RNA–Protein interactions for RNA: ENST00000493916.1

SNIP1-203, Transcript of Smad nuclear interacting protein 1, humanhuman

TSL 4

Gene SNIP1, Length 546 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-203ENST00000493916 ZMYM4Q5VZL5 1548 aa36.15■■■■□ 3.38
SNIP1-203ENST00000493916 CDC42BPBQ9Y5S2 1711 aa36.14■■■■□ 3.38
SNIP1-203ENST00000493916 POGZQ7Z3K3 1410 aa36.14■■■■□ 3.38
SNIP1-203ENST00000493916 VPS8Q8N3P4 1428 aa36.14■■■■□ 3.38
SNIP1-203ENST00000493916 SCAPERQ9BY12 1400 aa36.14■■■■□ 3.38
SNIP1-203ENST00000493916 ARHGEF40Q8TER5 1519 aa36.11■■■■□ 3.37
SNIP1-203ENST00000493916 CDC42BPAQ5VT25 1732 aa36.1■■■■□ 3.37
SNIP1-203ENST00000493916 MTUS2Q5JR59 1369 aa36.1■■■■□ 3.37
SNIP1-203ENST00000493916 EHBP1L1Q8N3D4 1523 aa36.08■■■■□ 3.37
SNIP1-203ENST00000493916 MAGI2Q86UL8 1455 aa36.05■■■■□ 3.36
SNIP1-203ENST00000493916 GPATCH8Q9UKJ3 1502 aaKnown RBP36.02■■■■□ 3.36
SNIP1-203ENST00000493916 ABCC1P33527 1531 aa36.01■■■■□ 3.36
SNIP1-203ENST00000493916 ZFYVE16Q7Z3T8 1539 aa36.01■■■■□ 3.36
SNIP1-203ENST00000493916 TIAM1Q13009 1591 aa36.01■■■■□ 3.35
SNIP1-203ENST00000493916 ZNF518AQ6AHZ1 1483 aa36■■■■□ 3.35
SNIP1-203ENST00000493916 KDM5CP41229 1560 aa35.97■■■■□ 3.35
SNIP1-203ENST00000493916 YEATS2Q9ULM3 1422 aa35.94■■■■□ 3.34
SNIP1-203ENST00000493916 CCNB3Q8WWL7 1395 aa35.94■■■■□ 3.34
SNIP1-203ENST00000493916 ITSN2Q9NZM3 1697 aa35.94■■■■□ 3.34
SNIP1-203ENST00000493916 ARHGEF12Q9NZN5 1544 aa35.92■■■■□ 3.34
SNIP1-203ENST00000493916 SAMD9LQ8IVG5 1584 aa35.91■■■■□ 3.34
SNIP1-203ENST00000493916 MAP3K1Q13233 1512 aa35.91■■■■□ 3.34
SNIP1-203ENST00000493916 SUPT6HQ7KZ85 1726 aaKnown RBP35.87■■■■□ 3.33
SNIP1-203ENST00000493916 HECW2Q9P2P5 1572 aa35.86■■■■□ 3.33
SNIP1-203ENST00000493916 AFAP1Q8N556 730 aa35.86■■■■□ 3.33
SNIP1-203ENST00000493916 TRAPPC8Q9Y2L5 1435 aa35.85■■■■□ 3.33
SNIP1-203ENST00000493916 BCORL1Q5H9F3 1711 aa35.84■■■■□ 3.33
SNIP1-203ENST00000493916 CFDP1Q9UEE9 299 aaPredicted RBP35.84■■■■□ 3.33
SNIP1-203ENST00000493916 LRRC9Q6ZRR7 1453 aa35.84■■■■□ 3.33
SNIP1-203ENST00000493916 ADAMTSL3P82987 1691 aa35.84■■■■□ 3.33
SNIP1-203ENST00000493916 PLEKHH2Q8IVE3 1493 aa35.83■■■■□ 3.33
SNIP1-203ENST00000493916 NCOA2Q15596 1464 aa35.82■■■■□ 3.32
SNIP1-203ENST00000493916 MLH3Q9UHC1 1453 aa35.82■■■■□ 3.32
SNIP1-203ENST00000493916 SYCP2Q9BX26 1530 aa35.82■■■■□ 3.32
SNIP1-203ENST00000493916 KIAA1107Q9UPP5 1409 aa35.81■■■■□ 3.32
SNIP1-203ENST00000493916 ATP10AO60312 1499 aa35.8■■■■□ 3.32
SNIP1-203ENST00000493916 SIGLEC1Q9BZZ2 1709 aa35.8■■■■□ 3.32
SNIP1-203ENST00000493916 ZNF777Q9ULD5 760 aaPredicted RBP35.8■■■■□ 3.32
SNIP1-203ENST00000493916 ARID4BQ4LE39 1312 aaPredicted RBP35.8■■■■□ 3.32
SNIP1-203ENST00000493916 C9orf84Q5VXU9 1444 aa35.79■■■■□ 3.32
SNIP1-203ENST00000493916 DIP2CQ9Y2E4 1556 aa35.75■■■■□ 3.31
SNIP1-203ENST00000493916 ABCA6Q8N139 1617 aa35.72■■■■□ 3.31
SNIP1-203ENST00000493916 REREQ9P2R6 1566 aa35.72■■■■□ 3.31
SNIP1-203ENST00000493916 MADDQ8WXG6 1647 aa35.7■■■■□ 3.31
SNIP1-203ENST00000493916 KIDINS220Q9ULH0 1771 aa35.69■■■■□ 3.3
SNIP1-203ENST00000493916 HNRNPMP52272 730 aaKnown RBP eCLIP35.68■■■■□ 3.3
SNIP1-203ENST00000493916 KANK4Q5T7N3 995 aaPredicted RBP35.67■■■■□ 3.3
SNIP1-203ENST00000493916 MYT1LQ9UL68 1186 aa35.66■■■■□ 3.3
SNIP1-203ENST00000493916 PTPRMP28827 1452 aa35.65■■■■□ 3.3
SNIP1-203ENST00000493916 ZNF644Q9H582 1327 aaPredicted RBP35.63■■■■□ 3.29
SNIP1-203ENST00000493916 MBD5Q9P267 1494 aa35.63■■■■□ 3.29
SNIP1-203ENST00000493916 INO80Q9ULG1 1556 aaPredicted RBP35.62■■■■□ 3.29
SNIP1-203ENST00000493916 CAMSAP2Q08AD1 1489 aa35.6■■■■□ 3.29
SNIP1-203ENST00000493916 SPAG9O60271 1321 aaKnown RBP35.6■■■■□ 3.29
SNIP1-203ENST00000493916 APLP2Q06481 763 aa35.6■■■■□ 3.29
SNIP1-203ENST00000493916 ATP7AQ04656 1500 aa35.59■■■■□ 3.29
SNIP1-203ENST00000493916 AGLP35573 1532 aa35.57■■■■□ 3.29
SNIP1-203ENST00000493916 RIMS1Q86UR5 1692 aaKnown RBP35.57■■■■□ 3.28
SNIP1-203ENST00000493916 FER1L4A9Z1Z3 1794 aa35.53■■■■□ 3.28
SNIP1-203ENST00000493916 MYOM3Q5VTT5 1437 aa35.52■■■■□ 3.28
SNIP1-203ENST00000493916 MLECQ14165 292 aa35.51■■■■□ 3.28
SNIP1-203ENST00000493916 CCDC141Q6ZP82 1450 aa35.5■■■■□ 3.27
SNIP1-203ENST00000493916 MIA2Q96PC5 1412 aa35.49■■■■□ 3.27
SNIP1-203ENST00000493916 ARHGEF5Q12774 1597 aa35.48■■■■□ 3.27
SNIP1-203ENST00000493916 RTEL1-TNFRSF6BF6WH68 1400 aa35.48■■■■□ 3.27
SNIP1-203ENST00000493916 RSPH4AQ5TD94 716 aa35.46■■■■□ 3.27
SNIP1-203ENST00000493916 PLXNC1O60486 1568 aa35.46■■■■□ 3.27
SNIP1-203ENST00000493916 ADGBQ8N7X0 1667 aa35.42■■■■□ 3.26
SNIP1-203ENST00000493916 A2MP01023 1474 aa35.41■■■■□ 3.26
SNIP1-203ENST00000493916 MAST1Q9Y2H9 1570 aa35.31■■■■□ 3.24
SNIP1-203ENST00000493916 PTPN23Q9H3S7 1636 aa35.3■■■■□ 3.24
SNIP1-203ENST00000493916 FGD6Q6ZV73 1430 aa35.29■■■■□ 3.24
SNIP1-203ENST00000493916 TSPY4P0CV99 314 aa35.27■■■■□ 3.24
SNIP1-203ENST00000493916 TSPY10P0CW01 314 aa35.27■■■■□ 3.24
SNIP1-203ENST00000493916 DHX29Q7Z478 1369 aaKnown RBP35.26■■■■□ 3.24
SNIP1-203ENST00000493916 CNTLNQ9NXG0 1405 aa35.26■■■■□ 3.24
SNIP1-203ENST00000493916 TCOF1Q13428 1488 aaKnown RBP35.25■■■■□ 3.23
SNIP1-203ENST00000493916 LMTK3Q96Q04 1460 aa35.22■■■■□ 3.23
SNIP1-203ENST00000493916 PLPPR3Q6T4P5 718 aa35.21■■■■□ 3.23
SNIP1-203ENST00000493916 ESF1Q9H501 851 aaKnown RBP35.21■■■■□ 3.23
SNIP1-203ENST00000493916 MROH2AA6NES4 1674 aa35.19■■■■□ 3.22
SNIP1-203ENST00000493916 C3P01024 1663 aa35.19■■■■□ 3.22
SNIP1-203ENST00000493916 CROCC2H7BZ55 1655 aa35.18■■■■□ 3.22
SNIP1-203ENST00000493916 SHANK2Q9UPX8 1470 aa35.18■■■■□ 3.22
SNIP1-203ENST00000493916 CEBPAP49715 358 aaPredicted RBP35.16■■■■□ 3.22
SNIP1-203ENST00000493916 DNMT1P26358 1616 aaKnown RBP35.15■■■■□ 3.22
SNIP1-203ENST00000493916 ABCC5O15440 1437 aa35.15■■■■□ 3.22
SNIP1-203ENST00000493916 PPP6R1Q9UPN7 881 aa35.13■■■■□ 3.21
SNIP1-203ENST00000493916 DAPK1P53355 1430 aa35.12■■■■□ 3.21
SNIP1-203ENST00000493916 PREX1Q8TCU6 1659 aa35.11■■■■□ 3.21
SNIP1-203ENST00000493916 GGT6Q6P531 493 aa35.11■■■■□ 3.21
SNIP1-203ENST00000493916 CLTCQ00610 1675 aaKnown RBP35.11■■■■□ 3.21
SNIP1-203ENST00000493916 FAM135AQ9P2D6 1515 aa35.08■■■■□ 3.21
SNIP1-203ENST00000493916 KIF3BO15066 747 aa35.06■■■■□ 3.2
SNIP1-203ENST00000493916 EIF2AK4Q9P2K8 1649 aaKnown RBP35.06■■■■□ 3.2
SNIP1-203ENST00000493916 ZMYM3Q14202 1370 aa35.05■■■■□ 3.2
SNIP1-203ENST00000493916 DUOX2Q9NRD8 1548 aa35.04■■■■□ 3.2
SNIP1-203ENST00000493916 RNF17Q9BXT8 1623 aaKnown RBP35.03■■■■□ 3.2
SNIP1-203ENST00000493916 NPATQ14207 1427 aa35.02■■■■□ 3.2
SNIP1-203ENST00000493916 KDM5DQ9BY66 1539 aa35.01■■■■□ 3.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms