RNA–Protein interactions for RNA: ENST00000490348.1

SRGAP3-208, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 2

Gene SRGAP3, Length 1,554 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-208ENST00000490348 ARHGAP5Q13017 1502 aa22.63■■□□□ 1.21
SRGAP3-208ENST00000490348 NCOA2Q15596 1464 aa22.62■■□□□ 1.21
SRGAP3-208ENST00000490348 CFAP74Q9C0B2 1584 aa22.62■■□□□ 1.21
SRGAP3-208ENST00000490348 SUPT6HQ7KZ85 1726 aaKnown RBP22.61■■□□□ 1.21
SRGAP3-208ENST00000490348 EFCAB2Q5VUJ9 269 aa22.6■■□□□ 1.21
SRGAP3-208ENST00000490348 CCNB3Q8WWL7 1395 aa22.59■■□□□ 1.21
SRGAP3-208ENST00000490348 APLP2Q06481 763 aa22.59■■□□□ 1.21
SRGAP3-208ENST00000490348 RAPGEF3O95398 923 aa22.58■■□□□ 1.2
SRGAP3-208ENST00000490348 ADGRL1O94910 1474 aa22.57■■□□□ 1.2
SRGAP3-208ENST00000490348 FRMPD1Q5SYB0 1578 aa22.57■■□□□ 1.2
SRGAP3-208ENST00000490348 SCAPERQ9BY12 1400 aa22.54■■□□□ 1.2
SRGAP3-208ENST00000490348 DENND4BO75064 1496 aaPredicted RBP22.54■■□□□ 1.2
SRGAP3-208ENST00000490348 ARHGEF12Q9NZN5 1544 aa22.52■■□□□ 1.2
SRGAP3-208ENST00000490348 SAMD9LQ8IVG5 1584 aa22.52■■□□□ 1.2
SRGAP3-208ENST00000490348 RICTORQ6R327 1708 aa22.52■■□□□ 1.2
SRGAP3-208ENST00000490348 CFDP1Q9UEE9 299 aaPredicted RBP22.52■■□□□ 1.2
SRGAP3-208ENST00000490348 ABCC1P33527 1531 aa22.51■■□□□ 1.19
SRGAP3-208ENST00000490348 POGZQ7Z3K3 1410 aa22.5■■□□□ 1.19
SRGAP3-208ENST00000490348 ITSN2Q9NZM3 1697 aa22.5■■□□□ 1.19
SRGAP3-208ENST00000490348 ZNF777Q9ULD5 760 aaPredicted RBP22.5■■□□□ 1.19
SRGAP3-208ENST00000490348 ZNF644Q9H582 1327 aaPredicted RBP22.48■■□□□ 1.19
SRGAP3-208ENST00000490348 TRAPPC8Q9Y2L5 1435 aa22.45■■□□□ 1.19
SRGAP3-208ENST00000490348 SYCP2Q9BX26 1530 aa22.45■■□□□ 1.18
SRGAP3-208ENST00000490348 AFAP1Q8N556 730 aa22.45■■□□□ 1.18
SRGAP3-208ENST00000490348 ZMYM4Q5VZL5 1548 aa22.44■■□□□ 1.18
SRGAP3-208ENST00000490348 MYOM3Q5VTT5 1437 aa22.44■■□□□ 1.18
SRGAP3-208ENST00000490348 KIAA1107Q9UPP5 1409 aa22.43■■□□□ 1.18
SRGAP3-208ENST00000490348 ZNF518AQ6AHZ1 1483 aa22.43■■□□□ 1.18
SRGAP3-208ENST00000490348 KDM5CP41229 1560 aa22.42■■□□□ 1.18
SRGAP3-208ENST00000490348 HNRNPMP52272 730 aaKnown RBP eCLIP22.42■■□□□ 1.18
SRGAP3-208ENST00000490348 PPARGC1BQ86YN6 1023 aaKnown RBP22.41■■□□□ 1.18
SRGAP3-208ENST00000490348 CAMSAP2Q08AD1 1489 aa22.41■■□□□ 1.18
SRGAP3-208ENST00000490348 PLEKHH2Q8IVE3 1493 aa22.4■■□□□ 1.18
SRGAP3-208ENST00000490348 MBD5Q9P267 1494 aa22.4■■□□□ 1.18
SRGAP3-208ENST00000490348 MIA2Q96PC5 1412 aa22.38■■□□□ 1.17
SRGAP3-208ENST00000490348 YEATS2Q9ULM3 1422 aa22.38■■□□□ 1.17
SRGAP3-208ENST00000490348 MAGI2Q86UL8 1455 aa22.36■■□□□ 1.17
SRGAP3-208ENST00000490348 ARHGEF40Q8TER5 1519 aa22.36■■□□□ 1.17
SRGAP3-208ENST00000490348 FGD6Q6ZV73 1430 aa22.35■■□□□ 1.17
SRGAP3-208ENST00000490348 ZFYVE16Q7Z3T8 1539 aa22.34■■□□□ 1.17
SRGAP3-208ENST00000490348 MLH3Q9UHC1 1453 aa22.33■■□□□ 1.17
SRGAP3-208ENST00000490348 HECW2Q9P2P5 1572 aa22.33■■□□□ 1.16
SRGAP3-208ENST00000490348 PTPN23Q9H3S7 1636 aa22.3■■□□□ 1.16
SRGAP3-208ENST00000490348 KIDINS220Q9ULH0 1771 aa22.29■■□□□ 1.16
SRGAP3-208ENST00000490348 TCOF1Q13428 1488 aaKnown RBP22.29■■□□□ 1.16
SRGAP3-208ENST00000490348 ARHGEF5Q12774 1597 aa22.28■■□□□ 1.16
SRGAP3-208ENST00000490348 CCDC141Q6ZP82 1450 aa22.28■■□□□ 1.16
SRGAP3-208ENST00000490348 SPAG9O60271 1321 aaKnown RBP22.28■■□□□ 1.16
SRGAP3-208ENST00000490348 SIGLEC1Q9BZZ2 1709 aa22.28■■□□□ 1.16
SRGAP3-208ENST00000490348 ABCA6Q8N139 1617 aa22.28■■□□□ 1.16
SRGAP3-208ENST00000490348 INO80Q9ULG1 1556 aaPredicted RBP22.27■■□□□ 1.16
SRGAP3-208ENST00000490348 DIP2CQ9Y2E4 1556 aa22.27■■□□□ 1.16
SRGAP3-208ENST00000490348 ATP7AQ04656 1500 aa22.25■■□□□ 1.15
SRGAP3-208ENST00000490348 ATP10AO60312 1499 aa22.25■■□□□ 1.15
SRGAP3-208ENST00000490348 RSPH4AQ5TD94 716 aa22.23■■□□□ 1.15
SRGAP3-208ENST00000490348 MYT1LQ9UL68 1186 aa22.23■■□□□ 1.15
SRGAP3-208ENST00000490348 C9orf84Q5VXU9 1444 aa22.21■■□□□ 1.15
SRGAP3-208ENST00000490348 KDM4FA0A1W2PPD8 638 aa22.21■■□□□ 1.15
SRGAP3-208ENST00000490348 RTEL1-TNFRSF6BF6WH68 1400 aa22.2■■□□□ 1.14
SRGAP3-208ENST00000490348 ABCC5O15440 1437 aa22.2■■□□□ 1.14
SRGAP3-208ENST00000490348 REREQ9P2R6 1566 aa22.18■■□□□ 1.14
SRGAP3-208ENST00000490348 DAPK1P53355 1430 aa22.17■■□□□ 1.14
SRGAP3-208ENST00000490348 DNMT1P26358 1616 aaKnown RBP22.17■■□□□ 1.14
SRGAP3-208ENST00000490348 FAM50AQ14320 339 aaKnown RBP22.16■■□□□ 1.14
SRGAP3-208ENST00000490348 MAST1Q9Y2H9 1570 aa22.16■■□□□ 1.14
SRGAP3-208ENST00000490348 ARID4BQ4LE39 1312 aaPredicted RBP22.15■■□□□ 1.14
SRGAP3-208ENST00000490348 TSPY4P0CV99 314 aa22.15■■□□□ 1.14
SRGAP3-208ENST00000490348 TSPY10P0CW01 314 aa22.15■■□□□ 1.14
SRGAP3-208ENST00000490348 CROCC2H7BZ55 1655 aa22.15■■□□□ 1.14
SRGAP3-208ENST00000490348 PLXNC1O60486 1568 aa22.14■■□□□ 1.13
SRGAP3-208ENST00000490348 SHANK2Q9UPX8 1470 aa22.13■■□□□ 1.13
SRGAP3-208ENST00000490348 BCORL1Q5H9F3 1711 aa22.13■■□□□ 1.13
SRGAP3-208ENST00000490348 RRBP1Q9P2E9 1410 aaKnown RBP22.12■■□□□ 1.13
SRGAP3-208ENST00000490348 A2MP01023 1474 aa22.12■■□□□ 1.13
SRGAP3-208ENST00000490348 ADGBQ8N7X0 1667 aa22.12■■□□□ 1.13
SRGAP3-208ENST00000490348 AGLP35573 1532 aa22.11■■□□□ 1.13
SRGAP3-208ENST00000490348 ADAMTSL3P82987 1691 aa22.1■■□□□ 1.13
SRGAP3-208ENST00000490348 PTPRKQ15262 1439 aa22.09■■□□□ 1.13
SRGAP3-208ENST00000490348 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.08■■□□□ 1.13
SRGAP3-208ENST00000490348 DHX29Q7Z478 1369 aaKnown RBP22.07■■□□□ 1.12
SRGAP3-208ENST00000490348 MLECQ14165 292 aa22.07■■□□□ 1.12
SRGAP3-208ENST00000490348 CHIC2Q9UKJ5 165 aa22.06■■□□□ 1.12
SRGAP3-208ENST00000490348 MADDQ8WXG6 1647 aa22.04■■□□□ 1.12
SRGAP3-208ENST00000490348 KIF15Q9NS87 1388 aa22.02■■□□□ 1.12
SRGAP3-208ENST00000490348 ADGRL2O95490 1459 aa22.02■■□□□ 1.12
SRGAP3-208ENST00000490348 NCOA1Q15788 1441 aa22.02■■□□□ 1.12
SRGAP3-208ENST00000490348 RRP7BPQ9NSQ0 103 aa22.02■■□□□ 1.12
SRGAP3-208ENST00000490348 ITGAEP38570 1179 aa21.99■■□□□ 1.11
SRGAP3-208ENST00000490348 ANKRD30AQ9BXX3 1397 aa21.99■■□□□ 1.11
SRGAP3-208ENST00000490348 DUOX2Q9NRD8 1548 aa21.98■■□□□ 1.11
SRGAP3-208ENST00000490348 FER1L4A9Z1Z3 1794 aa21.96■■□□□ 1.11
SRGAP3-208ENST00000490348 PTPRMP28827 1452 aa21.96■■□□□ 1.11
SRGAP3-208ENST00000490348 RIMS1Q86UR5 1692 aaKnown RBP21.96■■□□□ 1.11
SRGAP3-208ENST00000490348 KIF3BO15066 747 aa21.95■■□□□ 1.11
SRGAP3-208ENST00000490348 ROCK1Q13464 1354 aa21.94■■□□□ 1.1
SRGAP3-208ENST00000490348 GGT6Q6P531 493 aa21.94■■□□□ 1.1
SRGAP3-208ENST00000490348 ERBINQ96RT1 1412 aa21.93■■□□□ 1.1
SRGAP3-208ENST00000490348 EIF2AK4Q9P2K8 1649 aaKnown RBP21.93■■□□□ 1.1
SRGAP3-208ENST00000490348 RNF17Q9BXT8 1623 aaKnown RBP21.9■■□□□ 1.1
SRGAP3-208ENST00000490348 AEBP2Q6ZN18 517 aaPredicted RBP21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms