RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 C2orf72A6NCS6 295 aa15.24■□□□□ 0.03
SF3B1-212ENST00000496458 CADPS2Q86UW7 1296 aa15.24■□□□□ 0.03
SF3B1-212ENST00000496458 TMC2Q8TDI7 906 aa15.24■□□□□ 0.03
SF3B1-212ENST00000496458 KIF3CO14782 793 aa15.21■□□□□ 0.03
SF3B1-212ENST00000496458 NCKAP5LQ9HCH0 1330 aa15.18■□□□□ 0.02
SF3B1-212ENST00000496458 GPHNQ9NQX3 736 aaPredicted RBP15.18■□□□□ 0.02
SF3B1-212ENST00000496458 CRISPLD2Q9H0B8 497 aa15.17■□□□□ 0.02
SF3B1-212ENST00000496458 TSHZ2Q9NRE2 1034 aa15.16■□□□□ 0.02
SF3B1-212ENST00000496458 PDE4AP27815 886 aa15.14■□□□□ 0.01
SF3B1-212ENST00000496458 SNPHO15079 494 aa15.12■□□□□ 0.01
SF3B1-212ENST00000496458 DSG2Q14126 1118 aa15.11■□□□□ 0.01
SF3B1-212ENST00000496458 LARP6Q9BRS8 491 aaKnown RBP15.11■□□□□ 0.01
SF3B1-212ENST00000496458 FOXK1P85037 733 aa15.1■□□□□ 0.01
SF3B1-212ENST00000496458 HAP1P54257 671 aaPredicted RBP15.09■□□□□ 0.01
SF3B1-212ENST00000496458 HOXB3P14651 431 aaPredicted RBP15.07■□□□□ 0
SF3B1-212ENST00000496458 PPP1R15BQ5SWA1 713 aa15.07■□□□□ 0
SF3B1-212ENST00000496458 PLPP6Q8IY26 295 aa15.07■□□□□ 0
SF3B1-212ENST00000496458 DDX27Q96GQ7 796 aaKnown RBP15.07■□□□□ 0
SF3B1-212ENST00000496458 FAM163AQ96GL9 167 aaPredicted RBP15.06■□□□□ 0
SF3B1-212ENST00000496458 DOK7Q18PE1 504 aa15.05■□□□□ -0
SF3B1-212ENST00000496458 MFSD10Q14728 455 aa15.04■□□□□ -0
SF3B1-212ENST00000496458 ZNF710Q8N1W2 664 aa15.01□□□□□ -0.01
SF3B1-212ENST00000496458 RIMBP2O15034 1052 aa14.98□□□□□ -0.01
SF3B1-212ENST00000496458 ST18O60284 1047 aa14.98□□□□□ -0.01
SF3B1-212ENST00000496458 LCE2DQ5TA82 110 aaPredicted RBP14.96□□□□□ -0.01
SF3B1-212ENST00000496458 WDR70Q9NW82 654 aa14.95□□□□□ -0.02
SF3B1-212ENST00000496458 SLC34A2O95436 690 aa14.93□□□□□ -0.02
SF3B1-212ENST00000496458 ZSWIM6Q9HCJ5 1215 aa14.92□□□□□ -0.02
SF3B1-212ENST00000496458 UPF1Q92900 1129 aaKnown RBP eCLIP14.9□□□□□ -0.02
SF3B1-212ENST00000496458 PCDHGA4Q9Y5G9 962 aa14.89□□□□□ -0.03
SF3B1-212ENST00000496458 ARSIQ5FYB1 569 aa14.88□□□□□ -0.03
SF3B1-212ENST00000496458 GPR153Q6NV75 609 aa14.88□□□□□ -0.03
SF3B1-212ENST00000496458 PTCD2Q8WV60 388 aaKnown RBP14.88□□□□□ -0.03
SF3B1-212ENST00000496458 HOXB1P14653 301 aaPredicted RBP14.87□□□□□ -0.03
SF3B1-212ENST00000496458 KHSRPQ92945 711 aaKnown RBP eCLIP14.87□□□□□ -0.03
SF3B1-212ENST00000496458 MARVELD3Q96A59 401 aa14.86□□□□□ -0.03
SF3B1-212ENST00000496458 CAMK2BQ13554 666 aa14.85□□□□□ -0.03
SF3B1-212ENST00000496458 OXER1Q8TDS5 423 aa14.85□□□□□ -0.03
SF3B1-212ENST00000496458 EMILIN3Q9NT22 766 aa14.85□□□□□ -0.03
SF3B1-212ENST00000496458 E2F4Q16254 413 aa14.83□□□□□ -0.04
SF3B1-212ENST00000496458 TBC1D12O60347 775 aa14.82□□□□□ -0.04
SF3B1-212ENST00000496458 NUDT7P0C024 238 aa14.81□□□□□ -0.04
SF3B1-212ENST00000496458 EMP3P54852 163 aa14.81□□□□□ -0.04
SF3B1-212ENST00000496458 KDM2AQ9Y2K7 1162 aa14.81□□□□□ -0.04
SF3B1-212ENST00000496458 VSIG10Q8N0Z9 540 aa14.78□□□□□ -0.04
SF3B1-212ENST00000496458 MAP3K9P80192 1104 aa14.77□□□□□ -0.05
SF3B1-212ENST00000496458 POTEMA6NI47 508 aa14.76□□□□□ -0.05
SF3B1-212ENST00000496458 POTEGQ6S5H5 508 aa14.76□□□□□ -0.05
SF3B1-212ENST00000496458 DPYSL4O14531 572 aa14.75□□□□□ -0.05
SF3B1-212ENST00000496458 FAM205CA6NFA0 338 aa14.72□□□□□ -0.05
SF3B1-212ENST00000496458 KCNV2Q8TDN2 545 aa14.72□□□□□ -0.05
SF3B1-212ENST00000496458 ERBB3P21860 1342 aa14.71□□□□□ -0.05
SF3B1-212ENST00000496458 KDM4FA0A1W2PPD8 638 aa14.71□□□□□ -0.05
SF3B1-212ENST00000496458 EVI5O60447 810 aa14.7□□□□□ -0.06
SF3B1-212ENST00000496458 ZNF316A6NFI3 1004 aaPredicted RBP14.69□□□□□ -0.06
SF3B1-212ENST00000496458 LHX6Q9UPM6 363 aa14.69□□□□□ -0.06
SF3B1-212ENST00000496458 VARS2Q5ST30 1063 aaKnown RBP14.67□□□□□ -0.06
SF3B1-212ENST00000496458 P3H3Q8IVL6 736 aa14.67□□□□□ -0.06
SF3B1-212ENST00000496458 HS3ST6Q96QI5 342 aa14.67□□□□□ -0.06
SF3B1-212ENST00000496458 ARIH1Q9Y4X5 557 aaPredicted RBP14.65□□□□□ -0.06
SF3B1-212ENST00000496458 POTEB3A0JP26 581 aa14.64□□□□□ -0.07
SF3B1-212ENST00000496458 POTEBQ6S5H4 581 aa14.64□□□□□ -0.07
SF3B1-212ENST00000496458 PDIA6Q15084 440 aa14.62□□□□□ -0.07
SF3B1-212ENST00000496458 ARHGEF1Q92888 912 aaKnown RBP14.62□□□□□ -0.07
SF3B1-212ENST00000496458 ANO8Q9HCE9 1232 aaPredicted RBP14.62□□□□□ -0.07
SF3B1-212ENST00000496458 SLC24A1O60721 1099 aa14.6□□□□□ -0.07
SF3B1-212ENST00000496458 SPDYE16A6NNV3 312 aaPredicted RBP14.58□□□□□ -0.08
SF3B1-212ENST00000496458 PSDA5PKW4 1024 aaPredicted RBP14.57□□□□□ -0.08
SF3B1-212ENST00000496458 ZNF454Q8N9F8 522 aa14.56□□□□□ -0.08
SF3B1-212ENST00000496458 PPP4R3BQ5MIZ7 849 aa14.53□□□□□ -0.08
SF3B1-212ENST00000496458 CDAN1Q8IWY9 1227 aa14.53□□□□□ -0.08
SF3B1-212ENST00000496458 JPH4Q96JJ6 628 aa14.53□□□□□ -0.08
SF3B1-212ENST00000496458 FOSBP53539 338 aa14.52□□□□□ -0.09
SF3B1-212ENST00000496458 DDX12PQ92771 950 aa14.52□□□□□ -0.09
SF3B1-212ENST00000496458 ZNF687Q8N1G0 1237 aa14.51□□□□□ -0.09
SF3B1-212ENST00000496458 PTGER2P43116 358 aa14.49□□□□□ -0.09
SF3B1-212ENST00000496458 PCDHGA10Q9Y5H3 936 aa14.49□□□□□ -0.09
SF3B1-212ENST00000496458 PHF14O94880 888 aa14.47□□□□□ -0.09
SF3B1-212ENST00000496458 GRXCR2A6NFK2 248 aa14.46□□□□□ -0.09
SF3B1-212ENST00000496458 ZDHHC16Q969W1 377 aa14.45□□□□□ -0.1
SF3B1-212ENST00000496458 NBR1Q14596 966 aa14.44□□□□□ -0.1
SF3B1-212ENST00000496458 TYW1BQ6NUM6 668 aa14.44□□□□□ -0.1
SF3B1-212ENST00000496458 SEMA3EO15041 775 aa14.43□□□□□ -0.1
SF3B1-212ENST00000496458 MLLT3P42568 568 aaPredicted RBP14.42□□□□□ -0.1
SF3B1-212ENST00000496458 POTEEQ6S8J3 1075 aa14.42□□□□□ -0.1
SF3B1-212ENST00000496458 EPAS1Q99814 870 aa14.42□□□□□ -0.1
SF3B1-212ENST00000496458 ADAM33Q9BZ11 813 aa14.42□□□□□ -0.1
SF3B1-212ENST00000496458 PCDH10Q9P2E7 1040 aa14.42□□□□□ -0.1
SF3B1-212ENST00000496458 AXIN2Q9Y2T1 843 aa14.42□□□□□ -0.1
SF3B1-212ENST00000496458 FBXW7Q969H0 707 aa14.41□□□□□ -0.1
SF3B1-212ENST00000496458 KRTAP3-3Q9BYR6 98 aa14.41□□□□□ -0.1
SF3B1-212ENST00000496458 KRTAP3-2Q9BYR7 98 aa14.41□□□□□ -0.1
SF3B1-212ENST00000496458 PBX2P40425 430 aa14.4□□□□□ -0.1
SF3B1-212ENST00000496458 BCL2L12Q9HB09 334 aa14.4□□□□□ -0.1
SF3B1-212ENST00000496458 RBM33Q96EV2 1170 aaKnown RBP14.38□□□□□ -0.11
SF3B1-212ENST00000496458 KCNK17Q96T54 332 aa14.38□□□□□ -0.11
SF3B1-212ENST00000496458 ARHGAP33O14559 1287 aa14.37□□□□□ -0.11
SF3B1-212ENST00000496458 PSEN2P49810 448 aa14.37□□□□□ -0.11
SF3B1-212ENST00000496458 PTPREP23469 700 aa14.35□□□□□ -0.11
SF3B1-212ENST00000496458 EN1Q05925 392 aaPredicted RBP14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms