000496653 PPP6R1Q9UPN7 881 aa22.35■■□□□ 1.17
LIMS1-213ENST00000496653 KIF15Q9NS87 1388 aa22.35■■□□□ 1.17
LIMS1-213ENST00000496653 DUOX2Q9NRD8 1548 aa22.34■■□□□ 1.17
LIMS1-213ENST00000496653 SIGLEC1Q9BZZ2 1709 aa22.34■■□□□ 1.17
LIMS1-213ENST00000496653 MADDQ8WXG6 1647 aa22.33■■□□□ 1.17
LIMS1-213ENST00000496653 ADGRL2O95490 1459 aa22.33■■□□□ 1.16
LIMS1-213ENST00000496653 ERBINQ96RT1 1412 aa22.32■■□□□ 1.16
LIMS1-213ENST00000496653 FAM135AQ9P2D6 1515 aa22.32■■□□□ 1.16
LIMS1-213ENST00000496653 PTPRMP28827 1452 aa22.31■■□□□ 1.16
LIMS1-213ENST00000496653 EIF2AK4Q9P2K8 1649 aaKnown RBP22.28■■□□□ 1.16
LIMS1-213ENST00000496653 ROCK1Q13464 1354 aa22.28■■□□□ 1.16
LIMS1-213ENST00000496653 NCOA1Q15788 1441 aa22.28■■□□□ 1.16
LIMS1-213ENST00000496653 KIF3BO15066 747 aa22.27■■□□□ 1.16
LIMS1-213ENST00000496653 FER1L4A9Z1Z3 1794 aa22.27■■□□□ 1.16
LIMS1-213ENST00000496653 RRP7BPQ9NSQ0 103 aa22.26■■□□□ 1.15
LIMS1-213ENST00000496653 GGT6Q6P531 493 aa22.25■■□□□ 1.15
LIMS1-213ENST00000496653 CHIC2Q9UKJ5 165 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms