RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 GPATCH8Q9UKJ3 1502 aaKnown RBP22.55■■□□□ 1.2
BRCA1-223ENST00000494123 CFAP74Q9C0B2 1584 aa22.55■■□□□ 1.2
BRCA1-223ENST00000494123 FANCAO15360 1455 aa22.54■■□□□ 1.2
BRCA1-223ENST00000494123 EFCAB2Q5VUJ9 269 aa22.52■■□□□ 1.2
BRCA1-223ENST00000494123 CFDP1Q9UEE9 299 aaPredicted RBP22.51■■□□□ 1.19
BRCA1-223ENST00000494123 NEO1Q92859 1461 aa22.5■■□□□ 1.19
BRCA1-223ENST00000494123 MYOM3Q5VTT5 1437 aa22.49■■□□□ 1.19
BRCA1-223ENST00000494123 PHLDB1Q86UU1 1377 aa22.48■■□□□ 1.19
BRCA1-223ENST00000494123 ZNF777Q9ULD5 760 aaPredicted RBP22.48■■□□□ 1.19
BRCA1-223ENST00000494123 AKNAQ7Z591 1439 aa22.46■■□□□ 1.19
BRCA1-223ENST00000494123 ADGRL1O94910 1474 aa22.44■■□□□ 1.18
BRCA1-223ENST00000494123 MIA2Q96PC5 1412 aa22.42■■□□□ 1.18
BRCA1-223ENST00000494123 SAMD9LQ8IVG5 1584 aa22.42■■□□□ 1.18
BRCA1-223ENST00000494123 KDM6BO15054 1643 aa22.42■■□□□ 1.18
BRCA1-223ENST00000494123 FGD6Q6ZV73 1430 aa22.4■■□□□ 1.18
BRCA1-223ENST00000494123 ABCC1P33527 1531 aa22.39■■□□□ 1.17
BRCA1-223ENST00000494123 CAMSAP2Q08AD1 1489 aa22.39■■□□□ 1.17
BRCA1-223ENST00000494123 PLEKHH2Q8IVE3 1493 aa22.39■■□□□ 1.17
BRCA1-223ENST00000494123 SCAPERQ9BY12 1400 aa22.38■■□□□ 1.17
BRCA1-223ENST00000494123 PTPN23Q9H3S7 1636 aa22.37■■□□□ 1.17
BRCA1-223ENST00000494123 ZNF644Q9H582 1327 aaPredicted RBP22.37■■□□□ 1.17
BRCA1-223ENST00000494123 DENND4BO75064 1496 aaPredicted RBP22.36■■□□□ 1.17
BRCA1-223ENST00000494123 SYCP2Q9BX26 1530 aa22.36■■□□□ 1.17
BRCA1-223ENST00000494123 KIAA1107Q9UPP5 1409 aa22.34■■□□□ 1.17
BRCA1-223ENST00000494123 COL17A1Q9UMD9 1497 aaPredicted RBP22.33■■□□□ 1.17
BRCA1-223ENST00000494123 ARHGEF12Q9NZN5 1544 aa22.32■■□□□ 1.16
BRCA1-223ENST00000494123 HNRNPMP52272 730 aaKnown RBP eCLIP22.32■■□□□ 1.16
BRCA1-223ENST00000494123 POGZQ7Z3K3 1410 aa22.32■■□□□ 1.16
BRCA1-223ENST00000494123 RAPGEF3O95398 923 aa22.31■■□□□ 1.16
BRCA1-223ENST00000494123 RICTORQ6R327 1708 aa22.31■■□□□ 1.16
BRCA1-223ENST00000494123 TCOF1Q13428 1488 aaKnown RBP22.31■■□□□ 1.16
BRCA1-223ENST00000494123 ZNF518AQ6AHZ1 1483 aa22.3■■□□□ 1.16
BRCA1-223ENST00000494123 FAM50AQ14320 339 aaKnown RBP22.3■■□□□ 1.16
BRCA1-223ENST00000494123 FRMPD1Q5SYB0 1578 aa22.29■■□□□ 1.16
BRCA1-223ENST00000494123 TRAPPC8Q9Y2L5 1435 aa22.28■■□□□ 1.16
BRCA1-223ENST00000494123 MBD5Q9P267 1494 aa22.27■■□□□ 1.16
BRCA1-223ENST00000494123 ARHGEF5Q12774 1597 aa22.26■■□□□ 1.15
BRCA1-223ENST00000494123 AFAP1Q8N556 730 aa22.26■■□□□ 1.15
BRCA1-223ENST00000494123 RRBP1Q9P2E9 1410 aaKnown RBP22.25■■□□□ 1.15
BRCA1-223ENST00000494123 CCDC141Q6ZP82 1450 aa22.25■■□□□ 1.15
BRCA1-223ENST00000494123 RSPH4AQ5TD94 716 aa22.25■■□□□ 1.15
BRCA1-223ENST00000494123 KDM5CP41229 1560 aa22.24■■□□□ 1.15
BRCA1-223ENST00000494123 MYT1LQ9UL68 1186 aa22.24■■□□□ 1.15
BRCA1-223ENST00000494123 ZMYM4Q5VZL5 1548 aa22.22■■□□□ 1.15
BRCA1-223ENST00000494123 DNMT1P26358 1616 aaKnown RBP22.21■■□□□ 1.15
BRCA1-223ENST00000494123 HECW2Q9P2P5 1572 aa22.21■■□□□ 1.15
BRCA1-223ENST00000494123 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.2■■□□□ 1.14
BRCA1-223ENST00000494123 SPAG9O60271 1321 aaKnown RBP22.2■■□□□ 1.14
BRCA1-223ENST00000494123 TSPY4P0CV99 314 aa22.2■■□□□ 1.14
BRCA1-223ENST00000494123 TSPY10P0CW01 314 aa22.2■■□□□ 1.14
BRCA1-223ENST00000494123 DAPK1P53355 1430 aa22.18■■□□□ 1.14
BRCA1-223ENST00000494123 CROCC2H7BZ55 1655 aa22.18■■□□□ 1.14
BRCA1-223ENST00000494123 MAGI2Q86UL8 1455 aa22.18■■□□□ 1.14
BRCA1-223ENST00000494123 ABCC5O15440 1437 aa22.17■■□□□ 1.14
BRCA1-223ENST00000494123 ZFYVE16Q7Z3T8 1539 aa22.17■■□□□ 1.14
BRCA1-223ENST00000494123 MLH3Q9UHC1 1453 aa22.16■■□□□ 1.14
BRCA1-223ENST00000494123 INO80Q9ULG1 1556 aaPredicted RBP22.15■■□□□ 1.14
BRCA1-223ENST00000494123 ATP7AQ04656 1500 aa22.15■■□□□ 1.14
BRCA1-223ENST00000494123 ITGAEP38570 1179 aa22.14■■□□□ 1.14
BRCA1-223ENST00000494123 KIDINS220Q9ULH0 1771 aa22.14■■□□□ 1.13
BRCA1-223ENST00000494123 SHANK2Q9UPX8 1470 aa22.14■■□□□ 1.13
BRCA1-223ENST00000494123 C9orf84Q5VXU9 1444 aa22.13■■□□□ 1.13
BRCA1-223ENST00000494123 MAST1Q9Y2H9 1570 aa22.13■■□□□ 1.13
BRCA1-223ENST00000494123 ARHGEF40Q8TER5 1519 aa22.13■■□□□ 1.13
BRCA1-223ENST00000494123 RTEL1-TNFRSF6BF6WH68 1400 aa22.12■■□□□ 1.13
BRCA1-223ENST00000494123 YEATS2Q9ULM3 1422 aa22.12■■□□□ 1.13
BRCA1-223ENST00000494123 CHIC2Q9UKJ5 165 aa22.09■■□□□ 1.13
BRCA1-223ENST00000494123 ABCA6Q8N139 1617 aa22.09■■□□□ 1.13
BRCA1-223ENST00000494123 ADGBQ8N7X0 1667 aa22.09■■□□□ 1.13
BRCA1-223ENST00000494123 DIP2CQ9Y2E4 1556 aa22.08■■□□□ 1.13
BRCA1-223ENST00000494123 ATP10AO60312 1499 aa22.06■■□□□ 1.12
BRCA1-223ENST00000494123 PLXNC1O60486 1568 aa22.05■■□□□ 1.12
BRCA1-223ENST00000494123 PTPRKQ15262 1439 aa22.05■■□□□ 1.12
BRCA1-223ENST00000494123 ANKRD30AQ9BXX3 1397 aa22.04■■□□□ 1.12
BRCA1-223ENST00000494123 ADGRL2O95490 1459 aa22.02■■□□□ 1.12
BRCA1-223ENST00000494123 A2MP01023 1474 aa22■■□□□ 1.11
BRCA1-223ENST00000494123 KIF15Q9NS87 1388 aa22■■□□□ 1.11
BRCA1-223ENST00000494123 RRP7BPQ9NSQ0 103 aa22■■□□□ 1.11
BRCA1-223ENST00000494123 REREQ9P2R6 1566 aa22■■□□□ 1.11
BRCA1-223ENST00000494123 NCOA1Q15788 1441 aa21.99■■□□□ 1.11
BRCA1-223ENST00000494123 ROCK1Q13464 1354 aa21.99■■□□□ 1.11
BRCA1-223ENST00000494123 ARID4BQ4LE39 1312 aaPredicted RBP21.98■■□□□ 1.11
BRCA1-223ENST00000494123 DUOX2Q9NRD8 1548 aa21.98■■□□□ 1.11
BRCA1-223ENST00000494123 DHX29Q7Z478 1369 aaKnown RBP21.96■■□□□ 1.11
BRCA1-223ENST00000494123 SIGLEC1Q9BZZ2 1709 aa21.94■■□□□ 1.1
BRCA1-223ENST00000494123 TRIM26Q12899 539 aaPredicted RBP21.94■■□□□ 1.1
BRCA1-223ENST00000494123 AGLP35573 1532 aa21.92■■□□□ 1.1
BRCA1-223ENST00000494123 ERBINQ96RT1 1412 aa21.91■■□□□ 1.1
BRCA1-223ENST00000494123 EIF2AK4Q9P2K8 1649 aaKnown RBP21.9■■□□□ 1.1
BRCA1-223ENST00000494123 GCC2Q8IWJ2 1684 aa21.9■■□□□ 1.1
BRCA1-223ENST00000494123 ANKRD50Q9ULJ7 1429 aa21.89■■□□□ 1.09
BRCA1-223ENST00000494123 HFM1A2PYH4 1435 aa21.88■■□□□ 1.09
BRCA1-223ENST00000494123 KIF3BO15066 747 aa21.88■■□□□ 1.09
BRCA1-223ENST00000494123 MLECQ14165 292 aa21.88■■□□□ 1.09
BRCA1-223ENST00000494123 BCORL1Q5H9F3 1711 aa21.86■■□□□ 1.09
BRCA1-223ENST00000494123 NAIPQ13075 1403 aa21.85■■□□□ 1.09
BRCA1-223ENST00000494123 GGT6Q6P531 493 aa21.84■■□□□ 1.09
BRCA1-223ENST00000494123 RNF17Q9BXT8 1623 aaKnown RBP21.81■■□□□ 1.08
BRCA1-223ENST00000494123 ESF1Q9H501 851 aaKnown RBP21.78■■□□□ 1.08
BRCA1-223ENST00000494123 SETD5Q9C0A6 1442 aa21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms