RNA–Protein interactions for RNA: ENST00000494546.1

CBX4-203, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-203ENST00000494546 POGZQ7Z3K3 1410 aa53.17■■■■■ 6.1
CBX4-203ENST00000494546 ZMYM4Q5VZL5 1548 aa53.16■■■■■ 6.1
CBX4-203ENST00000494546 ARHGEF40Q8TER5 1519 aa53.16■■■■■ 6.1
CBX4-203ENST00000494546 CDC42BPBQ9Y5S2 1711 aa53.11■■■■■ 6.09
CBX4-203ENST00000494546 ARID4BQ4LE39 1312 aaPredicted RBP53.1■■■■■ 6.09
CBX4-203ENST00000494546 PREX2Q70Z35 1606 aa53.09■■■■■ 6.09
CBX4-203ENST00000494546 ZFYVE16Q7Z3T8 1539 aa53.07■■■■■ 6.09
CBX4-203ENST00000494546 YEATS2Q9ULM3 1422 aa53.06■■■■■ 6.08
CBX4-203ENST00000494546 MAGI2Q86UL8 1455 aa53.05■■■■■ 6.08
CBX4-203ENST00000494546 MTUS2Q5JR59 1369 aa53.04■■■■■ 6.08
CBX4-203ENST00000494546 CDC42BPAQ5VT25 1732 aa52.99■■■■■ 6.07
CBX4-203ENST00000494546 ZNF518AQ6AHZ1 1483 aa52.96■■■■■ 6.07
CBX4-203ENST00000494546 AFAP1Q8N556 730 aa52.95■■■■■ 6.07
CBX4-203ENST00000494546 GPATCH8Q9UKJ3 1502 aaKnown RBP52.91■■■■■ 6.06
CBX4-203ENST00000494546 ADAMTSL3P82987 1691 aa52.9■■■■■ 6.06
CBX4-203ENST00000494546 BCORL1Q5H9F3 1711 aa52.88■■■■■ 6.06
CBX4-203ENST00000494546 ABCC1P33527 1531 aa52.88■■■■■ 6.06
CBX4-203ENST00000494546 ZNF777Q9ULD5 760 aaPredicted RBP52.88■■■■■ 6.06
CBX4-203ENST00000494546 EHBP1L1Q8N3D4 1523 aa52.86■■■■■ 6.05
CBX4-203ENST00000494546 CCNB3Q8WWL7 1395 aa52.85■■■■■ 6.05
CBX4-203ENST00000494546 MYT1LQ9UL68 1186 aa52.85■■■■■ 6.05
CBX4-203ENST00000494546 VPS8Q8N3P4 1428 aa52.84■■■■■ 6.05
CBX4-203ENST00000494546 ARHGEF12Q9NZN5 1544 aa52.84■■■■■ 6.05
CBX4-203ENST00000494546 KDM5CP41229 1560 aa52.84■■■■■ 6.05
CBX4-203ENST00000494546 TRAPPC8Q9Y2L5 1435 aa52.81■■■■■ 6.04
CBX4-203ENST00000494546 ATP10AO60312 1499 aa52.8■■■■■ 6.04
CBX4-203ENST00000494546 ITSN2Q9NZM3 1697 aa52.78■■■■■ 6.04
CBX4-203ENST00000494546 CFDP1Q9UEE9 299 aaPredicted RBP52.78■■■■■ 6.04
CBX4-203ENST00000494546 SIGLEC1Q9BZZ2 1709 aa52.77■■■■■ 6.04
CBX4-203ENST00000494546 MADDQ8WXG6 1647 aa52.74■■■■■ 6.03
CBX4-203ENST00000494546 SAMD9LQ8IVG5 1584 aa52.74■■■■■ 6.03
CBX4-203ENST00000494546 C9orf84Q5VXU9 1444 aa52.74■■■■■ 6.03
CBX4-203ENST00000494546 HECW2Q9P2P5 1572 aa52.73■■■■■ 6.03
CBX4-203ENST00000494546 PTPRMP28827 1452 aa52.73■■■■■ 6.03
CBX4-203ENST00000494546 MLECQ14165 292 aa52.68■■■■■ 6.02
CBX4-203ENST00000494546 TIAM1Q13009 1591 aa52.68■■■■■ 6.02
CBX4-203ENST00000494546 MLH3Q9UHC1 1453 aa52.67■■■■■ 6.02
CBX4-203ENST00000494546 SYCP2Q9BX26 1530 aa52.65■■■■■ 6.02
CBX4-203ENST00000494546 HNRNPMP52272 730 aaKnown RBP eCLIP52.64■■■■■ 6.02
CBX4-203ENST00000494546 DIP2CQ9Y2E4 1556 aa52.6■■■■■ 6.01
CBX4-203ENST00000494546 PLEKHH2Q8IVE3 1493 aa52.59■■■■■ 6.01
CBX4-203ENST00000494546 RIMS1Q86UR5 1692 aaKnown RBP52.57■■■■■ 6.01
CBX4-203ENST00000494546 KIAA1107Q9UPP5 1409 aa52.57■■■■■ 6.01
CBX4-203ENST00000494546 ABCA6Q8N139 1617 aa52.56■■■■■ 6
CBX4-203ENST00000494546 NCOA2Q15596 1464 aa52.56■■■■■ 6
CBX4-203ENST00000494546 SUPT6HQ7KZ85 1726 aaKnown RBP52.54■■■■■ 6
CBX4-203ENST00000494546 ZNF644Q9H582 1327 aaPredicted RBP52.5■■■■■ 6
CBX4-203ENST00000494546 KIDINS220Q9ULH0 1771 aa52.49■■■■■ 5.99
CBX4-203ENST00000494546 LRRC9Q6ZRR7 1453 aa52.49■■■■■ 5.99
CBX4-203ENST00000494546 SPAG9O60271 1321 aaKnown RBP52.48■■■■■ 5.99
CBX4-203ENST00000494546 REREQ9P2R6 1566 aa52.45■■■■■ 5.99
CBX4-203ENST00000494546 PLPPR3Q6T4P5 718 aa52.44■■■■■ 5.99
CBX4-203ENST00000494546 FER1L4A9Z1Z3 1794 aa52.41■■■■■ 5.98
CBX4-203ENST00000494546 MAP3K1Q13233 1512 aa52.4■■■■■ 5.98
CBX4-203ENST00000494546 KANK4Q5T7N3 995 aaPredicted RBP52.39■■■■■ 5.98
CBX4-203ENST00000494546 ATP7AQ04656 1500 aa52.32■■■■■ 5.97
CBX4-203ENST00000494546 MBD5Q9P267 1494 aa52.31■■■■■ 5.96
CBX4-203ENST00000494546 AGLP35573 1532 aa52.3■■■■■ 5.96
CBX4-203ENST00000494546 APLP2Q06481 763 aa52.29■■■■■ 5.96
CBX4-203ENST00000494546 INO80Q9ULG1 1556 aaPredicted RBP52.28■■■■■ 5.96
CBX4-203ENST00000494546 CAMSAP2Q08AD1 1489 aa52.25■■■■■ 5.96
CBX4-203ENST00000494546 A2MP01023 1474 aa52.13■■■■■ 5.94
CBX4-203ENST00000494546 CEBPAP49715 358 aaPredicted RBP52.13■■■■■ 5.94
CBX4-203ENST00000494546 ESF1Q9H501 851 aaKnown RBP52.13■■■■■ 5.94
CBX4-203ENST00000494546 CCDC141Q6ZP82 1450 aa52.12■■■■■ 5.93
CBX4-203ENST00000494546 LMTK3Q96Q04 1460 aa52.1■■■■■ 5.93
CBX4-203ENST00000494546 RSPH4AQ5TD94 716 aa52.09■■■■■ 5.93
CBX4-203ENST00000494546 RTEL1-TNFRSF6BF6WH68 1400 aa52.08■■■■■ 5.93
CBX4-203ENST00000494546 MYOM3Q5VTT5 1437 aa52.06■■■■■ 5.92
CBX4-203ENST00000494546 PLXNC1O60486 1568 aa52.04■■■■■ 5.92
CBX4-203ENST00000494546 ADGBQ8N7X0 1667 aa52.01■■■■■ 5.92
CBX4-203ENST00000494546 ARHGEF5Q12774 1597 aa51.99■■■■■ 5.91
CBX4-203ENST00000494546 MIA2Q96PC5 1412 aa51.98■■■■■ 5.91
CBX4-203ENST00000494546 TSPY4P0CV99 314 aa51.94■■■■■ 5.91
CBX4-203ENST00000494546 TSPY10P0CW01 314 aa51.94■■■■■ 5.91
CBX4-203ENST00000494546 CNTLNQ9NXG0 1405 aa51.94■■■■■ 5.91
CBX4-203ENST00000494546 HSPA2P54652 639 aa51.92■■■■■ 5.9
CBX4-203ENST00000494546 GGT6Q6P531 493 aa51.9■■■■■ 5.9
CBX4-203ENST00000494546 DHX29Q7Z478 1369 aaKnown RBP51.89■■■■■ 5.9
CBX4-203ENST00000494546 C3P01024 1663 aa51.88■■■■■ 5.9
CBX4-203ENST00000494546 PREX1Q8TCU6 1659 aa51.81■■■■■ 5.89
CBX4-203ENST00000494546 ZMYM3Q14202 1370 aa51.75■■■■■ 5.88
CBX4-203ENST00000494546 KIF3BO15066 747 aa51.74■■■■■ 5.87
CBX4-203ENST00000494546 MROH2AA6NES4 1674 aa51.74■■■■■ 5.87
CBX4-203ENST00000494546 UHRF1BP1Q6BDS2 1440 aa51.73■■■■■ 5.87
CBX4-203ENST00000494546 CLTCQ00610 1675 aaKnown RBP51.73■■■■■ 5.87
CBX4-203ENST00000494546 PTPN23Q9H3S7 1636 aa51.71■■■■■ 5.87
CBX4-203ENST00000494546 MAST1Q9Y2H9 1570 aa51.71■■■■■ 5.87
CBX4-203ENST00000494546 PPP6R1Q9UPN7 881 aa51.71■■■■■ 5.87
CBX4-203ENST00000494546 SETD1BQ9UPS6 1966 aaKnown RBP51.69■■■■■ 5.87
CBX4-203ENST00000494546 FGD6Q6ZV73 1430 aa51.69■■■■■ 5.87
CBX4-203ENST00000494546 NPATQ14207 1427 aa51.59■■■■■ 5.85
CBX4-203ENST00000494546 ABCC5O15440 1437 aa51.57■■■■■ 5.85
CBX4-203ENST00000494546 TCOF1Q13428 1488 aaKnown RBP51.57■■■■■ 5.85
CBX4-203ENST00000494546 DAPK1P53355 1430 aa51.5■■■■■ 5.84
CBX4-203ENST00000494546 SHANK2Q9UPX8 1470 aa51.49■■■■■ 5.83
CBX4-203ENST00000494546 PTPRKQ15262 1439 aa51.48■■■■■ 5.83
CBX4-203ENST00000494546 CROCC2H7BZ55 1655 aa51.48■■■■■ 5.83
CBX4-203ENST00000494546 WASHC2CQ9Y4E1 1318 aa51.47■■■■■ 5.83
CBX4-203ENST00000494546 DNMT1P26358 1616 aaKnown RBP51.46■■■■■ 5.83
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms