RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 ARHGAP5Q13017 1502 aa37.25■■■■□ 3.55
COL9A3-213ENST00000489045 BCORL1Q5H9F3 1711 aa37.24■■■■□ 3.55
COL9A3-213ENST00000489045 EFCAB2Q5VUJ9 269 aa37.24■■■■□ 3.55
COL9A3-213ENST00000489045 CDC42BPBQ9Y5S2 1711 aa37.24■■■■□ 3.55
COL9A3-213ENST00000489045 ZFYVE16Q7Z3T8 1539 aa37.23■■■■□ 3.55
COL9A3-213ENST00000489045 PREX2Q70Z35 1606 aa37.2■■■■□ 3.55
COL9A3-213ENST00000489045 MAGI2Q86UL8 1455 aa37.18■■■■□ 3.54
COL9A3-213ENST00000489045 YEATS2Q9ULM3 1422 aa37.18■■■■□ 3.54
COL9A3-213ENST00000489045 ARID4BQ4LE39 1312 aaPredicted RBP37.16■■■■□ 3.54
COL9A3-213ENST00000489045 SIGLEC1Q9BZZ2 1709 aa37.14■■■■□ 3.54
COL9A3-213ENST00000489045 CDC42BPAQ5VT25 1732 aa37.13■■■■□ 3.54
COL9A3-213ENST00000489045 MADDQ8WXG6 1647 aa37.13■■■■□ 3.53
COL9A3-213ENST00000489045 HECW2Q9P2P5 1572 aa37.12■■■■□ 3.53
COL9A3-213ENST00000489045 CEP162Q5TB80 1403 aa37.12■■■■□ 3.53
COL9A3-213ENST00000489045 PTPRMP28827 1452 aa37.08■■■■□ 3.53
COL9A3-213ENST00000489045 ZNF518AQ6AHZ1 1483 aa37.07■■■■□ 3.53
COL9A3-213ENST00000489045 KDM5CP41229 1560 aa37.06■■■■□ 3.52
COL9A3-213ENST00000489045 ABCC1P33527 1531 aa37.04■■■■□ 3.52
COL9A3-213ENST00000489045 RIMS1Q86UR5 1692 aaKnown RBP37.02■■■■□ 3.52
COL9A3-213ENST00000489045 ITSN2Q9NZM3 1697 aa37.02■■■■□ 3.52
COL9A3-213ENST00000489045 ATP10AO60312 1499 aa36.98■■■■□ 3.51
COL9A3-213ENST00000489045 AFAP1Q8N556 730 aa36.97■■■■□ 3.51
COL9A3-213ENST00000489045 ARHGEF12Q9NZN5 1544 aa36.96■■■■□ 3.51
COL9A3-213ENST00000489045 C9orf84Q5VXU9 1444 aa36.95■■■■□ 3.51
COL9A3-213ENST00000489045 GPATCH8Q9UKJ3 1502 aaKnown RBP36.93■■■■□ 3.5
COL9A3-213ENST00000489045 MTUS2Q5JR59 1369 aa36.92■■■■□ 3.5
COL9A3-213ENST00000489045 SAMD9LQ8IVG5 1584 aa36.91■■■■□ 3.5
COL9A3-213ENST00000489045 TRAPPC8Q9Y2L5 1435 aa36.91■■■■□ 3.5
COL9A3-213ENST00000489045 FER1L4A9Z1Z3 1794 aa36.91■■■■□ 3.5
COL9A3-213ENST00000489045 DIP2CQ9Y2E4 1556 aa36.91■■■■□ 3.5
COL9A3-213ENST00000489045 ABCA6Q8N139 1617 aa36.89■■■■□ 3.5
COL9A3-213ENST00000489045 LOC105371045A0A1W2PR82 267 aa36.88■■■■□ 3.49
COL9A3-213ENST00000489045 EHBP1L1Q8N3D4 1523 aa36.88■■■■□ 3.49
COL9A3-213ENST00000489045 MLH3Q9UHC1 1453 aa36.87■■■■□ 3.49
COL9A3-213ENST00000489045 MLECQ14165 292 aa36.86■■■■□ 3.49
COL9A3-213ENST00000489045 MYT1LQ9UL68 1186 aa36.86■■■■□ 3.49
COL9A3-213ENST00000489045 SYCP2Q9BX26 1530 aa36.84■■■■□ 3.49
COL9A3-213ENST00000489045 CCNB3Q8WWL7 1395 aa36.83■■■■□ 3.49
COL9A3-213ENST00000489045 ZNF777Q9ULD5 760 aaPredicted RBP36.83■■■■□ 3.49
COL9A3-213ENST00000489045 REREQ9P2R6 1566 aa36.82■■■■□ 3.48
COL9A3-213ENST00000489045 KIDINS220Q9ULH0 1771 aa36.81■■■■□ 3.48
COL9A3-213ENST00000489045 TIAM1Q13009 1591 aa36.8■■■■□ 3.48
COL9A3-213ENST00000489045 CFDP1Q9UEE9 299 aaPredicted RBP36.76■■■■□ 3.48
COL9A3-213ENST00000489045 PLEKHH2Q8IVE3 1493 aa36.73■■■■□ 3.47
COL9A3-213ENST00000489045 VPS8Q8N3P4 1428 aa36.72■■■■□ 3.47
COL9A3-213ENST00000489045 PLPPR3Q6T4P5 718 aa36.71■■■■□ 3.47
COL9A3-213ENST00000489045 KIAA1107Q9UPP5 1409 aa36.7■■■■□ 3.47
COL9A3-213ENST00000489045 HNRNPMP52272 730 aaKnown RBP eCLIP36.7■■■■□ 3.47
COL9A3-213ENST00000489045 SUPT6HQ7KZ85 1726 aaKnown RBP36.7■■■■□ 3.47
COL9A3-213ENST00000489045 LMTK3Q96Q04 1460 aa36.69■■■■□ 3.46
COL9A3-213ENST00000489045 AGLP35573 1532 aa36.67■■■■□ 3.46
COL9A3-213ENST00000489045 INO80Q9ULG1 1556 aaPredicted RBP36.65■■■■□ 3.46
COL9A3-213ENST00000489045 ATP7AQ04656 1500 aa36.63■■■■□ 3.45
COL9A3-213ENST00000489045 NCOA2Q15596 1464 aa36.62■■■■□ 3.45
COL9A3-213ENST00000489045 SPAG9O60271 1321 aaKnown RBP36.62■■■■□ 3.45
COL9A3-213ENST00000489045 ZNF644Q9H582 1327 aaPredicted RBP36.58■■■■□ 3.45
COL9A3-213ENST00000489045 LRRC9Q6ZRR7 1453 aa36.53■■■■□ 3.44
COL9A3-213ENST00000489045 MBD5Q9P267 1494 aa36.53■■■■□ 3.44
COL9A3-213ENST00000489045 PREX1Q8TCU6 1659 aa36.52■■■■□ 3.44
COL9A3-213ENST00000489045 PLXNC1O60486 1568 aa36.5■■■■□ 3.43
COL9A3-213ENST00000489045 CEBPAP49715 358 aaPredicted RBP36.5■■■■□ 3.43
COL9A3-213ENST00000489045 C3P01024 1663 aa36.5■■■■□ 3.43
COL9A3-213ENST00000489045 MAP3K1Q13233 1512 aa36.49■■■■□ 3.43
COL9A3-213ENST00000489045 ADGBQ8N7X0 1667 aa36.48■■■■□ 3.43
COL9A3-213ENST00000489045 CAMSAP2Q08AD1 1489 aa36.48■■■■□ 3.43
COL9A3-213ENST00000489045 A2MP01023 1474 aa36.46■■■■□ 3.43
COL9A3-213ENST00000489045 HSPA2P54652 639 aa36.44■■■■□ 3.42
COL9A3-213ENST00000489045 ESF1Q9H501 851 aaKnown RBP36.42■■■■□ 3.42
COL9A3-213ENST00000489045 CCDC141Q6ZP82 1450 aa36.4■■■■□ 3.42
COL9A3-213ENST00000489045 CNTLNQ9NXG0 1405 aa36.39■■■■□ 3.42
COL9A3-213ENST00000489045 MROH2AA6NES4 1674 aa36.39■■■■□ 3.42
COL9A3-213ENST00000489045 SETD1BQ9UPS6 1966 aaKnown RBP36.38■■■■□ 3.42
COL9A3-213ENST00000489045 KANK4Q5T7N3 995 aaPredicted RBP36.38■■■■□ 3.41
COL9A3-213ENST00000489045 RTEL1-TNFRSF6BF6WH68 1400 aa36.37■■■■□ 3.41
COL9A3-213ENST00000489045 ARHGEF5Q12774 1597 aa36.34■■■■□ 3.41
COL9A3-213ENST00000489045 CLTCQ00610 1675 aaKnown RBP36.32■■■■□ 3.41
COL9A3-213ENST00000489045 UHRF1BP1Q6BDS2 1440 aa36.31■■■■□ 3.4
COL9A3-213ENST00000489045 ILDR1Q86SU0 546 aaPredicted RBP36.29■■■■□ 3.4
COL9A3-213ENST00000489045 RSPH4AQ5TD94 716 aa36.27■■■■□ 3.4
COL9A3-213ENST00000489045 MYOM3Q5VTT5 1437 aa36.25■■■■□ 3.39
COL9A3-213ENST00000489045 GGT6Q6P531 493 aa36.23■■■■□ 3.39
COL9A3-213ENST00000489045 DHX29Q7Z478 1369 aaKnown RBP36.23■■■■□ 3.39
COL9A3-213ENST00000489045 ZMYM3Q14202 1370 aa36.21■■■■□ 3.39
COL9A3-213ENST00000489045 MIA2Q96PC5 1412 aa36.21■■■■□ 3.39
COL9A3-213ENST00000489045 APLP2Q06481 763 aa36.2■■■■□ 3.39
COL9A3-213ENST00000489045 STRCQ7RTU9 1775 aa36.18■■■■□ 3.38
COL9A3-213ENST00000489045 NPATQ14207 1427 aa36.17■■■■□ 3.38
COL9A3-213ENST00000489045 MAST1Q9Y2H9 1570 aa36.17■■■■□ 3.38
COL9A3-213ENST00000489045 TSPY4P0CV99 314 aa36.15■■■■□ 3.38
COL9A3-213ENST00000489045 TSPY10P0CW01 314 aa36.15■■■■□ 3.38
COL9A3-213ENST00000489045 PPP6R1Q9UPN7 881 aa36.12■■■■□ 3.37
COL9A3-213ENST00000489045 KIF3BO15066 747 aa36.09■■■■□ 3.37
COL9A3-213ENST00000489045 MYO3AQ8NEV4 1616 aa36.08■■■■□ 3.37
COL9A3-213ENST00000489045 PTPN23Q9H3S7 1636 aa36.08■■■■□ 3.37
COL9A3-213ENST00000489045 PTPRKQ15262 1439 aa36.08■■■■□ 3.37
COL9A3-213ENST00000489045 KDM5DQ9BY66 1539 aa36.04■■■■□ 3.36
COL9A3-213ENST00000489045 CROCC2H7BZ55 1655 aa36.04■■■■□ 3.36
COL9A3-213ENST00000489045 ZNF142P52746 1687 aaPredicted RBP36.04■■■■□ 3.36
COL9A3-213ENST00000489045 FAM135AQ9P2D6 1515 aa36.03■■■■□ 3.36
COL9A3-213ENST00000489045 RNF17Q9BXT8 1623 aaKnown RBP35.99■■■■□ 3.35
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms