RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 KIF14Q15058 1648 aa20.49■□□□□ 0.87
CPSF3-204ENST00000489403 POGZQ7Z3K3 1410 aa20.49■□□□□ 0.87
CPSF3-204ENST00000489403 MAGI2Q86UL8 1455 aa20.49■□□□□ 0.87
CPSF3-204ENST00000489403 SCAPERQ9BY12 1400 aa20.48■□□□□ 0.87
CPSF3-204ENST00000489403 PCF11O94913 1555 aaKnown RBP20.46■□□□□ 0.87
CPSF3-204ENST00000489403 CDK11AQ9UQ88 783 aaPredicted RBP20.45■□□□□ 0.86
CPSF3-204ENST00000489403 TROQ12816 1431 aaPredicted RBP20.44■□□□□ 0.86
CPSF3-204ENST00000489403 LMTK3Q96Q04 1460 aa20.43■□□□□ 0.86
CPSF3-204ENST00000489403 EFCAB2Q5VUJ9 269 aa20.41■□□□□ 0.86
CPSF3-204ENST00000489403 CLIP1P30622 1438 aa20.41■□□□□ 0.86
CPSF3-204ENST00000489403 FER1L4A9Z1Z3 1794 aa20.39■□□□□ 0.86
CPSF3-204ENST00000489403 ARHGAP5Q13017 1502 aa20.39■□□□□ 0.85
CPSF3-204ENST00000489403 KDM5CP41229 1560 aa20.37■□□□□ 0.85
CPSF3-204ENST00000489403 ATP10AO60312 1499 aa20.37■□□□□ 0.85
CPSF3-204ENST00000489403 ZNF518AQ6AHZ1 1483 aa20.37■□□□□ 0.85
CPSF3-204ENST00000489403 C9orf84Q5VXU9 1444 aa20.36■□□□□ 0.85
CPSF3-204ENST00000489403 CDC42BPBQ9Y5S2 1711 aa20.36■□□□□ 0.85
CPSF3-204ENST00000489403 MLECQ14165 292 aa20.35■□□□□ 0.85
CPSF3-204ENST00000489403 ARHGEF12Q9NZN5 1544 aa20.35■□□□□ 0.85
CPSF3-204ENST00000489403 CCDC18Q5T9S5 1454 aa20.35■□□□□ 0.85
CPSF3-204ENST00000489403 CASKIN1Q8WXD9 1431 aa20.35■□□□□ 0.85
CPSF3-204ENST00000489403 PLPPR3Q6T4P5 718 aa20.34■□□□□ 0.85
CPSF3-204ENST00000489403 PREX2Q70Z35 1606 aa20.33■□□□□ 0.84
CPSF3-204ENST00000489403 AFAP1Q8N556 730 aa20.31■□□□□ 0.84
CPSF3-204ENST00000489403 DIP2CQ9Y2E4 1556 aa20.29■□□□□ 0.84
CPSF3-204ENST00000489403 ABCC1P33527 1531 aa20.29■□□□□ 0.84
CPSF3-204ENST00000489403 FYCO1Q9BQS8 1478 aa20.29■□□□□ 0.84
CPSF3-204ENST00000489403 HSPA2P54652 639 aa20.28■□□□□ 0.84
CPSF3-204ENST00000489403 ABCA6Q8N139 1617 aa20.27■□□□□ 0.84
CPSF3-204ENST00000489403 ITSN2Q9NZM3 1697 aa20.27■□□□□ 0.84
CPSF3-204ENST00000489403 CDC42BPAQ5VT25 1732 aa20.27■□□□□ 0.83
CPSF3-204ENST00000489403 REREQ9P2R6 1566 aa20.26■□□□□ 0.83
CPSF3-204ENST00000489403 FBXO41Q8TF61 875 aa20.26■□□□□ 0.83
CPSF3-204ENST00000489403 MLH3Q9UHC1 1453 aa20.25■□□□□ 0.83
CPSF3-204ENST00000489403 TRAPPC8Q9Y2L5 1435 aa20.25■□□□□ 0.83
CPSF3-204ENST00000489403 MYT1LQ9UL68 1186 aa20.23■□□□□ 0.83
CPSF3-204ENST00000489403 PREX1Q8TCU6 1659 aa20.22■□□□□ 0.83
CPSF3-204ENST00000489403 KIDINS220Q9ULH0 1771 aa20.2■□□□□ 0.82
CPSF3-204ENST00000489403 CEBPAP49715 358 aaPredicted RBP20.19■□□□□ 0.82
CPSF3-204ENST00000489403 AGLP35573 1532 aa20.18■□□□□ 0.82
CPSF3-204ENST00000489403 SAMD9LQ8IVG5 1584 aa20.18■□□□□ 0.82
CPSF3-204ENST00000489403 GPATCH8Q9UKJ3 1502 aaKnown RBP20.16■□□□□ 0.82
CPSF3-204ENST00000489403 SYCP2Q9BX26 1530 aa20.15■□□□□ 0.82
CPSF3-204ENST00000489403 C3P01024 1663 aa20.15■□□□□ 0.82
CPSF3-204ENST00000489403 ZNF777Q9ULD5 760 aaPredicted RBP20.12■□□□□ 0.81
CPSF3-204ENST00000489403 UHRF1BP1Q6BDS2 1440 aa20.11■□□□□ 0.81
CPSF3-204ENST00000489403 SETD1BQ9UPS6 1966 aaKnown RBP20.1■□□□□ 0.81
CPSF3-204ENST00000489403 STRCQ7RTU9 1775 aa20.1■□□□□ 0.81
CPSF3-204ENST00000489403 HNRNPMP52272 730 aaKnown RBP eCLIP20.07■□□□□ 0.83e-8■■■■□ 24.4
CPSF3-204ENST00000489403 MTUS2Q5JR59 1369 aa20.07■□□□□ 0.8
CPSF3-204ENST00000489403 CCNB3Q8WWL7 1395 aa20.07■□□□□ 0.8
CPSF3-204ENST00000489403 INO80Q9ULG1 1556 aaPredicted RBP20.06■□□□□ 0.8
CPSF3-204ENST00000489403 KIAA1107Q9UPP5 1409 aa20.06■□□□□ 0.8
CPSF3-204ENST00000489403 ATP7AQ04656 1500 aa20.06■□□□□ 0.8
CPSF3-204ENST00000489403 PLEKHH2Q8IVE3 1493 aa20.05■□□□□ 0.8
CPSF3-204ENST00000489403 SPAG9O60271 1321 aaKnown RBP20.05■□□□□ 0.8
CPSF3-204ENST00000489403 SUPT6HQ7KZ85 1726 aaKnown RBP20.05■□□□□ 0.8
CPSF3-204ENST00000489403 CNTLNQ9NXG0 1405 aa20.05■□□□□ 0.8
CPSF3-204ENST00000489403 ESF1Q9H501 851 aaKnown RBP20.05■□□□□ 0.8
CPSF3-204ENST00000489403 CFDP1Q9UEE9 299 aaPredicted RBP20.05■□□□□ 0.8
CPSF3-204ENST00000489403 TIAM1Q13009 1591 aa20.04■□□□□ 0.8
CPSF3-204ENST00000489403 CERKQ8TCT0 537 aa20.04■□□□□ 0.8
CPSF3-204ENST00000489403 PLXNC1O60486 1568 aa20.04■□□□□ 0.8
CPSF3-204ENST00000489403 MROH2AA6NES4 1674 aa20.03■□□□□ 0.8
CPSF3-204ENST00000489403 EHBP1L1Q8N3D4 1523 aa20.03■□□□□ 0.8
CPSF3-204ENST00000489403 CEP162Q5TB80 1403 aa20■□□□□ 0.79
CPSF3-204ENST00000489403 A2MP01023 1474 aa19.99■□□□□ 0.79
CPSF3-204ENST00000489403 DMRT2Q9Y5R5 561 aa19.98■□□□□ 0.79
CPSF3-204ENST00000489403 CLTCQ00610 1675 aaKnown RBP19.97■□□□□ 0.79
CPSF3-204ENST00000489403 NPATQ14207 1427 aa19.96■□□□□ 0.79
CPSF3-204ENST00000489403 MBD5Q9P267 1494 aa19.96■□□□□ 0.79
CPSF3-204ENST00000489403 ADGBQ8N7X0 1667 aa19.96■□□□□ 0.79
CPSF3-204ENST00000489403 ZNF644Q9H582 1327 aaPredicted RBP19.96■□□□□ 0.79
CPSF3-204ENST00000489403 ZMYM3Q14202 1370 aa19.95■□□□□ 0.79
CPSF3-204ENST00000489403 PTPRTO14522 1441 aa19.95■□□□□ 0.78
CPSF3-204ENST00000489403 NCOA1Q15788 1441 aa19.93■□□□□ 0.78
CPSF3-204ENST00000489403 CAMSAP1Q5T5Y3 1602 aa19.91■□□□□ 0.78
CPSF3-204ENST00000489403 MYO3AQ8NEV4 1616 aa19.91■□□□□ 0.78
CPSF3-204ENST00000489403 GGT6Q6P531 493 aa19.9■□□□□ 0.78
CPSF3-204ENST00000489403 RTEL1-TNFRSF6BF6WH68 1400 aa19.9■□□□□ 0.78
CPSF3-204ENST00000489403 ZNF142P52746 1687 aaPredicted RBP19.89■□□□□ 0.77
CPSF3-204ENST00000489403 NCOA2Q15596 1464 aa19.89■□□□□ 0.77
CPSF3-204ENST00000489403 PTPRKQ15262 1439 aa19.88■□□□□ 0.77
CPSF3-204ENST00000489403 CAMSAP2Q08AD1 1489 aa19.87■□□□□ 0.77
CPSF3-204ENST00000489403 LTBP4Q8N2S1 1624 aa19.86■□□□□ 0.77
CPSF3-204ENST00000489403 CCDC141Q6ZP82 1450 aa19.86■□□□□ 0.77
CPSF3-204ENST00000489403 CEP170BQ9Y4F5 1589 aaPredicted RBP19.85■□□□□ 0.77
CPSF3-204ENST00000489403 DHX29Q7Z478 1369 aaKnown RBP19.84■□□□□ 0.77
CPSF3-204ENST00000489403 PPP6R1Q9UPN7 881 aa19.83■□□□□ 0.77
CPSF3-204ENST00000489403 PLA2R1Q13018 1463 aa19.82■□□□□ 0.76
CPSF3-204ENST00000489403 VPS8Q8N3P4 1428 aa19.81■□□□□ 0.76
CPSF3-204ENST00000489403 NCKAP5LQ9HCH0 1330 aa19.8■□□□□ 0.76
CPSF3-204ENST00000489403 ARHGEF5Q12774 1597 aa19.79■□□□□ 0.76
CPSF3-204ENST00000489403 TCOF1Q13428 1488 aaKnown RBP19.79■□□□□ 0.76
CPSF3-204ENST00000489403 KDM5DQ9BY66 1539 aa19.78■□□□□ 0.76
CPSF3-204ENST00000489403 IQSEC2Q5JU85 1478 aa19.78■□□□□ 0.76
CPSF3-204ENST00000489403 LRRC9Q6ZRR7 1453 aa19.78■□□□□ 0.76
CPSF3-204ENST00000489403 KIF3BO15066 747 aa19.77■□□□□ 0.76
CPSF3-204ENST00000489403 RSPH4AQ5TD94 716 aa19.77■□□□□ 0.76
CPSF3-204ENST00000489403 FAM135AQ9P2D6 1515 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms