RNA–Protein interactions for RNA: ENST00000487739.1

CCDC66-221, Transcript of coiled-coil domain containing 66, humanhuman

TSL 3

Gene CCDC66, Length 443 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC66-221ENST00000487739 PPP1R37O75864 691 aa12.24□□□□□ -0.45
CCDC66-221ENST00000487739 RIMBP2O15034 1052 aa12.23□□□□□ -0.45
CCDC66-221ENST00000487739 EMP3P54852 163 aa12.22□□□□□ -0.45
CCDC66-221ENST00000487739 RYDENQ9NUL5 291 aaKnown RBP12.22□□□□□ -0.45
CCDC66-221ENST00000487739 NKX1-1Q15270 411 aaPredicted RBP12.21□□□□□ -0.45
CCDC66-221ENST00000487739 CDAN1Q8IWY9 1227 aa12.2□□□□□ -0.46
CCDC66-221ENST00000487739 C2orf72A6NCS6 295 aa12.17□□□□□ -0.46
CCDC66-221ENST00000487739 KIF3CO14782 793 aa12.17□□□□□ -0.46
CCDC66-221ENST00000487739 HOXB1P14653 301 aaPredicted RBP12.17□□□□□ -0.46
CCDC66-221ENST00000487739 TMC2Q8TDI7 906 aa12.17□□□□□ -0.46
CCDC66-221ENST00000487739 ZSWIM6Q9HCJ5 1215 aa12.17□□□□□ -0.46
CCDC66-221ENST00000487739 AMER1Q5JTC6 1135 aaPredicted RBP12.16□□□□□ -0.46
CCDC66-221ENST00000487739 FAM205CA6NFA0 338 aa12.12□□□□□ -0.47
CCDC66-221ENST00000487739 HS3ST6Q96QI5 342 aa12.11□□□□□ -0.47
CCDC66-221ENST00000487739 GPR153Q6NV75 609 aa12.08□□□□□ -0.48
CCDC66-221ENST00000487739 ERBB3P21860 1342 aa12.07□□□□□ -0.48
CCDC66-221ENST00000487739 GTPBP6O43824 516 aaPredicted RBP12.06□□□□□ -0.48
CCDC66-221ENST00000487739 RTN4Q9NQC3 1192 aaKnown RBP12.05□□□□□ -0.48
CCDC66-221ENST00000487739 POTEB3A0JP26 581 aa12.04□□□□□ -0.48
CCDC66-221ENST00000487739 ARSIQ5FYB1 569 aa12.04□□□□□ -0.48
CCDC66-221ENST00000487739 POTEBQ6S5H4 581 aa12.04□□□□□ -0.48
CCDC66-221ENST00000487739 GPHNQ9NQX3 736 aaPredicted RBP12.04□□□□□ -0.48
CCDC66-221ENST00000487739 SLC34A2O95436 690 aa12.03□□□□□ -0.48
CCDC66-221ENST00000487739 FOXK1P85037 733 aa12.01□□□□□ -0.49
CCDC66-221ENST00000487739 VARS2Q5ST30 1063 aaKnown RBP12□□□□□ -0.49
CCDC66-221ENST00000487739 PLPP6Q8IY26 295 aa11.98□□□□□ -0.49
CCDC66-221ENST00000487739 KHSRPQ92945 711 aaKnown RBP eCLIP11.98□□□□□ -0.49
CCDC66-221ENST00000487739 PCDHGA4Q9Y5G9 962 aa11.98□□□□□ -0.49
CCDC66-221ENST00000487739 DSG2Q14126 1118 aa11.97□□□□□ -0.49
CCDC66-221ENST00000487739 CRISPLD2Q9H0B8 497 aa11.96□□□□□ -0.49
CCDC66-221ENST00000487739 BBXQ8WY36 941 aaPredicted RBP11.95□□□□□ -0.5
CCDC66-221ENST00000487739 ZNF316A6NFI3 1004 aaPredicted RBP11.94□□□□□ -0.5
CCDC66-221ENST00000487739 NUDT7P0C024 238 aa11.94□□□□□ -0.5
CCDC66-221ENST00000487739 KRTAP3-3Q9BYR6 98 aa11.94□□□□□ -0.5
CCDC66-221ENST00000487739 KRTAP3-2Q9BYR7 98 aa11.94□□□□□ -0.5
CCDC66-221ENST00000487739 PDE4AP27815 886 aa11.92□□□□□ -0.5
CCDC66-221ENST00000487739 PTCD2Q8WV60 388 aaKnown RBP11.92□□□□□ -0.5
CCDC66-221ENST00000487739 NCKAP5LQ9HCH0 1330 aa11.9□□□□□ -0.5
CCDC66-221ENST00000487739 PPP1R15BQ5SWA1 713 aa11.9□□□□□ -0.5
CCDC66-221ENST00000487739 ZNF687Q8N1G0 1237 aa11.9□□□□□ -0.5
CCDC66-221ENST00000487739 SPNS2Q8IVW8 549 aa11.89□□□□□ -0.51
CCDC66-221ENST00000487739 TBC1D12O60347 775 aa11.87□□□□□ -0.51
CCDC66-221ENST00000487739 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.86□□□□□ -0.51
CCDC66-221ENST00000487739 LHX6Q9UPM6 363 aa11.86□□□□□ -0.51
CCDC66-221ENST00000487739 LARP6Q9BRS8 491 aaKnown RBP11.85□□□□□ -0.51
CCDC66-221ENST00000487739 DDX27Q96GQ7 796 aaKnown RBP11.84□□□□□ -0.51
CCDC66-221ENST00000487739 PSDA5PKW4 1024 aaPredicted RBP11.82□□□□□ -0.52
CCDC66-221ENST00000487739 MMRN1Q13201 1228 aa11.82□□□□□ -0.52
CCDC66-221ENST00000487739 OXER1Q8TDS5 423 aa11.82□□□□□ -0.52
CCDC66-221ENST00000487739 KDM4FA0A1W2PPD8 638 aa11.81□□□□□ -0.52
CCDC66-221ENST00000487739 MFSD10Q14728 455 aa11.81□□□□□ -0.52
CCDC66-221ENST00000487739 SPRYD3Q8NCJ5 442 aa11.81□□□□□ -0.52
CCDC66-221ENST00000487739 UPF1Q92900 1129 aaKnown RBP eCLIP11.81□□□□□ -0.52
CCDC66-221ENST00000487739 CADPS2Q86UW7 1296 aa11.8□□□□□ -0.52
CCDC66-221ENST00000487739 PBX2P40425 430 aa11.78□□□□□ -0.52
CCDC66-221ENST00000487739 PPP4R3BQ5MIZ7 849 aa11.73□□□□□ -0.53
CCDC66-221ENST00000487739 PAXIP1Q6ZW49 1069 aaPredicted RBP11.73□□□□□ -0.53
CCDC66-221ENST00000487739 LSM11P83369 360 aaKnown RBP eCLIP11.72□□□□□ -0.53
CCDC66-221ENST00000487739 CFAP44Q96MT7 982 aa11.72□□□□□ -0.53
CCDC66-221ENST00000487739 ANKRD13DQ6ZTN6 518 aa11.71□□□□□ -0.53
CCDC66-221ENST00000487739 POTEEQ6S8J3 1075 aa11.69□□□□□ -0.54
CCDC66-221ENST00000487739 AXIN2Q9Y2T1 843 aa11.69□□□□□ -0.54
CCDC66-221ENST00000487739 ARHGAP33O14559 1287 aa11.68□□□□□ -0.54
CCDC66-221ENST00000487739 PTGER2P43116 358 aa11.68□□□□□ -0.54
CCDC66-221ENST00000487739 MAP3K9P80192 1104 aa11.68□□□□□ -0.54
CCDC66-221ENST00000487739 EMILIN3Q9NT22 766 aa11.68□□□□□ -0.54
CCDC66-221ENST00000487739 EVI5O60447 810 aa11.67□□□□□ -0.54
CCDC66-221ENST00000487739 ZNF454Q8N9F8 522 aa11.65□□□□□ -0.54
CCDC66-221ENST00000487739 CAMK2BQ13554 666 aa11.64□□□□□ -0.55
CCDC66-221ENST00000487739 ANO8Q9HCE9 1232 aaPredicted RBP11.64□□□□□ -0.55
CCDC66-221ENST00000487739 MYT1LQ9UL68 1186 aa11.64□□□□□ -0.55
CCDC66-221ENST00000487739 RNF166Q96A37 237 aaPredicted RBP11.63□□□□□ -0.55
CCDC66-221ENST00000487739 KCNH8Q96L42 1107 aa11.63□□□□□ -0.55
CCDC66-221ENST00000487739 FOSBP53539 338 aa11.62□□□□□ -0.55
CCDC66-221ENST00000487739 JPH4Q96JJ6 628 aa11.62□□□□□ -0.55
CCDC66-221ENST00000487739 PSEN2P49810 448 aa11.6□□□□□ -0.55
CCDC66-221ENST00000487739 ADGRD1Q6QNK2 874 aa11.59□□□□□ -0.55
CCDC66-221ENST00000487739 KCNK17Q96T54 332 aa11.59□□□□□ -0.55
CCDC66-221ENST00000487739 BCL2L12Q9HB09 334 aa11.58□□□□□ -0.56
CCDC66-221ENST00000487739 TK2O00142 265 aa11.57□□□□□ -0.56
CCDC66-221ENST00000487739 DPYSL4O14531 572 aa11.57□□□□□ -0.56
CCDC66-221ENST00000487739 DMRTA1Q5VZB9 504 aa11.57□□□□□ -0.56
CCDC66-221ENST00000487739 ZDHHC16Q969W1 377 aa11.56□□□□□ -0.56
CCDC66-221ENST00000487739 PTPREP23469 700 aa11.54□□□□□ -0.56
CCDC66-221ENST00000487739 WDR70Q9NW82 654 aa11.54□□□□□ -0.56
CCDC66-221ENST00000487739 E2F4Q16254 413 aa11.51□□□□□ -0.57
CCDC66-221ENST00000487739 ADAM33Q9BZ11 813 aa11.51□□□□□ -0.57
CCDC66-221ENST00000487739 PCDHGA10Q9Y5H3 936 aa11.51□□□□□ -0.57
CCDC66-221ENST00000487739 PHF14O94880 888 aa11.5□□□□□ -0.57
CCDC66-221ENST00000487739 HRO43593 1189 aa11.49□□□□□ -0.57
CCDC66-221ENST00000487739 TYW1BQ6NUM6 668 aa11.49□□□□□ -0.57
CCDC66-221ENST00000487739 FBXW7Q969H0 707 aa11.49□□□□□ -0.57
CCDC66-221ENST00000487739 PDIA6Q15084 440 aa11.47□□□□□ -0.57
CCDC66-221ENST00000487739 STAC3Q96MF2 364 aa11.47□□□□□ -0.57
CCDC66-221ENST00000487739 SLC4A5Q9BY07 1137 aa11.47□□□□□ -0.57
CCDC66-221ENST00000487739 VPS9D1Q9Y2B5 631 aa11.47□□□□□ -0.57
CCDC66-221ENST00000487739 EPAS1Q99814 870 aa11.46□□□□□ -0.57
CCDC66-221ENST00000487739 SPDYE16A6NNV3 312 aaPredicted RBP11.45□□□□□ -0.58
CCDC66-221ENST00000487739 ZBED2Q9BTP6 218 aa11.44□□□□□ -0.58
CCDC66-221ENST00000487739 TSHZ2Q9NRE2 1034 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms