RNA–Protein interactions for RNA: ENST00000490163.5

UBXN4-208, Transcript of UBX domain protein 4, humanhuman

TSL 2

Gene UBXN4, Length 3,394 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-208ENST00000490163 PDE4AP27815 886 aa5.37□□□□□ -1.55
UBXN4-208ENST00000490163 NLRP6P59044 892 aa5.37□□□□□ -1.55
UBXN4-208ENST00000490163 KCTD17Q8N5Z5 321 aa5.36□□□□□ -1.55
UBXN4-208ENST00000490163 CHRDL2Q6WN34 429 aa5.36□□□□□ -1.55
UBXN4-208ENST00000490163 DDRGK1Q96HY6 314 aa5.35□□□□□ -1.55
UBXN4-208ENST00000490163 TMEM121BQ9BXQ6 578 aaPredicted RBP5.35□□□□□ -1.55
UBXN4-208ENST00000490163 RANGAP1P46060 587 aaPredicted RBP5.35□□□□□ -1.55
UBXN4-208ENST00000490163 MAP2K5Q13163 448 aa5.35□□□□□ -1.55
UBXN4-208ENST00000490163 RBM42Q9BTD8 480 aaKnown RBP5.35□□□□□ -1.55
UBXN4-208ENST00000490163 SH3D19Q5HYK7 790 aa5.34□□□□□ -1.55
UBXN4-208ENST00000490163 FAM117AQ9C073 453 aa5.34□□□□□ -1.55
UBXN4-208ENST00000490163 ABCB7O75027 752 aa5.34□□□□□ -1.55
UBXN4-208ENST00000490163 GPBP1L1Q9HC44 474 aaPredicted RBP5.34□□□□□ -1.55
UBXN4-208ENST00000490163 AMOTL2Q9Y2J4 779 aa5.33□□□□□ -1.56
UBXN4-208ENST00000490163 MCM6Q14566 821 aa5.33□□□□□ -1.56
UBXN4-208ENST00000490163 BANK1Q8NDB2 785 aa5.33□□□□□ -1.56
UBXN4-208ENST00000490163 IRF6O14896 467 aa5.32□□□□□ -1.56
UBXN4-208ENST00000490163 GPHNQ9NQX3 736 aaPredicted RBP5.32□□□□□ -1.56
UBXN4-208ENST00000490163 MLLT3P42568 568 aaPredicted RBP5.32□□□□□ -1.56
UBXN4-208ENST00000490163 PSEN1P49768 467 aa5.32□□□□□ -1.56
UBXN4-208ENST00000490163 PLSCR2Q9NRY7 297 aa5.31□□□□□ -1.56
UBXN4-208ENST00000490163 CCDC9Q9Y3X0 531 aaKnown RBP5.31□□□□□ -1.56
UBXN4-208ENST00000490163 GPIHBP1Q8IV16 184 aa5.31□□□□□ -1.56
UBXN4-208ENST00000490163 RBM26Q5T8P6 1007 aaKnown RBP5.3□□□□□ -1.56
UBXN4-208ENST00000490163 OSBPP22059 807 aa5.3□□□□□ -1.56
UBXN4-208ENST00000490163 PPP2R2DQ66LE6 453 aa5.3□□□□□ -1.56
UBXN4-208ENST00000490163 PARP9Q8IXQ6 854 aa5.3□□□□□ -1.56
UBXN4-208ENST00000490163 EMILIN3Q9NT22 766 aa5.3□□□□□ -1.56
UBXN4-208ENST00000490163 PYGBP11216 843 aa5.29□□□□□ -1.56
UBXN4-208ENST00000490163 DDX27Q96GQ7 796 aaKnown RBP5.29□□□□□ -1.56
UBXN4-208ENST00000490163 GNL3Q9BVP2 549 aaKnown RBP eCLIP5.29□□□□□ -1.56
UBXN4-208ENST00000490163 REM2Q8IYK8 340 aaPredicted RBP5.28□□□□□ -1.56
UBXN4-208ENST00000490163 SERPINA10Q9UK55 444 aa5.28□□□□□ -1.56
UBXN4-208ENST00000490163 KIF12Q96FN5 646 aa5.28□□□□□ -1.56
UBXN4-208ENST00000490163 LOC105371045A0A1W2PR82 267 aa5.27□□□□□ -1.57
UBXN4-208ENST00000490163 PPP1R15AO75807 674 aaPredicted RBP5.26□□□□□ -1.57
UBXN4-208ENST00000490163 FOXK1P85037 733 aa5.26□□□□□ -1.57
UBXN4-208ENST00000490163 TTC13Q8NBP0 860 aa5.26□□□□□ -1.57
UBXN4-208ENST00000490163 PATL2C9JE40 543 aaKnown RBP5.26□□□□□ -1.57
UBXN4-208ENST00000490163 KCNA1Q09470 495 aa5.26□□□□□ -1.57
UBXN4-208ENST00000490163 EFCAB3Q8N7B9 438 aa5.26□□□□□ -1.57
UBXN4-208ENST00000490163 IL27Q8NEV9 243 aa5.26□□□□□ -1.57
UBXN4-208ENST00000490163 ANO8Q9HCE9 1232 aaPredicted RBP5.26□□□□□ -1.57
UBXN4-208ENST00000490163 PDIA4P13667 645 aaKnown RBP5.25□□□□□ -1.57
UBXN4-208ENST00000490163 PHF8Q9UPP1 1060 aa5.25□□□□□ -1.57
UBXN4-208ENST00000490163 ZNF316A6NFI3 1004 aaPredicted RBP5.25□□□□□ -1.57
UBXN4-208ENST00000490163 IRF5Q13568 498 aa5.25□□□□□ -1.57
UBXN4-208ENST00000490163 SKIV2LQ15477 1246 aaKnown RBP5.25□□□□□ -1.57
UBXN4-208ENST00000490163 CCDC82Q8N4S0 544 aa5.25□□□□□ -1.57
UBXN4-208ENST00000490163 KDM4FA0A1W2PPD8 638 aa5.24□□□□□ -1.57
UBXN4-208ENST00000490163 HAX1O00165 279 aa5.24□□□□□ -1.57
UBXN4-208ENST00000490163 MS4A1P11836 297 aa5.24□□□□□ -1.57
UBXN4-208ENST00000490163 GJA5P36382 358 aa5.24□□□□□ -1.57
UBXN4-208ENST00000490163 PROSER2Q86WR7 435 aaPredicted RBP5.24□□□□□ -1.57
UBXN4-208ENST00000490163 FXR2P51116 673 aaKnown RBP eCLIP5.24□□□□□ -1.571e-8■■■□□ 15.8
UBXN4-208ENST00000490163 IFNL1Q8IU54 200 aa5.24□□□□□ -1.57
UBXN4-208ENST00000490163 SPDYE5A6NIY4 337 aa5.23□□□□□ -1.57
UBXN4-208ENST00000490163 CCDC102AQ96A19 550 aa5.23□□□□□ -1.57
UBXN4-208ENST00000490163 ZBTB7CA1YPR0 619 aa5.22□□□□□ -1.57
UBXN4-208ENST00000490163 PRIM1P49642 420 aaKnown RBP5.22□□□□□ -1.57
UBXN4-208ENST00000490163 TBC1D12O60347 775 aa5.22□□□□□ -1.57
UBXN4-208ENST00000490163 PDE4CQ08493 712 aa5.22□□□□□ -1.57
UBXN4-208ENST00000490163 PTGDRQ13258 359 aa5.22□□□□□ -1.57
UBXN4-208ENST00000490163 NPDC1Q9NQX5 325 aaPredicted RBP5.22□□□□□ -1.57
UBXN4-208ENST00000490163 SHROOM4Q9ULL8 1493 aa5.22□□□□□ -1.57
UBXN4-208ENST00000490163 LARP6Q9BRS8 491 aaKnown RBP5.21□□□□□ -1.57
UBXN4-208ENST00000490163 REPIN1Q9BWE0 567 aaKnown RBP5.21□□□□□ -1.57
UBXN4-208ENST00000490163 GNEQ9Y223 722 aaKnown RBP5.21□□□□□ -1.57
UBXN4-208ENST00000490163 FBXO31Q5XUX0 539 aaPredicted RBP5.21□□□□□ -1.58
UBXN4-208ENST00000490163 PRR29P0C7W0 189 aa5.21□□□□□ -1.58
UBXN4-208ENST00000490163 TSPYL2Q9H2G4 693 aaPredicted RBP5.2□□□□□ -1.58
UBXN4-208ENST00000490163 PCDHB8Q9UN66 801 aa5.2□□□□□ -1.58
UBXN4-208ENST00000490163 PCDHB13Q9Y5F0 798 aa5.2□□□□□ -1.58
UBXN4-208ENST00000490163 APBB1O00213 710 aa5.2□□□□□ -1.58
UBXN4-208ENST00000490163 PPP1R15BQ5SWA1 713 aa5.2□□□□□ -1.58
UBXN4-208ENST00000490163 USTQ9Y2C2 406 aa5.2□□□□□ -1.58
UBXN4-208ENST00000490163 HIC1Q14526 733 aa5.19□□□□□ -1.58
UBXN4-208ENST00000490163 COG6Q9Y2V7 657 aa5.19□□□□□ -1.58
UBXN4-208ENST00000490163 FARP1Q9Y4F1 1045 aaPredicted RBP5.19□□□□□ -1.58
UBXN4-208ENST00000490163 GNPATO15228 680 aa5.19□□□□□ -1.58
UBXN4-208ENST00000490163 PITPNM1O00562 1244 aa5.19□□□□□ -1.58
UBXN4-208ENST00000490163 GPR37L1O60883 481 aa5.19□□□□□ -1.58
UBXN4-208ENST00000490163 IGSF3O75054 1194 aa5.18□□□□□ -1.58
UBXN4-208ENST00000490163 VAMP1P23763 118 aa5.18□□□□□ -1.58
UBXN4-208ENST00000490163 CLUAP1Q96AJ1 413 aa5.17□□□□□ -1.58
UBXN4-208ENST00000490163 RBM47A0AV96 593 aaKnown RBP5.17□□□□□ -1.58
UBXN4-208ENST00000490163 BRD1O95696 1058 aa5.17□□□□□ -1.58
UBXN4-208ENST00000490163 SLC34A2O95436 690 aa5.16□□□□□ -1.58
UBXN4-208ENST00000490163 ELOAQ14241 798 aaKnown RBP5.16□□□□□ -1.58
UBXN4-208ENST00000490163 FCHSD2O94868 740 aa5.15□□□□□ -1.58
UBXN4-208ENST00000490163 RBM27Q9P2N5 1060 aaKnown RBP5.15□□□□□ -1.59
UBXN4-208ENST00000490163 ARID3CA6NKF2 412 aa5.14□□□□□ -1.59
UBXN4-208ENST00000490163 NISCHQ9Y2I1 1504 aa5.14□□□□□ -1.59
UBXN4-208ENST00000490163 CADPSQ9ULU8 1353 aa5.14□□□□□ -1.59
UBXN4-208ENST00000490163 TMEM88BA6NKF7 163 aa5.13□□□□□ -1.59
UBXN4-208ENST00000490163 FECHP22830 423 aa5.13□□□□□ -1.59
UBXN4-208ENST00000490163 PUS7Q96PZ0 661 aaKnown RBP5.13□□□□□ -1.59
UBXN4-208ENST00000490163 PHOX2BQ99453 314 aa5.13□□□□□ -1.59
UBXN4-208ENST00000490163 DSG2Q14126 1118 aa5.13□□□□□ -1.59
UBXN4-208ENST00000490163 GIGYF2Q6Y7W6 1299 aaKnown RBP5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms