RNA–Protein interactions for RNA: ENST00000489072.5

HMGN1-217, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 1,014 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-217ENST00000489072 CDC42BPBQ9Y5S2 1711 aa40.2■■■■■ 4.03
HMGN1-217ENST00000489072 ARHGAP5Q13017 1502 aa40.2■■■■■ 4.03
HMGN1-217ENST00000489072 ARHGEF40Q8TER5 1519 aa40.2■■■■■ 4.03
HMGN1-217ENST00000489072 POGZQ7Z3K3 1410 aa40.17■■■■■ 4.02
HMGN1-217ENST00000489072 PREX2Q70Z35 1606 aa40.16■■■■■ 4.02
HMGN1-217ENST00000489072 CDC42BPAQ5VT25 1732 aa40.11■■■■■ 4.01
HMGN1-217ENST00000489072 YEATS2Q9ULM3 1422 aa40.08■■■■■ 4.01
HMGN1-217ENST00000489072 ZFYVE16Q7Z3T8 1539 aa40.08■■■■■ 4.01
HMGN1-217ENST00000489072 MAGI2Q86UL8 1455 aa40.07■■■■■ 4
HMGN1-217ENST00000489072 ADAMTSL3P82987 1691 aa40.03■■■■■ 4
HMGN1-217ENST00000489072 BCORL1Q5H9F3 1711 aa40.02■■■■■ 4
HMGN1-217ENST00000489072 MTUS2Q5JR59 1369 aa39.99■■■■□ 3.99
HMGN1-217ENST00000489072 ZNF518AQ6AHZ1 1483 aa39.99■■■■□ 3.99
HMGN1-217ENST00000489072 SIGLEC1Q9BZZ2 1709 aa39.99■■■■□ 3.99
HMGN1-217ENST00000489072 ARID4BQ4LE39 1312 aaPredicted RBP39.98■■■■□ 3.99
HMGN1-217ENST00000489072 ABCC1P33527 1531 aa39.98■■■■□ 3.99
HMGN1-217ENST00000489072 KDM5CP41229 1560 aa39.97■■■■□ 3.99
HMGN1-217ENST00000489072 GPATCH8Q9UKJ3 1502 aaKnown RBP39.96■■■■□ 3.99
HMGN1-217ENST00000489072 ARHGEF12Q9NZN5 1544 aa39.96■■■■□ 3.99
HMGN1-217ENST00000489072 AFAP1Q8N556 730 aa39.95■■■■□ 3.99
HMGN1-217ENST00000489072 ITSN2Q9NZM3 1697 aa39.93■■■■□ 3.98
HMGN1-217ENST00000489072 EHBP1L1Q8N3D4 1523 aa39.92■■■■□ 3.98
HMGN1-217ENST00000489072 VPS8Q8N3P4 1428 aa39.9■■■■□ 3.98
HMGN1-217ENST00000489072 TRAPPC8Q9Y2L5 1435 aa39.89■■■■□ 3.98
HMGN1-217ENST00000489072 SAMD9LQ8IVG5 1584 aa39.89■■■■□ 3.98
HMGN1-217ENST00000489072 MADDQ8WXG6 1647 aa39.88■■■■□ 3.97
HMGN1-217ENST00000489072 ATP10AO60312 1499 aa39.87■■■■□ 3.97
HMGN1-217ENST00000489072 HECW2Q9P2P5 1572 aa39.86■■■■□ 3.97
HMGN1-217ENST00000489072 CCNB3Q8WWL7 1395 aa39.85■■■■□ 3.97
HMGN1-217ENST00000489072 PTPRMP28827 1452 aa39.83■■■■□ 3.97
HMGN1-217ENST00000489072 ZNF777Q9ULD5 760 aaPredicted RBP39.83■■■■□ 3.97
HMGN1-217ENST00000489072 TIAM1Q13009 1591 aa39.82■■■■□ 3.97
HMGN1-217ENST00000489072 C9orf84Q5VXU9 1444 aa39.81■■■■□ 3.96
HMGN1-217ENST00000489072 MLH3Q9UHC1 1453 aa39.8■■■■□ 3.96
HMGN1-217ENST00000489072 DIP2CQ9Y2E4 1556 aa39.79■■■■□ 3.96
HMGN1-217ENST00000489072 SYCP2Q9BX26 1530 aa39.78■■■■□ 3.96
HMGN1-217ENST00000489072 CFDP1Q9UEE9 299 aaPredicted RBP39.78■■■■□ 3.96
HMGN1-217ENST00000489072 RIMS1Q86UR5 1692 aaKnown RBP39.76■■■■□ 3.96
HMGN1-217ENST00000489072 ABCA6Q8N139 1617 aa39.76■■■■□ 3.95
HMGN1-217ENST00000489072 MYT1LQ9UL68 1186 aa39.74■■■■□ 3.95
HMGN1-217ENST00000489072 KIDINS220Q9ULH0 1771 aa39.72■■■■□ 3.95
HMGN1-217ENST00000489072 SUPT6HQ7KZ85 1726 aaKnown RBP39.71■■■■□ 3.95
HMGN1-217ENST00000489072 HNRNPMP52272 730 aaKnown RBP eCLIP39.7■■■■□ 3.95
HMGN1-217ENST00000489072 MLECQ14165 292 aa39.7■■■■□ 3.95
HMGN1-217ENST00000489072 KIAA1107Q9UPP5 1409 aa39.69■■■■□ 3.94
HMGN1-217ENST00000489072 NCOA2Q15596 1464 aa39.68■■■■□ 3.94
HMGN1-217ENST00000489072 PLEKHH2Q8IVE3 1493 aa39.68■■■■□ 3.94
HMGN1-217ENST00000489072 REREQ9P2R6 1566 aa39.67■■■■□ 3.94
HMGN1-217ENST00000489072 FER1L4A9Z1Z3 1794 aa39.65■■■■□ 3.94
HMGN1-217ENST00000489072 LRRC9Q6ZRR7 1453 aa39.63■■■■□ 3.94
HMGN1-217ENST00000489072 ZNF644Q9H582 1327 aaPredicted RBP39.63■■■■□ 3.93
HMGN1-217ENST00000489072 MAP3K1Q13233 1512 aa39.6■■■■□ 3.93
HMGN1-217ENST00000489072 SPAG9O60271 1321 aaKnown RBP39.57■■■■□ 3.92
HMGN1-217ENST00000489072 INO80Q9ULG1 1556 aaPredicted RBP39.55■■■■□ 3.92
HMGN1-217ENST00000489072 KANK4Q5T7N3 995 aaPredicted RBP39.54■■■■□ 3.92
HMGN1-217ENST00000489072 MBD5Q9P267 1494 aa39.54■■■■□ 3.92
HMGN1-217ENST00000489072 AGLP35573 1532 aa39.54■■■■□ 3.92
HMGN1-217ENST00000489072 ATP7AQ04656 1500 aa39.54■■■■□ 3.92
HMGN1-217ENST00000489072 PLPPR3Q6T4P5 718 aa39.47■■■■□ 3.91
HMGN1-217ENST00000489072 CAMSAP2Q08AD1 1489 aa39.47■■■■□ 3.91
HMGN1-217ENST00000489072 LMTK3Q96Q04 1460 aa39.38■■■■□ 3.9
HMGN1-217ENST00000489072 PLXNC1O60486 1568 aa39.38■■■■□ 3.89
HMGN1-217ENST00000489072 A2MP01023 1474 aa39.36■■■■□ 3.89
HMGN1-217ENST00000489072 CCDC141Q6ZP82 1450 aa39.36■■■■□ 3.89
HMGN1-217ENST00000489072 ADGBQ8N7X0 1667 aa39.34■■■■□ 3.89
HMGN1-217ENST00000489072 RTEL1-TNFRSF6BF6WH68 1400 aa39.33■■■■□ 3.89
HMGN1-217ENST00000489072 CEBPAP49715 358 aaPredicted RBP39.33■■■■□ 3.89
HMGN1-217ENST00000489072 APLP2Q06481 763 aa39.31■■■■□ 3.88
HMGN1-217ENST00000489072 ARHGEF5Q12774 1597 aa39.3■■■■□ 3.88
HMGN1-217ENST00000489072 MYOM3Q5VTT5 1437 aa39.3■■■■□ 3.88
HMGN1-217ENST00000489072 C3P01024 1663 aa39.26■■■■□ 3.88
HMGN1-217ENST00000489072 RSPH4AQ5TD94 716 aa39.26■■■■□ 3.88
HMGN1-217ENST00000489072 MIA2Q96PC5 1412 aa39.24■■■■□ 3.87
HMGN1-217ENST00000489072 ESF1Q9H501 851 aaKnown RBP39.21■■■■□ 3.87
HMGN1-217ENST00000489072 PREX1Q8TCU6 1659 aa39.19■■■■□ 3.86
HMGN1-217ENST00000489072 CNTLNQ9NXG0 1405 aa39.19■■■■□ 3.86
HMGN1-217ENST00000489072 HSPA2P54652 639 aa39.17■■■■□ 3.86
HMGN1-217ENST00000489072 DHX29Q7Z478 1369 aaKnown RBP39.17■■■■□ 3.86
HMGN1-217ENST00000489072 SETD1BQ9UPS6 1966 aaKnown RBP39.15■■■■□ 3.86
HMGN1-217ENST00000489072 MROH2AA6NES4 1674 aa39.15■■■■□ 3.86
HMGN1-217ENST00000489072 TSPY4P0CV99 314 aa39.12■■■■□ 3.85
HMGN1-217ENST00000489072 TSPY10P0CW01 314 aa39.12■■■■□ 3.85
HMGN1-217ENST00000489072 CLTCQ00610 1675 aaKnown RBP39.12■■■■□ 3.85
HMGN1-217ENST00000489072 GGT6Q6P531 493 aa39.11■■■■□ 3.85
HMGN1-217ENST00000489072 MAST1Q9Y2H9 1570 aa39.11■■■■□ 3.85
HMGN1-217ENST00000489072 PTPN23Q9H3S7 1636 aa39.08■■■■□ 3.85
HMGN1-217ENST00000489072 ZMYM3Q14202 1370 aa39.05■■■■□ 3.84
HMGN1-217ENST00000489072 UHRF1BP1Q6BDS2 1440 aa39.03■■■■□ 3.84
HMGN1-217ENST00000489072 FGD6Q6ZV73 1430 aa39.03■■■■□ 3.84
HMGN1-217ENST00000489072 KIF3BO15066 747 aa39■■■■□ 3.83
HMGN1-217ENST00000489072 PPP6R1Q9UPN7 881 aa38.99■■■■□ 3.83
HMGN1-217ENST00000489072 TCOF1Q13428 1488 aaKnown RBP38.98■■■■□ 3.83
HMGN1-217ENST00000489072 CROCC2H7BZ55 1655 aa38.97■■■■□ 3.83
HMGN1-217ENST00000489072 NPATQ14207 1427 aa38.96■■■■□ 3.83
HMGN1-217ENST00000489072 ABCC5O15440 1437 aa38.95■■■■□ 3.83
HMGN1-217ENST00000489072 DNMT1P26358 1616 aaKnown RBP38.91■■■■□ 3.82
HMGN1-217ENST00000489072 SHANK2Q9UPX8 1470 aa38.91■■■■□ 3.82
HMGN1-217ENST00000489072 PTPRKQ15262 1439 aa38.89■■■■□ 3.82
HMGN1-217ENST00000489072 DAPK1P53355 1430 aa38.89■■■■□ 3.82
HMGN1-217ENST00000489072 KDM5DQ9BY66 1539 aa38.87■■■■□ 3.81
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms