RNA–Protein interactions for RNA: ENST00000489028.1

RFC4-213, Transcript of replication factor C subunit 4, humanhuman

TSL 3

Gene RFC4, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-213ENST00000489028 KIF3CO14782 793 aa10.13□□□□□ -0.79
RFC4-213ENST00000489028 C2orf72A6NCS6 295 aa10.11□□□□□ -0.79
RFC4-213ENST00000489028 PLCB2Q00722 1185 aa10.11□□□□□ -0.79
RFC4-213ENST00000489028 NCKAP5LQ9HCH0 1330 aa10.1□□□□□ -0.79
RFC4-213ENST00000489028 CRISPLD2Q9H0B8 497 aa10.08□□□□□ -0.8
RFC4-213ENST00000489028 TSHZ2Q9NRE2 1034 aa10.07□□□□□ -0.8
RFC4-213ENST00000489028 TMC2Q8TDI7 906 aa10.06□□□□□ -0.8
RFC4-213ENST00000489028 GPHNQ9NQX3 736 aaPredicted RBP10.06□□□□□ -0.8
RFC4-213ENST00000489028 HOXB3P14651 431 aaPredicted RBP10.05□□□□□ -0.8
RFC4-213ENST00000489028 DSG2Q14126 1118 aa10.03□□□□□ -0.8
RFC4-213ENST00000489028 LCE2DQ5TA82 110 aaPredicted RBP10.03□□□□□ -0.8
RFC4-213ENST00000489028 FOXK1P85037 733 aa10.01□□□□□ -0.81
RFC4-213ENST00000489028 LARP6Q9BRS8 491 aaKnown RBP10.01□□□□□ -0.81
RFC4-213ENST00000489028 PDE4AP27815 886 aa10□□□□□ -0.81
RFC4-213ENST00000489028 MFSD10Q14728 455 aa9.99□□□□□ -0.81
RFC4-213ENST00000489028 PLPP6Q8IY26 295 aa9.99□□□□□ -0.81
RFC4-213ENST00000489028 FAM163AQ96GL9 167 aaPredicted RBP9.98□□□□□ -0.81
RFC4-213ENST00000489028 SNPHO15079 494 aa9.97□□□□□ -0.81
RFC4-213ENST00000489028 ST18O60284 1047 aa9.97□□□□□ -0.81
RFC4-213ENST00000489028 PPP1R15BQ5SWA1 713 aa9.97□□□□□ -0.81
RFC4-213ENST00000489028 DDX27Q96GQ7 796 aaKnown RBP9.96□□□□□ -0.82
RFC4-213ENST00000489028 HAP1P54257 671 aaPredicted RBP9.94□□□□□ -0.82
RFC4-213ENST00000489028 DOK7Q18PE1 504 aa9.94□□□□□ -0.82
RFC4-213ENST00000489028 SLC34A2O95436 690 aa9.91□□□□□ -0.82
RFC4-213ENST00000489028 KHSRPQ92945 711 aaKnown RBP eCLIP9.9□□□□□ -0.823e-6■■□□□ 13.8
RFC4-213ENST00000489028 GPR153Q6NV75 609 aa9.89□□□□□ -0.83
RFC4-213ENST00000489028 ZNF710Q8N1W2 664 aa9.89□□□□□ -0.83
RFC4-213ENST00000489028 ARSIQ5FYB1 569 aa9.88□□□□□ -0.83
RFC4-213ENST00000489028 EMILIN3Q9NT22 766 aa9.88□□□□□ -0.83
RFC4-213ENST00000489028 HOXB1P14653 301 aaPredicted RBP9.87□□□□□ -0.83
RFC4-213ENST00000489028 CAMK2BQ13554 666 aa9.87□□□□□ -0.83
RFC4-213ENST00000489028 OXER1Q8TDS5 423 aa9.87□□□□□ -0.83
RFC4-213ENST00000489028 PTCD2Q8WV60 388 aaKnown RBP9.87□□□□□ -0.83
RFC4-213ENST00000489028 MARVELD3Q96A59 401 aa9.87□□□□□ -0.83
RFC4-213ENST00000489028 ZSWIM6Q9HCJ5 1215 aa9.87□□□□□ -0.83
RFC4-213ENST00000489028 PCDHGA4Q9Y5G9 962 aa9.87□□□□□ -0.83
RFC4-213ENST00000489028 RIMBP2O15034 1052 aa9.86□□□□□ -0.83
RFC4-213ENST00000489028 UPF1Q92900 1129 aaKnown RBP eCLIP9.86□□□□□ -0.83
RFC4-213ENST00000489028 KDM2AQ9Y2K7 1162 aa9.86□□□□□ -0.83
RFC4-213ENST00000489028 KDM4FA0A1W2PPD8 638 aa9.83□□□□□ -0.84
RFC4-213ENST00000489028 NUDT7P0C024 238 aa9.82□□□□□ -0.84
RFC4-213ENST00000489028 WDR70Q9NW82 654 aa9.82□□□□□ -0.84
RFC4-213ENST00000489028 E2F4Q16254 413 aa9.81□□□□□ -0.84
RFC4-213ENST00000489028 POTEB3A0JP26 581 aa9.8□□□□□ -0.84
RFC4-213ENST00000489028 POTEMA6NI47 508 aa9.8□□□□□ -0.84
RFC4-213ENST00000489028 EMP3P54852 163 aa9.8□□□□□ -0.84
RFC4-213ENST00000489028 POTEBQ6S5H4 581 aa9.8□□□□□ -0.84
RFC4-213ENST00000489028 POTEGQ6S5H5 508 aa9.8□□□□□ -0.84
RFC4-213ENST00000489028 DPYSL4O14531 572 aa9.78□□□□□ -0.84
RFC4-213ENST00000489028 KCNV2Q8TDN2 545 aa9.77□□□□□ -0.85
RFC4-213ENST00000489028 FAM205CA6NFA0 338 aa9.76□□□□□ -0.85
RFC4-213ENST00000489028 VSIG10Q8N0Z9 540 aa9.76□□□□□ -0.85
RFC4-213ENST00000489028 TBC1D12O60347 775 aa9.75□□□□□ -0.85
RFC4-213ENST00000489028 LHX6Q9UPM6 363 aa9.75□□□□□ -0.85
RFC4-213ENST00000489028 ZNF316A6NFI3 1004 aaPredicted RBP9.74□□□□□ -0.85
RFC4-213ENST00000489028 EVI5O60447 810 aa9.74□□□□□ -0.85
RFC4-213ENST00000489028 MAP3K9P80192 1104 aa9.74□□□□□ -0.85
RFC4-213ENST00000489028 HS3ST6Q96QI5 342 aa9.74□□□□□ -0.85
RFC4-213ENST00000489028 ARIH1Q9Y4X5 557 aaPredicted RBP9.73□□□□□ -0.85
RFC4-213ENST00000489028 ERBB3P21860 1342 aa9.73□□□□□ -0.85
RFC4-213ENST00000489028 VARS2Q5ST30 1063 aaKnown RBP9.72□□□□□ -0.85
RFC4-213ENST00000489028 ANO8Q9HCE9 1232 aaPredicted RBP9.71□□□□□ -0.86
RFC4-213ENST00000489028 PDIA6Q15084 440 aa9.69□□□□□ -0.86
RFC4-213ENST00000489028 ARHGEF1Q92888 912 aaKnown RBP9.67□□□□□ -0.86
RFC4-213ENST00000489028 P3H3Q8IVL6 736 aa9.65□□□□□ -0.86
RFC4-213ENST00000489028 CDAN1Q8IWY9 1227 aa9.65□□□□□ -0.86
RFC4-213ENST00000489028 SPDYE16A6NNV3 312 aaPredicted RBP9.64□□□□□ -0.87
RFC4-213ENST00000489028 FOSBP53539 338 aa9.64□□□□□ -0.87
RFC4-213ENST00000489028 SLC24A1O60721 1099 aa9.63□□□□□ -0.87
RFC4-213ENST00000489028 POTEEQ6S8J3 1075 aa9.63□□□□□ -0.87
RFC4-213ENST00000489028 ZNF454Q8N9F8 522 aa9.63□□□□□ -0.87
RFC4-213ENST00000489028 ZNF687Q8N1G0 1237 aa9.62□□□□□ -0.87
RFC4-213ENST00000489028 DDX12PQ92771 950 aa9.62□□□□□ -0.87
RFC4-213ENST00000489028 JPH4Q96JJ6 628 aa9.62□□□□□ -0.87
RFC4-213ENST00000489028 PCDHGA10Q9Y5H3 936 aa9.62□□□□□ -0.87
RFC4-213ENST00000489028 PTGER2P43116 358 aa9.61□□□□□ -0.87
RFC4-213ENST00000489028 KRTAP3-3Q9BYR6 98 aa9.61□□□□□ -0.87
RFC4-213ENST00000489028 KRTAP3-2Q9BYR7 98 aa9.61□□□□□ -0.87
RFC4-213ENST00000489028 PSDA5PKW4 1024 aaPredicted RBP9.6□□□□□ -0.87
RFC4-213ENST00000489028 PPP4R3BQ5MIZ7 849 aa9.6□□□□□ -0.87
RFC4-213ENST00000489028 PRIM1P49642 420 aaKnown RBP9.59□□□□□ -0.87
RFC4-213ENST00000489028 MLLT3P42568 568 aaPredicted RBP9.58□□□□□ -0.88
RFC4-213ENST00000489028 SEMA3EO15041 775 aa9.57□□□□□ -0.88
RFC4-213ENST00000489028 PHF14O94880 888 aa9.57□□□□□ -0.88
RFC4-213ENST00000489028 ADAM33Q9BZ11 813 aa9.57□□□□□ -0.88
RFC4-213ENST00000489028 AXIN2Q9Y2T1 843 aa9.57□□□□□ -0.88
RFC4-213ENST00000489028 GRXCR2A6NFK2 248 aa9.56□□□□□ -0.88
RFC4-213ENST00000489028 ZDHHC16Q969W1 377 aa9.56□□□□□ -0.88
RFC4-213ENST00000489028 TYW1BQ6NUM6 668 aa9.55□□□□□ -0.88
RFC4-213ENST00000489028 PSEN2P49810 448 aa9.54□□□□□ -0.88
RFC4-213ENST00000489028 NBR1Q14596 966 aa9.54□□□□□ -0.88
RFC4-213ENST00000489028 BCL2L12Q9HB09 334 aa9.54□□□□□ -0.88
RFC4-213ENST00000489028 OSBPP22059 807 aa9.53□□□□□ -0.88
RFC4-213ENST00000489028 EPAS1Q99814 870 aa9.53□□□□□ -0.88
RFC4-213ENST00000489028 PCDH10Q9P2E7 1040 aa9.53□□□□□ -0.88
RFC4-213ENST00000489028 PBX2P40425 430 aa9.52□□□□□ -0.89
RFC4-213ENST00000489028 DMRTA1Q5VZB9 504 aa9.52□□□□□ -0.89
RFC4-213ENST00000489028 RBM33Q96EV2 1170 aaKnown RBP9.52□□□□□ -0.89
RFC4-213ENST00000489028 KCNK17Q96T54 332 aa9.52□□□□□ -0.89
RFC4-213ENST00000489028 TESPA1A2RU30 521 aaPredicted RBP9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms