RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 NEO1Q92859 1461 aa26.63■■□□□ 1.85
LIME1-208ENST00000493265 FRMPD1Q5SYB0 1578 aa26.63■■□□□ 1.85
LIME1-208ENST00000493265 NCOA2Q15596 1464 aa26.62■■□□□ 1.85
LIME1-208ENST00000493265 ADAMTSL3P82987 1691 aa26.6■■□□□ 1.85
LIME1-208ENST00000493265 CCNB3Q8WWL7 1395 aa26.57■■□□□ 1.84
LIME1-208ENST00000493265 PTPRMP28827 1452 aa26.55■■□□□ 1.84
LIME1-208ENST00000493265 BCORL1Q5H9F3 1711 aa26.54■■□□□ 1.84
LIME1-208ENST00000493265 MYO5CQ9NQX4 1742 aa26.52■■□□□ 1.84
LIME1-208ENST00000493265 MADDQ8WXG6 1647 aa26.51■■□□□ 1.83
LIME1-208ENST00000493265 ARID4BQ4LE39 1312 aaPredicted RBP26.5■■□□□ 1.83
LIME1-208ENST00000493265 CDC42BPAQ5VT25 1732 aa26.5■■□□□ 1.83
LIME1-208ENST00000493265 RICTORQ6R327 1708 aa26.5■■□□□ 1.83
LIME1-208ENST00000493265 ARHGEF40Q8TER5 1519 aa26.49■■□□□ 1.83
LIME1-208ENST00000493265 GPATCH8Q9UKJ3 1502 aaKnown RBP26.49■■□□□ 1.83
LIME1-208ENST00000493265 CFAP74Q9C0B2 1584 aa26.48■■□□□ 1.83
LIME1-208ENST00000493265 ARHGAP5Q13017 1502 aa26.47■■□□□ 1.83
LIME1-208ENST00000493265 DENND4BO75064 1496 aaPredicted RBP26.47■■□□□ 1.83
LIME1-208ENST00000493265 PLCH2O75038 1416 aa26.47■■□□□ 1.83
LIME1-208ENST00000493265 PREX2Q70Z35 1606 aa26.47■■□□□ 1.83
LIME1-208ENST00000493265 CFDP1Q9UEE9 299 aaPredicted RBP26.46■■□□□ 1.83
LIME1-208ENST00000493265 ZNF777Q9ULD5 760 aaPredicted RBP26.46■■□□□ 1.83
LIME1-208ENST00000493265 ITSN2Q9NZM3 1697 aa26.46■■□□□ 1.83
LIME1-208ENST00000493265 FANCAO15360 1455 aa26.45■■□□□ 1.82
LIME1-208ENST00000493265 AKNAQ7Z591 1439 aa26.45■■□□□ 1.82
LIME1-208ENST00000493265 CDC42BPBQ9Y5S2 1711 aa26.45■■□□□ 1.82
LIME1-208ENST00000493265 MYOM3Q5VTT5 1437 aa26.44■■□□□ 1.82
LIME1-208ENST00000493265 RIMS1Q86UR5 1692 aaKnown RBP26.44■■□□□ 1.82
LIME1-208ENST00000493265 EFCAB2Q5VUJ9 269 aa26.41■■□□□ 1.82
LIME1-208ENST00000493265 ZNF644Q9H582 1327 aaPredicted RBP26.37■■□□□ 1.81
LIME1-208ENST00000493265 ZMYM4Q5VZL5 1548 aa26.36■■□□□ 1.81
LIME1-208ENST00000493265 FGD6Q6ZV73 1430 aa26.36■■□□□ 1.81
LIME1-208ENST00000493265 SIGLEC1Q9BZZ2 1709 aa26.35■■□□□ 1.81
LIME1-208ENST00000493265 ZFYVE16Q7Z3T8 1539 aa26.34■■□□□ 1.81
LIME1-208ENST00000493265 FAM50AQ14320 339 aaKnown RBP26.33■■□□□ 1.81
LIME1-208ENST00000493265 LMTK3Q96Q04 1460 aa26.33■■□□□ 1.81
LIME1-208ENST00000493265 MIA2Q96PC5 1412 aa26.32■■□□□ 1.8
LIME1-208ENST00000493265 YEATS2Q9ULM3 1422 aa26.32■■□□□ 1.8
LIME1-208ENST00000493265 SAMD9LQ8IVG5 1584 aa26.32■■□□□ 1.8
LIME1-208ENST00000493265 PTPN23Q9H3S7 1636 aa26.32■■□□□ 1.8
LIME1-208ENST00000493265 CAMSAP2Q08AD1 1489 aa26.3■■□□□ 1.8
LIME1-208ENST00000493265 PLPPR3Q6T4P5 718 aa26.3■■□□□ 1.8
LIME1-208ENST00000493265 POGZQ7Z3K3 1410 aa26.28■■□□□ 1.8
LIME1-208ENST00000493265 SCAPERQ9BY12 1400 aa26.26■■□□□ 1.79
LIME1-208ENST00000493265 HNRNPMP52272 730 aaKnown RBP eCLIP26.26■■□□□ 1.79
LIME1-208ENST00000493265 FBXO41Q8TF61 875 aa26.26■■□□□ 1.79
LIME1-208ENST00000493265 MAGI2Q86UL8 1455 aa26.25■■□□□ 1.79
LIME1-208ENST00000493265 FER1L4A9Z1Z3 1794 aa26.25■■□□□ 1.79
LIME1-208ENST00000493265 SYCP2Q9BX26 1530 aa26.24■■□□□ 1.79
LIME1-208ENST00000493265 ABCC1P33527 1531 aa26.24■■□□□ 1.79
LIME1-208ENST00000493265 MLECQ14165 292 aa26.23■■□□□ 1.79
LIME1-208ENST00000493265 TCOF1Q13428 1488 aaKnown RBP26.22■■□□□ 1.79
LIME1-208ENST00000493265 PLEKHH2Q8IVE3 1493 aa26.22■■□□□ 1.79
LIME1-208ENST00000493265 RRBP1Q9P2E9 1410 aaKnown RBP26.22■■□□□ 1.79
LIME1-208ENST00000493265 ARHGEF12Q9NZN5 1544 aa26.21■■□□□ 1.79
LIME1-208ENST00000493265 ITGAEP38570 1179 aa26.19■■□□□ 1.78
LIME1-208ENST00000493265 HSPA2P54652 639 aa26.19■■□□□ 1.78
LIME1-208ENST00000493265 KIAA1107Q9UPP5 1409 aa26.17■■□□□ 1.78
LIME1-208ENST00000493265 TRAPPC8Q9Y2L5 1435 aa26.17■■□□□ 1.78
LIME1-208ENST00000493265 AFAP1Q8N556 730 aa26.15■■□□□ 1.78
LIME1-208ENST00000493265 MBD5Q9P267 1494 aa26.14■■□□□ 1.78
LIME1-208ENST00000493265 ATP10AO60312 1499 aa26.13■■□□□ 1.77
LIME1-208ENST00000493265 MYT1LQ9UL68 1186 aa26.13■■□□□ 1.77
LIME1-208ENST00000493265 C9orf84Q5VXU9 1444 aa26.13■■□□□ 1.77
LIME1-208ENST00000493265 ARHGEF5Q12774 1597 aa26.11■■□□□ 1.77
LIME1-208ENST00000493265 CCDC141Q6ZP82 1450 aa26.11■■□□□ 1.77
LIME1-208ENST00000493265 ZNF518AQ6AHZ1 1483 aa26.1■■□□□ 1.77
LIME1-208ENST00000493265 DAPK1P53355 1430 aa26.09■■□□□ 1.77
LIME1-208ENST00000493265 DNMT1P26358 1616 aaKnown RBP26.09■■□□□ 1.77
LIME1-208ENST00000493265 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.08■■□□□ 1.77
LIME1-208ENST00000493265 ABCC5O15440 1437 aa26.08■■□□□ 1.77
LIME1-208ENST00000493265 CHIC2Q9UKJ5 165 aa26.08■■□□□ 1.77
LIME1-208ENST00000493265 TSPY4P0CV99 314 aa26.07■■□□□ 1.76
LIME1-208ENST00000493265 TSPY10P0CW01 314 aa26.07■■□□□ 1.76
LIME1-208ENST00000493265 RSPH4AQ5TD94 716 aa26.07■■□□□ 1.76
LIME1-208ENST00000493265 KDM5CP41229 1560 aa26.06■■□□□ 1.76
LIME1-208ENST00000493265 SPAG9O60271 1321 aaKnown RBP26.06■■□□□ 1.76
LIME1-208ENST00000493265 PREX1Q8TCU6 1659 aa26.05■■□□□ 1.76
LIME1-208ENST00000493265 CROCC2H7BZ55 1655 aa26.03■■□□□ 1.76
LIME1-208ENST00000493265 TRIM26Q12899 539 aaPredicted RBP26.02■■□□□ 1.76
LIME1-208ENST00000493265 DIP2CQ9Y2E4 1556 aa26.02■■□□□ 1.76
LIME1-208ENST00000493265 PTPRKQ15262 1439 aa26.01■■□□□ 1.75
LIME1-208ENST00000493265 CEBPAP49715 358 aaPredicted RBP26■■□□□ 1.75
LIME1-208ENST00000493265 ABCA6Q8N139 1617 aa25.99■■□□□ 1.75
LIME1-208ENST00000493265 ATP7AQ04656 1500 aa25.97■■□□□ 1.75
LIME1-208ENST00000493265 SHANK2Q9UPX8 1470 aa25.97■■□□□ 1.75
LIME1-208ENST00000493265 INO80Q9ULG1 1556 aaPredicted RBP25.95■■□□□ 1.75
LIME1-208ENST00000493265 MLH3Q9UHC1 1453 aa25.94■■□□□ 1.74
LIME1-208ENST00000493265 KIDINS220Q9ULH0 1771 aa25.94■■□□□ 1.74
LIME1-208ENST00000493265 MAST1Q9Y2H9 1570 aa25.94■■□□□ 1.74
LIME1-208ENST00000493265 RRP7BPQ9NSQ0 103 aa25.93■■□□□ 1.74
LIME1-208ENST00000493265 REREQ9P2R6 1566 aa25.93■■□□□ 1.74
LIME1-208ENST00000493265 ADGBQ8N7X0 1667 aa25.92■■□□□ 1.74
LIME1-208ENST00000493265 RTEL1-TNFRSF6BF6WH68 1400 aa25.91■■□□□ 1.74
LIME1-208ENST00000493265 CERKQ8TCT0 537 aa25.91■■□□□ 1.74
LIME1-208ENST00000493265 ANKRD30AQ9BXX3 1397 aa25.91■■□□□ 1.74
LIME1-208ENST00000493265 C3P01024 1663 aa25.9■■□□□ 1.74
LIME1-208ENST00000493265 STRCQ7RTU9 1775 aa25.89■■□□□ 1.73
LIME1-208ENST00000493265 UHRF1BP1Q6BDS2 1440 aa25.88■■□□□ 1.73
LIME1-208ENST00000493265 ADGRL2O95490 1459 aa25.86■■□□□ 1.73
LIME1-208ENST00000493265 KIF15Q9NS87 1388 aa25.86■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms