RNA–Protein interactions for RNA: ENST00000489443.2

LMX1A-204, Transcript of LIM homeobox transcription factor 1 alpha, humanhuman

TSL 1 (best)

Gene LMX1A, Length 1,255 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1A-204ENST00000489443 FRMPD1Q5SYB0 1578 aa24.88■■□□□ 1.57
LMX1A-204ENST00000489443 PREX2Q70Z35 1606 aa24.87■■□□□ 1.57
LMX1A-204ENST00000489443 TIAM1Q13009 1591 aa24.87■■□□□ 1.57
LMX1A-204ENST00000489443 EHBP1L1Q8N3D4 1523 aa24.86■■□□□ 1.57
LMX1A-204ENST00000489443 RICTORQ6R327 1708 aa24.86■■□□□ 1.57
LMX1A-204ENST00000489443 CCNB3Q8WWL7 1395 aa24.84■■□□□ 1.57
LMX1A-204ENST00000489443 AEBP2Q6ZN18 517 aaPredicted RBP24.84■■□□□ 1.57
LMX1A-204ENST00000489443 ZNF777Q9ULD5 760 aaPredicted RBP24.83■■□□□ 1.57
LMX1A-204ENST00000489443 GPATCH8Q9UKJ3 1502 aaKnown RBP24.82■■□□□ 1.56
LMX1A-204ENST00000489443 POGZQ7Z3K3 1410 aa24.8■■□□□ 1.56
LMX1A-204ENST00000489443 APLP2Q06481 763 aa24.8■■□□□ 1.56
LMX1A-204ENST00000489443 KDM4FA0A1W2PPD8 638 aa24.79■■□□□ 1.56
LMX1A-204ENST00000489443 CFDP1Q9UEE9 299 aaPredicted RBP24.79■■□□□ 1.56
LMX1A-204ENST00000489443 LRRC9Q6ZRR7 1453 aa24.77■■□□□ 1.56
LMX1A-204ENST00000489443 SUPT6HQ7KZ85 1726 aaKnown RBP24.77■■□□□ 1.56
LMX1A-204ENST00000489443 MAP3K1Q13233 1512 aa24.76■■□□□ 1.55
LMX1A-204ENST00000489443 KANK4Q5T7N3 995 aaPredicted RBP24.76■■□□□ 1.55
LMX1A-204ENST00000489443 AFAP1Q8N556 730 aa24.76■■□□□ 1.55
LMX1A-204ENST00000489443 NCOA2Q15596 1464 aa24.75■■□□□ 1.55
LMX1A-204ENST00000489443 ZMYM4Q5VZL5 1548 aa24.75■■□□□ 1.55
LMX1A-204ENST00000489443 ABCC1P33527 1531 aa24.73■■□□□ 1.55
LMX1A-204ENST00000489443 ZNF518AQ6AHZ1 1483 aa24.73■■□□□ 1.55
LMX1A-204ENST00000489443 ARHGEF12Q9NZN5 1544 aa24.72■■□□□ 1.55
LMX1A-204ENST00000489443 MYT1LQ9UL68 1186 aa24.72■■□□□ 1.55
LMX1A-204ENST00000489443 SAMD9LQ8IVG5 1584 aa24.71■■□□□ 1.55
LMX1A-204ENST00000489443 ITSN2Q9NZM3 1697 aa24.71■■□□□ 1.55
LMX1A-204ENST00000489443 ZFYVE16Q7Z3T8 1539 aa24.71■■□□□ 1.55
LMX1A-204ENST00000489443 ARHGEF40Q8TER5 1519 aa24.71■■□□□ 1.55
LMX1A-204ENST00000489443 MAGI2Q86UL8 1455 aa24.7■■□□□ 1.55
LMX1A-204ENST00000489443 YEATS2Q9ULM3 1422 aa24.7■■□□□ 1.55
LMX1A-204ENST00000489443 TRAPPC8Q9Y2L5 1435 aa24.69■■□□□ 1.54
LMX1A-204ENST00000489443 ARID4BQ4LE39 1312 aaPredicted RBP24.69■■□□□ 1.54
LMX1A-204ENST00000489443 HNRNPMP52272 730 aaKnown RBP eCLIP24.69■■□□□ 1.54
LMX1A-204ENST00000489443 ZNF644Q9H582 1327 aaPredicted RBP24.67■■□□□ 1.54
LMX1A-204ENST00000489443 KDM5CP41229 1560 aa24.66■■□□□ 1.54
LMX1A-204ENST00000489443 SYCP2Q9BX26 1530 aa24.66■■□□□ 1.54
LMX1A-204ENST00000489443 PLEKHH2Q8IVE3 1493 aa24.65■■□□□ 1.54
LMX1A-204ENST00000489443 KIAA1107Q9UPP5 1409 aa24.63■■□□□ 1.53
LMX1A-204ENST00000489443 HECW2Q9P2P5 1572 aa24.62■■□□□ 1.53
LMX1A-204ENST00000489443 ATP10AO60312 1499 aa24.6■■□□□ 1.53
LMX1A-204ENST00000489443 MLH3Q9UHC1 1453 aa24.59■■□□□ 1.53
LMX1A-204ENST00000489443 SPAG9O60271 1321 aaKnown RBP24.58■■□□□ 1.52
LMX1A-204ENST00000489443 SIGLEC1Q9BZZ2 1709 aa24.55■■□□□ 1.52
LMX1A-204ENST00000489443 C9orf84Q5VXU9 1444 aa24.55■■□□□ 1.52
LMX1A-204ENST00000489443 CAMSAP2Q08AD1 1489 aa24.55■■□□□ 1.52
LMX1A-204ENST00000489443 KIDINS220Q9ULH0 1771 aa24.54■■□□□ 1.52
LMX1A-204ENST00000489443 BCORL1Q5H9F3 1711 aa24.54■■□□□ 1.52
LMX1A-204ENST00000489443 DIP2CQ9Y2E4 1556 aa24.54■■□□□ 1.52
LMX1A-204ENST00000489443 ABCA6Q8N139 1617 aa24.53■■□□□ 1.52
LMX1A-204ENST00000489443 MYOM3Q5VTT5 1437 aa24.53■■□□□ 1.52
LMX1A-204ENST00000489443 MBD5Q9P267 1494 aa24.53■■□□□ 1.52
LMX1A-204ENST00000489443 MLECQ14165 292 aa24.53■■□□□ 1.52
LMX1A-204ENST00000489443 ADAMTSL3P82987 1691 aa24.51■■□□□ 1.51
LMX1A-204ENST00000489443 ATP7AQ04656 1500 aa24.48■■□□□ 1.51
LMX1A-204ENST00000489443 MIA2Q96PC5 1412 aa24.48■■□□□ 1.51
LMX1A-204ENST00000489443 MADDQ8WXG6 1647 aa24.46■■□□□ 1.51
LMX1A-204ENST00000489443 RSPH4AQ5TD94 716 aa24.46■■□□□ 1.51
LMX1A-204ENST00000489443 INO80Q9ULG1 1556 aaPredicted RBP24.46■■□□□ 1.51
LMX1A-204ENST00000489443 CCDC141Q6ZP82 1450 aa24.45■■□□□ 1.51
LMX1A-204ENST00000489443 REREQ9P2R6 1566 aa24.44■■□□□ 1.5
LMX1A-204ENST00000489443 ARHGEF5Q12774 1597 aa24.42■■□□□ 1.5
LMX1A-204ENST00000489443 TSPY4P0CV99 314 aa24.42■■□□□ 1.5
LMX1A-204ENST00000489443 TSPY10P0CW01 314 aa24.42■■□□□ 1.5
LMX1A-204ENST00000489443 PPARGC1BQ86YN6 1023 aaKnown RBP24.41■■□□□ 1.5
LMX1A-204ENST00000489443 RIMS1Q86UR5 1692 aaKnown RBP24.4■■□□□ 1.5
LMX1A-204ENST00000489443 PTPRMP28827 1452 aa24.4■■□□□ 1.5
LMX1A-204ENST00000489443 RTEL1-TNFRSF6BF6WH68 1400 aa24.4■■□□□ 1.5
LMX1A-204ENST00000489443 PTPN23Q9H3S7 1636 aa24.39■■□□□ 1.5
LMX1A-204ENST00000489443 FGD6Q6ZV73 1430 aa24.39■■□□□ 1.5
LMX1A-204ENST00000489443 FER1L4A9Z1Z3 1794 aa24.37■■□□□ 1.49
LMX1A-204ENST00000489443 AGLP35573 1532 aa24.37■■□□□ 1.49
LMX1A-204ENST00000489443 PLPPR3Q6T4P5 718 aa24.37■■□□□ 1.49
LMX1A-204ENST00000489443 A2MP01023 1474 aa24.37■■□□□ 1.49
LMX1A-204ENST00000489443 ADGBQ8N7X0 1667 aa24.36■■□□□ 1.49
LMX1A-204ENST00000489443 ESF1Q9H501 851 aaKnown RBP24.31■■□□□ 1.48
LMX1A-204ENST00000489443 TCOF1Q13428 1488 aaKnown RBP24.31■■□□□ 1.48
LMX1A-204ENST00000489443 PLXNC1O60486 1568 aa24.3■■□□□ 1.48
LMX1A-204ENST00000489443 FAM50AQ14320 339 aaKnown RBP24.3■■□□□ 1.48
LMX1A-204ENST00000489443 DHX29Q7Z478 1369 aaKnown RBP24.29■■□□□ 1.48
LMX1A-204ENST00000489443 MAST1Q9Y2H9 1570 aa24.28■■□□□ 1.48
LMX1A-204ENST00000489443 ABCC5O15440 1437 aa24.27■■□□□ 1.48
LMX1A-204ENST00000489443 GGT6Q6P531 493 aa24.27■■□□□ 1.48
LMX1A-204ENST00000489443 DAPK1P53355 1430 aa24.25■■□□□ 1.47
LMX1A-204ENST00000489443 DNMT1P26358 1616 aaKnown RBP24.24■■□□□ 1.47
LMX1A-204ENST00000489443 KIF3BO15066 747 aa24.24■■□□□ 1.47
LMX1A-204ENST00000489443 CEBPAP49715 358 aaPredicted RBP24.24■■□□□ 1.47
LMX1A-204ENST00000489443 CROCC2H7BZ55 1655 aa24.24■■□□□ 1.47
LMX1A-204ENST00000489443 CHIC2Q9UKJ5 165 aa24.22■■□□□ 1.47
LMX1A-204ENST00000489443 SHANK2Q9UPX8 1470 aa24.2■■□□□ 1.47
LMX1A-204ENST00000489443 RRP7BPQ9NSQ0 103 aa24.19■■□□□ 1.46
LMX1A-204ENST00000489443 CNTLNQ9NXG0 1405 aa24.18■■□□□ 1.46
LMX1A-204ENST00000489443 KIF15Q9NS87 1388 aa24.16■■□□□ 1.46
LMX1A-204ENST00000489443 C3P01024 1663 aa24.15■■□□□ 1.46
LMX1A-204ENST00000489443 PPP6R1Q9UPN7 881 aa24.15■■□□□ 1.46
LMX1A-204ENST00000489443 CLTCQ00610 1675 aaKnown RBP24.15■■□□□ 1.46
LMX1A-204ENST00000489443 DUOX2Q9NRD8 1548 aa24.14■■□□□ 1.45
LMX1A-204ENST00000489443 ANKRD30AQ9BXX3 1397 aa24.13■■□□□ 1.45
LMX1A-204ENST00000489443 ZMYM3Q14202 1370 aa24.12■■□□□ 1.45
LMX1A-204ENST00000489443 MROH2AA6NES4 1674 aa24.11■■□□□ 1.45
LMX1A-204ENST00000489443 SETD1BQ9UPS6 1966 aaKnown RBP24.09■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms