RNA–Protein interactions for RNA: ENST00000488774.1

PTPRD-212, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 3

Gene PTPRD, Length 420 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-212ENST00000488774 FANCAO15360 1455 aa10.49□□□□□ -0.73
PTPRD-212ENST00000488774 RAPGEF3O95398 923 aa10.48□□□□□ -0.73
PTPRD-212ENST00000488774 GPATCH8Q9UKJ3 1502 aaKnown RBP10.48□□□□□ -0.73
PTPRD-212ENST00000488774 CFAP74Q9C0B2 1584 aa10.48□□□□□ -0.73
PTPRD-212ENST00000488774 AKNAQ7Z591 1439 aa10.47□□□□□ -0.73
PTPRD-212ENST00000488774 NEO1Q92859 1461 aa10.47□□□□□ -0.73
PTPRD-212ENST00000488774 EHBP1L1Q8N3D4 1523 aa10.47□□□□□ -0.73
PTPRD-212ENST00000488774 ABCC1P33527 1531 aa10.46□□□□□ -0.74
PTPRD-212ENST00000488774 ARHGAP5Q13017 1502 aa10.46□□□□□ -0.74
PTPRD-212ENST00000488774 SUPT6HQ7KZ85 1726 aaKnown RBP10.46□□□□□ -0.74
PTPRD-212ENST00000488774 LRRC9Q6ZRR7 1453 aa10.45□□□□□ -0.74
PTPRD-212ENST00000488774 KIDINS220Q9ULH0 1771 aa10.44□□□□□ -0.74
PTPRD-212ENST00000488774 ADGRL1O94910 1474 aa10.43□□□□□ -0.74
PTPRD-212ENST00000488774 NCOA2Q15596 1464 aa10.43□□□□□ -0.74
PTPRD-212ENST00000488774 YEATS2Q9ULM3 1422 aa10.43□□□□□ -0.74
PTPRD-212ENST00000488774 TRAPPC8Q9Y2L5 1435 aa10.43□□□□□ -0.74
PTPRD-212ENST00000488774 ZNF644Q9H582 1327 aaPredicted RBP10.43□□□□□ -0.74
PTPRD-212ENST00000488774 ABCA6Q8N139 1617 aa10.43□□□□□ -0.74
PTPRD-212ENST00000488774 ZMYM4Q5VZL5 1548 aa10.43□□□□□ -0.74
PTPRD-212ENST00000488774 SYCP2Q9BX26 1530 aa10.43□□□□□ -0.74
PTPRD-212ENST00000488774 KDM5CP41229 1560 aa10.42□□□□□ -0.74
PTPRD-212ENST00000488774 MAP3K1Q13233 1512 aa10.42□□□□□ -0.74
PTPRD-212ENST00000488774 ARHGEF40Q8TER5 1519 aa10.42□□□□□ -0.74
PTPRD-212ENST00000488774 POGZQ7Z3K3 1410 aa10.41□□□□□ -0.74
PTPRD-212ENST00000488774 SCAPERQ9BY12 1400 aa10.41□□□□□ -0.74
PTPRD-212ENST00000488774 MTUS2Q5JR59 1369 aa10.41□□□□□ -0.74
PTPRD-212ENST00000488774 KDM4FA0A1W2PPD8 638 aa10.41□□□□□ -0.74
PTPRD-212ENST00000488774 DENND4BO75064 1496 aaPredicted RBP10.4□□□□□ -0.74
PTPRD-212ENST00000488774 CDK11AQ9UQ88 783 aaPredicted RBP10.39□□□□□ -0.75
PTPRD-212ENST00000488774 DIP2CQ9Y2E4 1556 aa10.39□□□□□ -0.75
PTPRD-212ENST00000488774 ADGBQ8N7X0 1667 aa10.38□□□□□ -0.75
PTPRD-212ENST00000488774 AFAP1Q8N556 730 aa10.38□□□□□ -0.75
PTPRD-212ENST00000488774 HECW2Q9P2P5 1572 aa10.38□□□□□ -0.75
PTPRD-212ENST00000488774 BCORL1Q5H9F3 1711 aa10.38□□□□□ -0.75
PTPRD-212ENST00000488774 PHLDB1Q86UU1 1377 aa10.38□□□□□ -0.75
PTPRD-212ENST00000488774 ADAMTSL3P82987 1691 aa10.38□□□□□ -0.75
PTPRD-212ENST00000488774 PPARGC1BQ86YN6 1023 aaKnown RBP10.37□□□□□ -0.75
PTPRD-212ENST00000488774 INO80Q9ULG1 1556 aaPredicted RBP10.37□□□□□ -0.75
PTPRD-212ENST00000488774 ZFYVE16Q7Z3T8 1539 aa10.37□□□□□ -0.75
PTPRD-212ENST00000488774 CAMSAP2Q08AD1 1489 aa10.36□□□□□ -0.75
PTPRD-212ENST00000488774 MBD5Q9P267 1494 aa10.36□□□□□ -0.75
PTPRD-212ENST00000488774 HNRNPMP52272 730 aaKnown RBP eCLIP10.36□□□□□ -0.75
PTPRD-212ENST00000488774 EFCAB2Q5VUJ9 269 aa10.36□□□□□ -0.75
PTPRD-212ENST00000488774 CCNB3Q8WWL7 1395 aa10.36□□□□□ -0.75
PTPRD-212ENST00000488774 ZNF777Q9ULD5 760 aaPredicted RBP10.35□□□□□ -0.75
PTPRD-212ENST00000488774 MADDQ8WXG6 1647 aa10.35□□□□□ -0.75
PTPRD-212ENST00000488774 CROCC2H7BZ55 1655 aa10.34□□□□□ -0.75
PTPRD-212ENST00000488774 PTPN23Q9H3S7 1636 aa10.33□□□□□ -0.76
PTPRD-212ENST00000488774 ZNF518AQ6AHZ1 1483 aa10.33□□□□□ -0.76
PTPRD-212ENST00000488774 RIMS1Q86UR5 1692 aaKnown RBP10.33□□□□□ -0.76
PTPRD-212ENST00000488774 FER1L4A9Z1Z3 1794 aa10.32□□□□□ -0.76
PTPRD-212ENST00000488774 CFDP1Q9UEE9 299 aaPredicted RBP10.31□□□□□ -0.76
PTPRD-212ENST00000488774 ATP7AQ04656 1500 aa10.31□□□□□ -0.76
PTPRD-212ENST00000488774 MYOM3Q5VTT5 1437 aa10.31□□□□□ -0.76
PTPRD-212ENST00000488774 ARHGEF5Q12774 1597 aa10.31□□□□□ -0.76
PTPRD-212ENST00000488774 MLH3Q9UHC1 1453 aa10.3□□□□□ -0.76
PTPRD-212ENST00000488774 KIAA1107Q9UPP5 1409 aa10.3□□□□□ -0.76
PTPRD-212ENST00000488774 PLXNC1O60486 1568 aa10.3□□□□□ -0.76
PTPRD-212ENST00000488774 ATP10AO60312 1499 aa10.29□□□□□ -0.76
PTPRD-212ENST00000488774 MAGI2Q86UL8 1455 aa10.29□□□□□ -0.76
PTPRD-212ENST00000488774 REREQ9P2R6 1566 aa10.28□□□□□ -0.76
PTPRD-212ENST00000488774 DNMT1P26358 1616 aaKnown RBP10.28□□□□□ -0.76
PTPRD-212ENST00000488774 FGD6Q6ZV73 1430 aa10.27□□□□□ -0.77
PTPRD-212ENST00000488774 TCOF1Q13428 1488 aaKnown RBP10.27□□□□□ -0.77
PTPRD-212ENST00000488774 MAST1Q9Y2H9 1570 aa10.26□□□□□ -0.77
PTPRD-212ENST00000488774 C9orf84Q5VXU9 1444 aa10.26□□□□□ -0.77
PTPRD-212ENST00000488774 PTPRKQ15262 1439 aa10.25□□□□□ -0.77
PTPRD-212ENST00000488774 C3P01024 1663 aa10.25□□□□□ -0.77
PTPRD-212ENST00000488774 CCDC141Q6ZP82 1450 aa10.25□□□□□ -0.77
PTPRD-212ENST00000488774 PLEKHH2Q8IVE3 1493 aa10.25□□□□□ -0.77
PTPRD-212ENST00000488774 CFAP65Q6ZU64 1925 aaKnown RBP10.25□□□□□ -0.77
PTPRD-212ENST00000488774 CLTCQ00610 1675 aaKnown RBP10.25□□□□□ -0.77
PTPRD-212ENST00000488774 ABCC5O15440 1437 aa10.24□□□□□ -0.77
PTPRD-212ENST00000488774 MROH1Q8NDA8 1641 aa10.24□□□□□ -0.77
PTPRD-212ENST00000488774 MIA2Q96PC5 1412 aa10.24□□□□□ -0.77
PTPRD-212ENST00000488774 MLECQ14165 292 aa10.23□□□□□ -0.77
PTPRD-212ENST00000488774 SPAG9O60271 1321 aaKnown RBP10.23□□□□□ -0.77
PTPRD-212ENST00000488774 PTPRMP28827 1452 aa10.23□□□□□ -0.77
PTPRD-212ENST00000488774 AGLP35573 1532 aa10.23□□□□□ -0.77
PTPRD-212ENST00000488774 CEP152O94986 1710 aa10.22□□□□□ -0.77
PTPRD-212ENST00000488774 DAPK1P53355 1430 aa10.22□□□□□ -0.77
PTPRD-212ENST00000488774 ARID4BQ4LE39 1312 aaPredicted RBP10.21□□□□□ -0.78
PTPRD-212ENST00000488774 A2MP01023 1474 aa10.21□□□□□ -0.78
PTPRD-212ENST00000488774 RTEL1-TNFRSF6BF6WH68 1400 aa10.2□□□□□ -0.78
PTPRD-212ENST00000488774 RNF17Q9BXT8 1623 aaKnown RBP10.19□□□□□ -0.78
PTPRD-212ENST00000488774 APLP2Q06481 763 aa10.19□□□□□ -0.78
PTPRD-212ENST00000488774 CEBPAP49715 358 aaPredicted RBP10.18□□□□□ -0.78
PTPRD-212ENST00000488774 MYT1LQ9UL68 1186 aa10.18□□□□□ -0.78
PTPRD-212ENST00000488774 MROH2AA6NES4 1674 aa10.18□□□□□ -0.78
PTPRD-212ENST00000488774 CHIC2Q9UKJ5 165 aa10.17□□□□□ -0.78
PTPRD-212ENST00000488774 DEPDC5O75140 1603 aa10.17□□□□□ -0.78
PTPRD-212ENST00000488774 SHANK2Q9UPX8 1470 aa10.17□□□□□ -0.78
PTPRD-212ENST00000488774 PLPPR3Q6T4P5 718 aa10.16□□□□□ -0.78
PTPRD-212ENST00000488774 DHX29Q7Z478 1369 aaKnown RBP10.15□□□□□ -0.78
PTPRD-212ENST00000488774 EIF2AK4Q9P2K8 1649 aaKnown RBP10.15□□□□□ -0.78
PTPRD-212ENST00000488774 FAM50AQ14320 339 aaKnown RBP10.14□□□□□ -0.79
PTPRD-212ENST00000488774 ADGRL2O95490 1459 aa10.14□□□□□ -0.79
PTPRD-212ENST00000488774 RRBP1Q9P2E9 1410 aaKnown RBP10.14□□□□□ -0.79
PTPRD-212ENST00000488774 PREX1Q8TCU6 1659 aa10.13□□□□□ -0.79
PTPRD-212ENST00000488774 LMTK3Q96Q04 1460 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms