RNA–Protein interactions for RNA: ENST00000491258.1

PHC3-213, Transcript of polyhomeotic homolog 3, humanhuman

TSL 1 (best)

Gene PHC3, Length 719 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHC3-213ENST00000491258 PKD2Q13563 968 aa13.72□□□□□ -0.21
PHC3-213ENST00000491258 DOK7Q18PE1 504 aa13.72□□□□□ -0.21
PHC3-213ENST00000491258 TMEM92Q6UXU6 159 aa13.71□□□□□ -0.21
PHC3-213ENST00000491258 RGL2O15211 777 aa13.7□□□□□ -0.22
PHC3-213ENST00000491258 FBXO22Q8NEZ5 403 aa13.67□□□□□ -0.22
PHC3-213ENST00000491258 HOXB1P14653 301 aaPredicted RBP13.65□□□□□ -0.22
PHC3-213ENST00000491258 MFRPQ9BY79 579 aa13.65□□□□□ -0.22
PHC3-213ENST00000491258 RIMBP2O15034 1052 aa13.64□□□□□ -0.23
PHC3-213ENST00000491258 ERBB3P21860 1342 aa13.59□□□□□ -0.23
PHC3-213ENST00000491258 ZSWIM6Q9HCJ5 1215 aa13.54□□□□□ -0.24
PHC3-213ENST00000491258 VARS2Q5ST30 1063 aaKnown RBP13.5□□□□□ -0.25
PHC3-213ENST00000491258 GPR153Q6NV75 609 aa13.49□□□□□ -0.25
PHC3-213ENST00000491258 ARSIQ5FYB1 569 aa13.47□□□□□ -0.25
PHC3-213ENST00000491258 C2orf72A6NCS6 295 aa13.46□□□□□ -0.25
PHC3-213ENST00000491258 KIF3CO14782 793 aa13.43□□□□□ -0.26
PHC3-213ENST00000491258 RNF166Q96A37 237 aaPredicted RBP13.43□□□□□ -0.26
PHC3-213ENST00000491258 PPP1R37O75864 691 aa13.42□□□□□ -0.26
PHC3-213ENST00000491258 KHSRPQ92945 711 aaKnown RBP eCLIP13.42□□□□□ -0.263e-11■■■■■ 30
PHC3-213ENST00000491258 TMC2Q8TDI7 906 aa13.41□□□□□ -0.26
PHC3-213ENST00000491258 HS6ST3Q8IZP7 471 aa13.4□□□□□ -0.26
PHC3-213ENST00000491258 CHGAP10645 457 aaKnown RBP13.37□□□□□ -0.27
PHC3-213ENST00000491258 ZNF687Q8N1G0 1237 aa13.37□□□□□ -0.27
PHC3-213ENST00000491258 MYT1LQ9UL68 1186 aa13.35□□□□□ -0.27
PHC3-213ENST00000491258 ZNF316A6NFI3 1004 aaPredicted RBP13.34□□□□□ -0.27
PHC3-213ENST00000491258 NUDT7P0C024 238 aa13.32□□□□□ -0.28
PHC3-213ENST00000491258 PCDHGA4Q9Y5G9 962 aa13.3□□□□□ -0.28
PHC3-213ENST00000491258 SLC34A2O95436 690 aa13.28□□□□□ -0.28
PHC3-213ENST00000491258 PTGER2P43116 358 aa13.26□□□□□ -0.29
PHC3-213ENST00000491258 LHX6Q9UPM6 363 aa13.24□□□□□ -0.29
PHC3-213ENST00000491258 ANKRD13DQ6ZTN6 518 aa13.23□□□□□ -0.29
PHC3-213ENST00000491258 NKX1-1Q15270 411 aaPredicted RBP13.21□□□□□ -0.29
PHC3-213ENST00000491258 PLPP6Q8IY26 295 aa13.2□□□□□ -0.3
PHC3-213ENST00000491258 FOXK1P85037 733 aa13.18□□□□□ -0.3
PHC3-213ENST00000491258 GPHNQ9NQX3 736 aaPredicted RBP13.18□□□□□ -0.3
PHC3-213ENST00000491258 LSM11P83369 360 aaKnown RBP eCLIP13.17□□□□□ -0.3
PHC3-213ENST00000491258 DNAJC5Q9H3Z4 198 aa13.17□□□□□ -0.3
PHC3-213ENST00000491258 DSG2Q14126 1118 aa13.16□□□□□ -0.3
PHC3-213ENST00000491258 RYDENQ9NUL5 291 aaKnown RBP13.16□□□□□ -0.3
PHC3-213ENST00000491258 PBX2P40425 430 aa13.14□□□□□ -0.31
PHC3-213ENST00000491258 PTCD2Q8WV60 388 aaKnown RBP13.14□□□□□ -0.31
PHC3-213ENST00000491258 AXIN2Q9Y2T1 843 aa13.14□□□□□ -0.31
PHC3-213ENST00000491258 DCAF8L2P0C7V8 631 aa13.12□□□□□ -0.31
PHC3-213ENST00000491258 POTEEQ6S8J3 1075 aa13.1□□□□□ -0.31
PHC3-213ENST00000491258 PSDA5PKW4 1024 aaPredicted RBP13.09□□□□□ -0.31
PHC3-213ENST00000491258 TBC1D12O60347 775 aa13.09□□□□□ -0.31
PHC3-213ENST00000491258 KDM4FA0A1W2PPD8 638 aa13.07□□□□□ -0.32
PHC3-213ENST00000491258 UPF1Q92900 1129 aaKnown RBP eCLIP13.04□□□□□ -0.32
PHC3-213ENST00000491258 ARHGAP33O14559 1287 aa13.03□□□□□ -0.32
PHC3-213ENST00000491258 CRISPLD2Q9H0B8 497 aa13.03□□□□□ -0.32
PHC3-213ENST00000491258 PPP1R15BQ5SWA1 713 aa13.02□□□□□ -0.33
PHC3-213ENST00000491258 PPP4R3BQ5MIZ7 849 aa13.01□□□□□ -0.33
PHC3-213ENST00000491258 GTPBP6O43824 516 aaPredicted RBP13□□□□□ -0.33
PHC3-213ENST00000491258 PDE4AP27815 886 aa12.99□□□□□ -0.33
PHC3-213ENST00000491258 OXER1Q8TDS5 423 aa12.99□□□□□ -0.33
PHC3-213ENST00000491258 NCKAP5LQ9HCH0 1330 aa12.98□□□□□ -0.33
PHC3-213ENST00000491258 PSEN2P49810 448 aa12.98□□□□□ -0.33
PHC3-213ENST00000491258 ADGRD1Q6QNK2 874 aa12.97□□□□□ -0.33
PHC3-213ENST00000491258 DMRTA1Q5VZB9 504 aa12.95□□□□□ -0.34
PHC3-213ENST00000491258 LARP6Q9BRS8 491 aaKnown RBP12.93□□□□□ -0.34
PHC3-213ENST00000491258 KCNK17Q96T54 332 aa12.92□□□□□ -0.34
PHC3-213ENST00000491258 ZNF454Q8N9F8 522 aa12.91□□□□□ -0.34
PHC3-213ENST00000491258 KCNH8Q96L42 1107 aa12.91□□□□□ -0.34
PHC3-213ENST00000491258 PLA2G2EQ9NZK7 142 aa12.91□□□□□ -0.34
PHC3-213ENST00000491258 TK2O00142 265 aa12.9□□□□□ -0.34
PHC3-213ENST00000491258 DDX27Q96GQ7 796 aaKnown RBP12.9□□□□□ -0.34
PHC3-213ENST00000491258 HCSTQ9UBK5 93 aa12.89□□□□□ -0.35
PHC3-213ENST00000491258 STAC3Q96MF2 364 aa12.86□□□□□ -0.35
PHC3-213ENST00000491258 HRO43593 1189 aa12.85□□□□□ -0.35
PHC3-213ENST00000491258 EVI5O60447 810 aa12.84□□□□□ -0.35
PHC3-213ENST00000491258 MFSD10Q14728 455 aa12.83□□□□□ -0.36
PHC3-213ENST00000491258 FOSBP53539 338 aa12.82□□□□□ -0.36
PHC3-213ENST00000491258 MAP3K9P80192 1104 aa12.82□□□□□ -0.36
PHC3-213ENST00000491258 BCL2L12Q9HB09 334 aa12.81□□□□□ -0.36
PHC3-213ENST00000491258 CADPS2Q86UW7 1296 aa12.8□□□□□ -0.36
PHC3-213ENST00000491258 KCTD12Q96CX2 325 aaKnown RBP12.79□□□□□ -0.36
PHC3-213ENST00000491258 ANO8Q9HCE9 1232 aaPredicted RBP12.79□□□□□ -0.36
PHC3-213ENST00000491258 PTPREP23469 700 aa12.78□□□□□ -0.36
PHC3-213ENST00000491258 JPH4Q96JJ6 628 aa12.78□□□□□ -0.36
PHC3-213ENST00000491258 VPS9D1Q9Y2B5 631 aa12.78□□□□□ -0.36
PHC3-213ENST00000491258 EMILIN3Q9NT22 766 aa12.77□□□□□ -0.37
PHC3-213ENST00000491258 ZDHHC16Q969W1 377 aa12.75□□□□□ -0.37
PHC3-213ENST00000491258 ADAM33Q9BZ11 813 aa12.73□□□□□ -0.37
PHC3-213ENST00000491258 SLC4A5Q9BY07 1137 aa12.71□□□□□ -0.37
PHC3-213ENST00000491258 ZBED2Q9BTP6 218 aa12.7□□□□□ -0.38
PHC3-213ENST00000491258 BBXQ8WY36 941 aaPredicted RBP12.69□□□□□ -0.38
PHC3-213ENST00000491258 GOLGA8CPA6NN73 597 aa12.66□□□□□ -0.38
PHC3-213ENST00000491258 PTPN5P54829 565 aa12.66□□□□□ -0.38
PHC3-213ENST00000491258 PCDHGA10Q9Y5H3 936 aa12.66□□□□□ -0.38
PHC3-213ENST00000491258 MRPL50Q8N5N7 158 aaKnown RBP12.64□□□□□ -0.39
PHC3-213ENST00000491258 BHMG1C9JSJ3 638 aaPredicted RBP12.63□□□□□ -0.39
PHC3-213ENST00000491258 DPYSL4O14531 572 aa12.62□□□□□ -0.39
PHC3-213ENST00000491258 CAMK2BQ13554 666 aa12.62□□□□□ -0.39
PHC3-213ENST00000491258 TYW1BQ6NUM6 668 aa12.62□□□□□ -0.39
PHC3-213ENST00000491258 PPP1R3GB7ZBB8 358 aa12.61□□□□□ -0.39
PHC3-213ENST00000491258 PHF14O94880 888 aa12.61□□□□□ -0.39
PHC3-213ENST00000491258 NBPF3Q9H094 633 aa12.61□□□□□ -0.39
PHC3-213ENST00000491258 WNT2BQ93097 391 aa12.6□□□□□ -0.39
PHC3-213ENST00000491258 FBXW7Q969H0 707 aa12.6□□□□□ -0.39
PHC3-213ENST00000491258 COL9A1P20849 921 aa12.58□□□□□ -0.4
PHC3-213ENST00000491258 THSD4Q6ZMP0 1018 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms