RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 TMEM121BQ9BXQ6 578 aaPredicted RBP13.61□□□□□ -0.23
VIM-207ENST00000495528 NCKAP5LQ9HCH0 1330 aa13.6□□□□□ -0.23
VIM-207ENST00000495528 RB1CC1Q8TDY2 1594 aa13.59□□□□□ -0.23
VIM-207ENST00000495528 WDR70Q9NW82 654 aa13.59□□□□□ -0.23
VIM-207ENST00000495528 LARP6Q9BRS8 491 aaKnown RBP13.58□□□□□ -0.24
VIM-207ENST00000495528 PDE4AP27815 886 aa13.57□□□□□ -0.24
VIM-207ENST00000495528 C3orf67Q6ZVT6 689 aa13.56□□□□□ -0.24
VIM-207ENST00000495528 CRISPLD2Q9H0B8 497 aa13.55□□□□□ -0.24
VIM-207ENST00000495528 TMC2Q8TDI7 906 aa13.54□□□□□ -0.24
VIM-207ENST00000495528 POTEJP0CG39 1038 aa13.51□□□□□ -0.25
VIM-207ENST00000495528 TMEM92Q6UXU6 159 aa13.51□□□□□ -0.25
VIM-207ENST00000495528 GPHNQ9NQX3 736 aaPredicted RBP13.51□□□□□ -0.25
VIM-207ENST00000495528 C2orf72A6NCS6 295 aa13.5□□□□□ -0.25
VIM-207ENST00000495528 OTUD5Q96G74 571 aa13.5□□□□□ -0.25
VIM-207ENST00000495528 DDX27Q96GQ7 796 aaKnown RBP13.5□□□□□ -0.25
VIM-207ENST00000495528 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.48□□□□□ -0.25
VIM-207ENST00000495528 NACADO15069 1562 aa13.48□□□□□ -0.25
VIM-207ENST00000495528 MFSD10Q14728 455 aa13.46□□□□□ -0.25
VIM-207ENST00000495528 DSG2Q14126 1118 aa13.45□□□□□ -0.26
VIM-207ENST00000495528 PPP1R15BQ5SWA1 713 aa13.45□□□□□ -0.26
VIM-207ENST00000495528 KIF3CO14782 793 aa13.43□□□□□ -0.26
VIM-207ENST00000495528 E2F4Q16254 413 aa13.42□□□□□ -0.26
VIM-207ENST00000495528 SCUBE2Q9NQ36 999 aa13.41□□□□□ -0.26
VIM-207ENST00000495528 FOXK1P85037 733 aa13.4□□□□□ -0.26
VIM-207ENST00000495528 PLPP6Q8IY26 295 aa13.4□□□□□ -0.26
VIM-207ENST00000495528 KCNV2Q8TDN2 545 aa13.4□□□□□ -0.26
VIM-207ENST00000495528 MAMSTRQ6ZN01 415 aa13.37□□□□□ -0.27
VIM-207ENST00000495528 P3H3Q8IVL6 736 aa13.36□□□□□ -0.27
VIM-207ENST00000495528 SLAIN1Q8ND83 568 aa13.36□□□□□ -0.27
VIM-207ENST00000495528 CAMK2BQ13554 666 aa13.31□□□□□ -0.28
VIM-207ENST00000495528 BCANQ96GW7 911 aa13.29□□□□□ -0.28
VIM-207ENST00000495528 EMILIN3Q9NT22 766 aa13.29□□□□□ -0.28
VIM-207ENST00000495528 NBR1Q14596 966 aa13.28□□□□□ -0.28
VIM-207ENST00000495528 UPF1Q92900 1129 aaKnown RBP eCLIP13.28□□□□□ -0.28
VIM-207ENST00000495528 ARHGEF1Q92888 912 aaKnown RBP13.26□□□□□ -0.29
VIM-207ENST00000495528 MYO15BQ96JP2 1530 aa13.25□□□□□ -0.29
VIM-207ENST00000495528 DPYSL4O14531 572 aa13.25□□□□□ -0.29
VIM-207ENST00000495528 BICRAQ9NZM4 1560 aa13.24□□□□□ -0.29
VIM-207ENST00000495528 UNC13AQ9UPW8 1703 aa13.23□□□□□ -0.29
VIM-207ENST00000495528 MAP3K9P80192 1104 aa13.2□□□□□ -0.3
VIM-207ENST00000495528 OXER1Q8TDS5 423 aa13.18□□□□□ -0.3
VIM-207ENST00000495528 ARIH1Q9Y4X5 557 aaPredicted RBP13.17□□□□□ -0.3
VIM-207ENST00000495528 SEMA3EO15041 775 aa13.15□□□□□ -0.3
VIM-207ENST00000495528 HOXB3P14651 431 aaPredicted RBP13.15□□□□□ -0.3
VIM-207ENST00000495528 DOK7Q18PE1 504 aa13.15□□□□□ -0.3
VIM-207ENST00000495528 SLC34A2O95436 690 aa13.14□□□□□ -0.31
VIM-207ENST00000495528 PTCD2Q8WV60 388 aaKnown RBP13.14□□□□□ -0.31
VIM-207ENST00000495528 TBC1D12O60347 775 aa13.13□□□□□ -0.31
VIM-207ENST00000495528 PCDHGA4Q9Y5G9 962 aa13.13□□□□□ -0.31
VIM-207ENST00000495528 ZNF710Q8N1W2 664 aa13.12□□□□□ -0.31
VIM-207ENST00000495528 RIMBP2O15034 1052 aa13.09□□□□□ -0.31
VIM-207ENST00000495528 SNPHO15079 494 aa13.09□□□□□ -0.31
VIM-207ENST00000495528 EVI5O60447 810 aa13.09□□□□□ -0.31
VIM-207ENST00000495528 PDIA6Q15084 440 aa13.09□□□□□ -0.31
VIM-207ENST00000495528 ARSIQ5FYB1 569 aa13.09□□□□□ -0.31
VIM-207ENST00000495528 KHSRPQ92945 711 aaKnown RBP eCLIP13.09□□□□□ -0.31
VIM-207ENST00000495528 SPDYE16A6NNV3 312 aaPredicted RBP13.08□□□□□ -0.32
VIM-207ENST00000495528 LCE2DQ5TA82 110 aaPredicted RBP13.08□□□□□ -0.32
VIM-207ENST00000495528 ZCCHC6Q5VYS8 1495 aaKnown RBP13.06□□□□□ -0.32
VIM-207ENST00000495528 MLLT3P42568 568 aaPredicted RBP13.05□□□□□ -0.32
VIM-207ENST00000495528 TESPA1A2RU30 521 aaPredicted RBP13.04□□□□□ -0.32
VIM-207ENST00000495528 ZNF316A6NFI3 1004 aaPredicted RBP13.04□□□□□ -0.32
VIM-207ENST00000495528 POTEMA6NI47 508 aa13.04□□□□□ -0.32
VIM-207ENST00000495528 NUDT7P0C024 238 aa13.04□□□□□ -0.32
VIM-207ENST00000495528 FAM163AQ96GL9 167 aaPredicted RBP13.04□□□□□ -0.32
VIM-207ENST00000495528 DCAF1Q9Y4B6 1507 aa13.03□□□□□ -0.32
VIM-207ENST00000495528 GRXCR2A6NFK2 248 aa13.02□□□□□ -0.33
VIM-207ENST00000495528 GPR153Q6NV75 609 aa13.02□□□□□ -0.33
VIM-207ENST00000495528 DDX12PQ92771 950 aa13.02□□□□□ -0.33
VIM-207ENST00000495528 POTEGQ6S5H5 508 aa13.01□□□□□ -0.33
VIM-207ENST00000495528 ZSWIM6Q9HCJ5 1215 aa13.01□□□□□ -0.33
VIM-207ENST00000495528 CECR2Q9BXF3 1484 aa12.99□□□□□ -0.33
VIM-207ENST00000495528 SHROOM4Q9ULL8 1493 aa12.99□□□□□ -0.33
VIM-207ENST00000495528 TULP1O00294 542 aaPredicted RBP12.99□□□□□ -0.33
VIM-207ENST00000495528 SMYD5Q6GMV2 418 aa12.97□□□□□ -0.33
VIM-207ENST00000495528 CC2D2AQ9P2K1 1620 aa12.97□□□□□ -0.33
VIM-207ENST00000495528 ANO8Q9HCE9 1232 aaPredicted RBP12.96□□□□□ -0.33
VIM-207ENST00000495528 SCRIBQ14160 1630 aa12.95□□□□□ -0.34
VIM-207ENST00000495528 KDM4FA0A1W2PPD8 638 aa12.95□□□□□ -0.34
VIM-207ENST00000495528 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.95□□□□□ -0.34
VIM-207ENST00000495528 HOXB1P14653 301 aaPredicted RBP12.94□□□□□ -0.34
VIM-207ENST00000495528 LMOD2Q6P5Q4 547 aa12.93□□□□□ -0.34
VIM-207ENST00000495528 ST18O60284 1047 aa12.92□□□□□ -0.34
VIM-207ENST00000495528 PTGER2P43116 358 aa12.92□□□□□ -0.34
VIM-207ENST00000495528 EIF4G1Q04637 1599 aaKnown RBP12.92□□□□□ -0.34
VIM-207ENST00000495528 RBM26Q5T8P6 1007 aaKnown RBP12.92□□□□□ -0.34
VIM-207ENST00000495528 LHX6Q9UPM6 363 aa12.92□□□□□ -0.34
VIM-207ENST00000495528 ZNF454Q8N9F8 522 aa12.89□□□□□ -0.35
VIM-207ENST00000495528 OSBPP22059 807 aa12.88□□□□□ -0.35
VIM-207ENST00000495528 MARVELD3Q96A59 401 aa12.88□□□□□ -0.35
VIM-207ENST00000495528 PHF14O94880 888 aa12.87□□□□□ -0.35
VIM-207ENST00000495528 TPRNQ4KMQ1 711 aa12.87□□□□□ -0.35
VIM-207ENST00000495528 RBM33Q96EV2 1170 aaKnown RBP12.87□□□□□ -0.35
VIM-207ENST00000495528 PLSCR2Q9NRY7 297 aa12.87□□□□□ -0.35
VIM-207ENST00000495528 PCDHGA10Q9Y5H3 936 aa12.87□□□□□ -0.35
VIM-207ENST00000495528 PRIM1P49642 420 aaKnown RBP12.86□□□□□ -0.35
VIM-207ENST00000495528 JPH4Q96JJ6 628 aa12.85□□□□□ -0.35
VIM-207ENST00000495528 PRKCSHP14314 528 aaPredicted RBP12.84□□□□□ -0.35
VIM-207ENST00000495528 FOSBP53539 338 aa12.84□□□□□ -0.35
VIM-207ENST00000495528 EMP3P54852 163 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 109.6 ms