RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 ARSIQ5FYB1 569 aa12.81□□□□□ -0.36
SMC4-220ENST00000488017 ZNF316A6NFI3 1004 aaPredicted RBP12.8□□□□□ -0.36
SMC4-220ENST00000488017 SOX12O15370 315 aa12.77□□□□□ -0.37
SMC4-220ENST00000488017 MS4A4AQ96JQ5 239 aa12.74□□□□□ -0.37
SMC4-220ENST00000488017 PLA2G2EQ9NZK7 142 aa12.74□□□□□ -0.37
SMC4-220ENST00000488017 PBX2P40425 430 aa12.72□□□□□ -0.37
SMC4-220ENST00000488017 KHSRPQ92945 711 aaKnown RBP eCLIP12.71□□□□□ -0.372e-9■■■■□ 20.4
SMC4-220ENST00000488017 HCSTQ9UBK5 93 aa12.69□□□□□ -0.38
SMC4-220ENST00000488017 RIOK3O14730 519 aaKnown RBP12.66□□□□□ -0.38
SMC4-220ENST00000488017 PHF8Q9UPP1 1060 aa12.65□□□□□ -0.38
SMC4-220ENST00000488017 VGFO15240 615 aaPredicted RBP12.62□□□□□ -0.39
SMC4-220ENST00000488017 POTEEQ6S8J3 1075 aa12.62□□□□□ -0.39
SMC4-220ENST00000488017 RNF25Q96BH1 459 aaPredicted RBP12.6□□□□□ -0.39
SMC4-220ENST00000488017 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.58□□□□□ -0.4
SMC4-220ENST00000488017 ZFP91Q96JP5 570 aaPredicted RBP12.58□□□□□ -0.4
SMC4-220ENST00000488017 AXIN2Q9Y2T1 843 aa12.58□□□□□ -0.4
SMC4-220ENST00000488017 NUDT7P0C024 238 aa12.57□□□□□ -0.4
SMC4-220ENST00000488017 LHX6Q9UPM6 363 aa12.56□□□□□ -0.4
SMC4-220ENST00000488017 KIF3CO14782 793 aa12.54□□□□□ -0.4
SMC4-220ENST00000488017 NLRP6P59044 892 aa12.53□□□□□ -0.4
SMC4-220ENST00000488017 ADGRD1Q6QNK2 874 aa12.53□□□□□ -0.4
SMC4-220ENST00000488017 TAOK2Q9UL54 1235 aa12.52□□□□□ -0.41
SMC4-220ENST00000488017 SLC34A2O95436 690 aa12.51□□□□□ -0.41
SMC4-220ENST00000488017 FBXO22Q8NEZ5 403 aa12.5□□□□□ -0.41
SMC4-220ENST00000488017 PCDHGA4Q9Y5G9 962 aa12.5□□□□□ -0.41
SMC4-220ENST00000488017 C2orf72A6NCS6 295 aa12.49□□□□□ -0.41
SMC4-220ENST00000488017 ARHGAP33O14559 1287 aa12.49□□□□□ -0.41
SMC4-220ENST00000488017 TK2O00142 265 aa12.45□□□□□ -0.42
SMC4-220ENST00000488017 PSDA5PKW4 1024 aaPredicted RBP12.43□□□□□ -0.42
SMC4-220ENST00000488017 HRO43593 1189 aa12.42□□□□□ -0.42
SMC4-220ENST00000488017 BCL11BQ9C0K0 894 aaPredicted RBP12.42□□□□□ -0.42
SMC4-220ENST00000488017 RGS20O76081 388 aa12.38□□□□□ -0.43
SMC4-220ENST00000488017 STK24Q9Y6E0 443 aa12.38□□□□□ -0.43
SMC4-220ENST00000488017 MFRPQ9BY79 579 aa12.37□□□□□ -0.43
SMC4-220ENST00000488017 DMRTA1Q5VZB9 504 aa12.35□□□□□ -0.43
SMC4-220ENST00000488017 KCTD12Q96CX2 325 aaKnown RBP12.35□□□□□ -0.43
SMC4-220ENST00000488017 KDM4FA0A1W2PPD8 638 aa12.34□□□□□ -0.43
SMC4-220ENST00000488017 TMC2Q8TDI7 906 aa12.33□□□□□ -0.44
SMC4-220ENST00000488017 STK25O00506 426 aa12.32□□□□□ -0.44
SMC4-220ENST00000488017 ECM2O94769 699 aaPredicted RBP12.32□□□□□ -0.44
SMC4-220ENST00000488017 PSEN2P49810 448 aa12.32□□□□□ -0.44
SMC4-220ENST00000488017 IFFO2Q5TF58 517 aa12.31□□□□□ -0.44
SMC4-220ENST00000488017 IRX2Q9BZI1 471 aaPredicted RBP12.29□□□□□ -0.44
SMC4-220ENST00000488017 STAC3Q96MF2 364 aa12.28□□□□□ -0.44
SMC4-220ENST00000488017 PTCD2Q8WV60 388 aaKnown RBP12.26□□□□□ -0.45
SMC4-220ENST00000488017 PKD2Q13563 968 aa12.23□□□□□ -0.45
SMC4-220ENST00000488017 PPP4R3BQ5MIZ7 849 aa12.23□□□□□ -0.45
SMC4-220ENST00000488017 RGL2O15211 777 aa12.21□□□□□ -0.45
SMC4-220ENST00000488017 PTPN5P54829 565 aa12.2□□□□□ -0.46
SMC4-220ENST00000488017 A0A0G2JS52 829 aa12.18□□□□□ -0.46
SMC4-220ENST00000488017 VPS9D1Q9Y2B5 631 aa12.17□□□□□ -0.46
SMC4-220ENST00000488017 KCNH8Q96L42 1107 aa12.16□□□□□ -0.46
SMC4-220ENST00000488017 KCNK17Q96T54 332 aa12.16□□□□□ -0.46
SMC4-220ENST00000488017 FOXK1P85037 733 aa12.11□□□□□ -0.47
SMC4-220ENST00000488017 THSD4Q6ZMP0 1018 aa12.11□□□□□ -0.47
SMC4-220ENST00000488017 SLC4A5Q9BY07 1137 aa12.11□□□□□ -0.47
SMC4-220ENST00000488017 TBC1D12O60347 775 aa12.1□□□□□ -0.47
SMC4-220ENST00000488017 PPP1R37O75864 691 aa12.09□□□□□ -0.47
SMC4-220ENST00000488017 PLPP6Q8IY26 295 aa12.09□□□□□ -0.47
SMC4-220ENST00000488017 BHMG1C9JSJ3 638 aaPredicted RBP12.07□□□□□ -0.48
SMC4-220ENST00000488017 GPHNQ9NQX3 736 aaPredicted RBP12.04□□□□□ -0.48
SMC4-220ENST00000488017 HS6ST3Q8IZP7 471 aa12.02□□□□□ -0.49
SMC4-220ENST00000488017 BCL2L12Q9HB09 334 aa12.02□□□□□ -0.49
SMC4-220ENST00000488017 WNT2BQ93097 391 aa12.01□□□□□ -0.49
SMC4-220ENST00000488017 GOLGA8CPA6NN73 597 aa12□□□□□ -0.49
SMC4-220ENST00000488017 DSG2Q14126 1118 aa11.99□□□□□ -0.49
SMC4-220ENST00000488017 MRPL50Q8N5N7 158 aaKnown RBP11.98□□□□□ -0.49
SMC4-220ENST00000488017 Q6ZNB5 142 aa11.97□□□□□ -0.49
SMC4-220ENST00000488017 ZNF454Q8N9F8 522 aa11.97□□□□□ -0.49
SMC4-220ENST00000488017 ZBED2Q9BTP6 218 aa11.96□□□□□ -0.49
SMC4-220ENST00000488017 OXER1Q8TDS5 423 aa11.95□□□□□ -0.5
SMC4-220ENST00000488017 ITGBL1O95965 494 aaPredicted RBP11.94□□□□□ -0.5
SMC4-220ENST00000488017 PTPREP23469 700 aa11.94□□□□□ -0.5
SMC4-220ENST00000488017 FOSBP53539 338 aa11.91□□□□□ -0.5
SMC4-220ENST00000488017 NBPF3Q9H094 633 aa11.91□□□□□ -0.5
SMC4-220ENST00000488017 DNAJC5Q9H3Z4 198 aa11.9□□□□□ -0.5
SMC4-220ENST00000488017 CHGAP10645 457 aaKnown RBP11.88□□□□□ -0.51
SMC4-220ENST00000488017 RYDENQ9NUL5 291 aaKnown RBP11.88□□□□□ -0.51
SMC4-220ENST00000488017 UPF1Q92900 1129 aaKnown RBP eCLIP11.84□□□□□ -0.51
SMC4-220ENST00000488017 LAPTM4AQ15012 233 aa11.83□□□□□ -0.52
SMC4-220ENST00000488017 JPH4Q96JJ6 628 aa11.83□□□□□ -0.52
SMC4-220ENST00000488017 ANO8Q9HCE9 1232 aaPredicted RBP11.82□□□□□ -0.52
SMC4-220ENST00000488017 ANKK1Q8NFD2 765 aa11.81□□□□□ -0.52
SMC4-220ENST00000488017 NKX1-1Q15270 411 aaPredicted RBP11.8□□□□□ -0.52
SMC4-220ENST00000488017 ZDHHC16Q969W1 377 aa11.8□□□□□ -0.52
SMC4-220ENST00000488017 ADAM33Q9BZ11 813 aa11.8□□□□□ -0.52
SMC4-220ENST00000488017 CRISPLD2Q9H0B8 497 aa11.79□□□□□ -0.52
SMC4-220ENST00000488017 LCE2BO14633 110 aa11.78□□□□□ -0.52
SMC4-220ENST00000488017 NYAP1Q6ZVC0 841 aa11.78□□□□□ -0.52
SMC4-220ENST00000488017 RABGEF1Q9UJ41 708 aa11.77□□□□□ -0.53
SMC4-220ENST00000488017 KCNC4Q03721 635 aa11.75□□□□□ -0.53
SMC4-220ENST00000488017 PPP1R15BQ5SWA1 713 aa11.75□□□□□ -0.53
SMC4-220ENST00000488017 TRAF7Q6Q0C0 670 aa11.75□□□□□ -0.53
SMC4-220ENST00000488017 SOWAHBA6NEL2 793 aa11.74□□□□□ -0.53
SMC4-220ENST00000488017 PPP1R3GB7ZBB8 358 aa11.73□□□□□ -0.53
SMC4-220ENST00000488017 BCAMP50895 628 aa11.73□□□□□ -0.53
SMC4-220ENST00000488017 PDE4AP27815 886 aa11.72□□□□□ -0.53
SMC4-220ENST00000488017 LAPTM4BQ86VI4 370 aa11.72□□□□□ -0.53
SMC4-220ENST00000488017 EVI5O60447 810 aa11.71□□□□□ -0.53
SMC4-220ENST00000488017 GFRA3O60609 400 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms