RNA–Protein interactions for RNA: ENST00000489142.5

VTI1A-206, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-206ENST00000489142 ZMYM4Q5VZL5 1548 aa22.62■■□□□ 1.21
VTI1A-206ENST00000489142 PREX2Q70Z35 1606 aa22.6■■□□□ 1.21
VTI1A-206ENST00000489142 POGZQ7Z3K3 1410 aa22.6■■□□□ 1.21
VTI1A-206ENST00000489142 LOC105371045A0A1W2PR82 267 aa22.6■■□□□ 1.21
VTI1A-206ENST00000489142 EFCAB2Q5VUJ9 269 aa22.6■■□□□ 1.21
VTI1A-206ENST00000489142 YEATS2Q9ULM3 1422 aa22.59■■□□□ 1.21
VTI1A-206ENST00000489142 ZFYVE16Q7Z3T8 1539 aa22.59■■□□□ 1.21
VTI1A-206ENST00000489142 CDC42BPAQ5VT25 1732 aa22.59■■□□□ 1.21
VTI1A-206ENST00000489142 SIGLEC1Q9BZZ2 1709 aa22.59■■□□□ 1.21
VTI1A-206ENST00000489142 ARID4BQ4LE39 1312 aaPredicted RBP22.57■■□□□ 1.2
VTI1A-206ENST00000489142 BCORL1Q5H9F3 1711 aa22.57■■□□□ 1.2
VTI1A-206ENST00000489142 ADAMTSL3P82987 1691 aa22.57■■□□□ 1.2
VTI1A-206ENST00000489142 MADDQ8WXG6 1647 aa22.53■■□□□ 1.2
VTI1A-206ENST00000489142 ITSN2Q9NZM3 1697 aa22.5■■□□□ 1.19
VTI1A-206ENST00000489142 ABCC1P33527 1531 aa22.5■■□□□ 1.19
VTI1A-206ENST00000489142 MAGI2Q86UL8 1455 aa22.49■■□□□ 1.19
VTI1A-206ENST00000489142 ZNF518AQ6AHZ1 1483 aa22.48■■□□□ 1.19
VTI1A-206ENST00000489142 ARHGEF12Q9NZN5 1544 aa22.48■■□□□ 1.19
VTI1A-206ENST00000489142 HECW2Q9P2P5 1572 aa22.48■■□□□ 1.19
VTI1A-206ENST00000489142 AFAP1Q8N556 730 aa22.48■■□□□ 1.19
VTI1A-206ENST00000489142 RIMS1Q86UR5 1692 aaKnown RBP22.48■■□□□ 1.19
VTI1A-206ENST00000489142 KDM5CP41229 1560 aa22.47■■□□□ 1.19
VTI1A-206ENST00000489142 MTUS2Q5JR59 1369 aa22.47■■□□□ 1.19
VTI1A-206ENST00000489142 PTPRMP28827 1452 aa22.46■■□□□ 1.19
VTI1A-206ENST00000489142 GPATCH8Q9UKJ3 1502 aaKnown RBP22.45■■□□□ 1.18
VTI1A-206ENST00000489142 SAMD9LQ8IVG5 1584 aa22.45■■□□□ 1.18
VTI1A-206ENST00000489142 MYT1LQ9UL68 1186 aa22.44■■□□□ 1.18
VTI1A-206ENST00000489142 ZNF777Q9ULD5 760 aaPredicted RBP22.44■■□□□ 1.18
VTI1A-206ENST00000489142 TRAPPC8Q9Y2L5 1435 aa22.44■■□□□ 1.18
VTI1A-206ENST00000489142 EHBP1L1Q8N3D4 1523 aa22.42■■□□□ 1.18
VTI1A-206ENST00000489142 ATP10AO60312 1499 aa22.42■■□□□ 1.18
VTI1A-206ENST00000489142 MLECQ14165 292 aa22.42■■□□□ 1.18
VTI1A-206ENST00000489142 ABCA6Q8N139 1617 aa22.42■■□□□ 1.18
VTI1A-206ENST00000489142 C9orf84Q5VXU9 1444 aa22.41■■□□□ 1.18
VTI1A-206ENST00000489142 DIP2CQ9Y2E4 1556 aa22.41■■□□□ 1.18
VTI1A-206ENST00000489142 SYCP2Q9BX26 1530 aa22.41■■□□□ 1.18
VTI1A-206ENST00000489142 TIAM1Q13009 1591 aa22.4■■□□□ 1.18
VTI1A-206ENST00000489142 FER1L4A9Z1Z3 1794 aa22.4■■□□□ 1.18
VTI1A-206ENST00000489142 CCNB3Q8WWL7 1395 aa22.39■■□□□ 1.18
VTI1A-206ENST00000489142 PLPPR3Q6T4P5 718 aa22.38■■□□□ 1.17
VTI1A-206ENST00000489142 KIDINS220Q9ULH0 1771 aa22.36■■□□□ 1.17
VTI1A-206ENST00000489142 VPS8Q8N3P4 1428 aa22.36■■□□□ 1.17
VTI1A-206ENST00000489142 CFDP1Q9UEE9 299 aaPredicted RBP22.35■■□□□ 1.17
VTI1A-206ENST00000489142 MLH3Q9UHC1 1453 aa22.34■■□□□ 1.17
VTI1A-206ENST00000489142 HNRNPMP52272 730 aaKnown RBP eCLIP22.34■■□□□ 1.17
VTI1A-206ENST00000489142 SUPT6HQ7KZ85 1726 aaKnown RBP22.32■■□□□ 1.16
VTI1A-206ENST00000489142 ZNF644Q9H582 1327 aaPredicted RBP22.3■■□□□ 1.16
VTI1A-206ENST00000489142 NCOA2Q15596 1464 aa22.29■■□□□ 1.16
VTI1A-206ENST00000489142 REREQ9P2R6 1566 aa22.29■■□□□ 1.16
VTI1A-206ENST00000489142 PLEKHH2Q8IVE3 1493 aa22.27■■□□□ 1.16
VTI1A-206ENST00000489142 KIAA1107Q9UPP5 1409 aa22.26■■□□□ 1.15
VTI1A-206ENST00000489142 SPAG9O60271 1321 aaKnown RBP22.26■■□□□ 1.15
VTI1A-206ENST00000489142 INO80Q9ULG1 1556 aaPredicted RBP22.25■■□□□ 1.15
VTI1A-206ENST00000489142 ATP7AQ04656 1500 aa22.25■■□□□ 1.15
VTI1A-206ENST00000489142 LRRC9Q6ZRR7 1453 aa22.24■■□□□ 1.15
VTI1A-206ENST00000489142 LMTK3Q96Q04 1460 aa22.22■■□□□ 1.15
VTI1A-206ENST00000489142 AGLP35573 1532 aa22.21■■□□□ 1.15
VTI1A-206ENST00000489142 KANK4Q5T7N3 995 aaPredicted RBP22.2■■□□□ 1.14
VTI1A-206ENST00000489142 CAMSAP2Q08AD1 1489 aa22.2■■□□□ 1.14
VTI1A-206ENST00000489142 CEBPAP49715 358 aaPredicted RBP22.19■■□□□ 1.14
VTI1A-206ENST00000489142 MBD5Q9P267 1494 aa22.19■■□□□ 1.14
VTI1A-206ENST00000489142 MAP3K1Q13233 1512 aa22.16■■□□□ 1.14
VTI1A-206ENST00000489142 C3P01024 1663 aa22.15■■□□□ 1.14
VTI1A-206ENST00000489142 ADGBQ8N7X0 1667 aa22.14■■□□□ 1.14
VTI1A-206ENST00000489142 PLXNC1O60486 1568 aa22.14■■□□□ 1.13
VTI1A-206ENST00000489142 HSPA2P54652 639 aa22.14■■□□□ 1.13
VTI1A-206ENST00000489142 A2MP01023 1474 aa22.13■■□□□ 1.13
VTI1A-206ENST00000489142 PREX1Q8TCU6 1659 aa22.12■■□□□ 1.13
VTI1A-206ENST00000489142 CCDC141Q6ZP82 1450 aa22.11■■□□□ 1.13
VTI1A-206ENST00000489142 ESF1Q9H501 851 aaKnown RBP22.1■■□□□ 1.13
VTI1A-206ENST00000489142 CLTCQ00610 1675 aaKnown RBP22.08■■□□□ 1.13
VTI1A-206ENST00000489142 ARHGEF5Q12774 1597 aa22.07■■□□□ 1.12
VTI1A-206ENST00000489142 RTEL1-TNFRSF6BF6WH68 1400 aa22.06■■□□□ 1.12
VTI1A-206ENST00000489142 MYOM3Q5VTT5 1437 aa22.06■■□□□ 1.12
VTI1A-206ENST00000489142 APLP2Q06481 763 aa22.05■■□□□ 1.12
VTI1A-206ENST00000489142 MROH2AA6NES4 1674 aa22.04■■□□□ 1.12
VTI1A-206ENST00000489142 GGT6Q6P531 493 aa22.03■■□□□ 1.12
VTI1A-206ENST00000489142 CNTLNQ9NXG0 1405 aa22.03■■□□□ 1.12
VTI1A-206ENST00000489142 UHRF1BP1Q6BDS2 1440 aa22■■□□□ 1.11
VTI1A-206ENST00000489142 SETD1BQ9UPS6 1966 aaKnown RBP22■■□□□ 1.11
VTI1A-206ENST00000489142 DHX29Q7Z478 1369 aaKnown RBP21.99■■□□□ 1.11
VTI1A-206ENST00000489142 MIA2Q96PC5 1412 aa21.98■■□□□ 1.11
VTI1A-206ENST00000489142 RSPH4AQ5TD94 716 aa21.97■■□□□ 1.11
VTI1A-206ENST00000489142 PTPN23Q9H3S7 1636 aa21.97■■□□□ 1.11
VTI1A-206ENST00000489142 ZMYM3Q14202 1370 aa21.97■■□□□ 1.11
VTI1A-206ENST00000489142 TSPY4P0CV99 314 aa21.96■■□□□ 1.11
VTI1A-206ENST00000489142 TSPY10P0CW01 314 aa21.96■■□□□ 1.11
VTI1A-206ENST00000489142 MAST1Q9Y2H9 1570 aa21.95■■□□□ 1.11
VTI1A-206ENST00000489142 KIF3BO15066 747 aa21.94■■□□□ 1.1
VTI1A-206ENST00000489142 ILDR1Q86SU0 546 aaPredicted RBP21.94■■□□□ 1.1
VTI1A-206ENST00000489142 CROCC2H7BZ55 1655 aa21.94■■□□□ 1.1
VTI1A-206ENST00000489142 STRCQ7RTU9 1775 aa21.94■■□□□ 1.1
VTI1A-206ENST00000489142 FGD6Q6ZV73 1430 aa21.9■■□□□ 1.1
VTI1A-206ENST00000489142 NPATQ14207 1427 aa21.89■■□□□ 1.1
VTI1A-206ENST00000489142 MYO3AQ8NEV4 1616 aa21.89■■□□□ 1.09
VTI1A-206ENST00000489142 PTPRKQ15262 1439 aa21.88■■□□□ 1.09
VTI1A-206ENST00000489142 KDM5DQ9BY66 1539 aa21.87■■□□□ 1.09
VTI1A-206ENST00000489142 ABCC5O15440 1437 aa21.87■■□□□ 1.09
VTI1A-206ENST00000489142 DNMT1P26358 1616 aaKnown RBP21.86■■□□□ 1.09
VTI1A-206ENST00000489142 RNF17Q9BXT8 1623 aaKnown RBP21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms