RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 POGZQ7Z3K3 1410 aa32.64■■■□□ 2.82
HDAC4-209ENST00000487617 ZMYM4Q5VZL5 1548 aa32.61■■■□□ 2.81
HDAC4-209ENST00000487617 MTUS2Q5JR59 1369 aa32.6■■■□□ 2.81
HDAC4-209ENST00000487617 ARHGEF40Q8TER5 1519 aa32.6■■■□□ 2.81
HDAC4-209ENST00000487617 ARID4BQ4LE39 1312 aaPredicted RBP32.58■■■□□ 2.81
HDAC4-209ENST00000487617 PREX2Q70Z35 1606 aa32.58■■■□□ 2.81
HDAC4-209ENST00000487617 MAGI2Q86UL8 1455 aa32.56■■■□□ 2.8
HDAC4-209ENST00000487617 YEATS2Q9ULM3 1422 aa32.56■■■□□ 2.8
HDAC4-209ENST00000487617 CDC42BPBQ9Y5S2 1711 aa32.56■■■□□ 2.8
HDAC4-209ENST00000487617 ZFYVE16Q7Z3T8 1539 aa32.56■■■□□ 2.8
HDAC4-209ENST00000487617 ZNF518AQ6AHZ1 1483 aa32.51■■■□□ 2.79
HDAC4-209ENST00000487617 AFAP1Q8N556 730 aa32.51■■■□□ 2.79
HDAC4-209ENST00000487617 GPATCH8Q9UKJ3 1502 aaKnown RBP32.5■■■□□ 2.79
HDAC4-209ENST00000487617 VPS8Q8N3P4 1428 aa32.5■■■□□ 2.79
HDAC4-209ENST00000487617 CDC42BPAQ5VT25 1732 aa32.49■■■□□ 2.79
HDAC4-209ENST00000487617 CCNB3Q8WWL7 1395 aa32.48■■■□□ 2.79
HDAC4-209ENST00000487617 ZNF777Q9ULD5 760 aaPredicted RBP32.48■■■□□ 2.79
HDAC4-209ENST00000487617 EHBP1L1Q8N3D4 1523 aa32.46■■■□□ 2.79
HDAC4-209ENST00000487617 ABCC1P33527 1531 aa32.46■■■□□ 2.79
HDAC4-209ENST00000487617 MYT1LQ9UL68 1186 aa32.45■■■□□ 2.79
HDAC4-209ENST00000487617 CFDP1Q9UEE9 299 aaPredicted RBP32.44■■■□□ 2.78
HDAC4-209ENST00000487617 ARHGEF12Q9NZN5 1544 aa32.44■■■□□ 2.78
HDAC4-209ENST00000487617 TRAPPC8Q9Y2L5 1435 aa32.43■■■□□ 2.78
HDAC4-209ENST00000487617 KDM5CP41229 1560 aa32.42■■■□□ 2.78
HDAC4-209ENST00000487617 ADAMTSL3P82987 1691 aa32.41■■■□□ 2.78
HDAC4-209ENST00000487617 ATP10AO60312 1499 aa32.41■■■□□ 2.78
HDAC4-209ENST00000487617 BCORL1Q5H9F3 1711 aa32.4■■■□□ 2.78
HDAC4-209ENST00000487617 ITSN2Q9NZM3 1697 aa32.37■■■□□ 2.77
HDAC4-209ENST00000487617 TIAM1Q13009 1591 aa32.36■■■□□ 2.77
HDAC4-209ENST00000487617 SAMD9LQ8IVG5 1584 aa32.36■■■□□ 2.77
HDAC4-209ENST00000487617 C9orf84Q5VXU9 1444 aa32.36■■■□□ 2.77
HDAC4-209ENST00000487617 HECW2Q9P2P5 1572 aa32.35■■■□□ 2.77
HDAC4-209ENST00000487617 HNRNPMP52272 730 aaKnown RBP eCLIP32.34■■■□□ 2.779e-8■■■■□ 20.5
HDAC4-209ENST00000487617 MLH3Q9UHC1 1453 aa32.34■■■□□ 2.77
HDAC4-209ENST00000487617 MLECQ14165 292 aa32.33■■■□□ 2.77
HDAC4-209ENST00000487617 PTPRMP28827 1452 aa32.33■■■□□ 2.77
HDAC4-209ENST00000487617 SIGLEC1Q9BZZ2 1709 aa32.32■■■□□ 2.76
HDAC4-209ENST00000487617 SYCP2Q9BX26 1530 aa32.31■■■□□ 2.76
HDAC4-209ENST00000487617 PLEKHH2Q8IVE3 1493 aa32.31■■■□□ 2.76
HDAC4-209ENST00000487617 MADDQ8WXG6 1647 aa32.31■■■□□ 2.76
HDAC4-209ENST00000487617 KIAA1107Q9UPP5 1409 aa32.3■■■□□ 2.76
HDAC4-209ENST00000487617 NCOA2Q15596 1464 aa32.29■■■□□ 2.76
HDAC4-209ENST00000487617 DIP2CQ9Y2E4 1556 aa32.27■■■□□ 2.76
HDAC4-209ENST00000487617 SUPT6HQ7KZ85 1726 aaKnown RBP32.26■■■□□ 2.76
HDAC4-209ENST00000487617 LRRC9Q6ZRR7 1453 aa32.26■■■□□ 2.75
HDAC4-209ENST00000487617 ZNF644Q9H582 1327 aaPredicted RBP32.26■■■□□ 2.75
HDAC4-209ENST00000487617 SPAG9O60271 1321 aaKnown RBP32.24■■■□□ 2.75
HDAC4-209ENST00000487617 MAP3K1Q13233 1512 aa32.23■■■□□ 2.75
HDAC4-209ENST00000487617 ABCA6Q8N139 1617 aa32.22■■■□□ 2.75
HDAC4-209ENST00000487617 KANK4Q5T7N3 995 aaPredicted RBP32.21■■■□□ 2.75
HDAC4-209ENST00000487617 RIMS1Q86UR5 1692 aaKnown RBP32.2■■■□□ 2.74
HDAC4-209ENST00000487617 KIDINS220Q9ULH0 1771 aa32.19■■■□□ 2.74
HDAC4-209ENST00000487617 APLP2Q06481 763 aa32.18■■■□□ 2.74
HDAC4-209ENST00000487617 REREQ9P2R6 1566 aa32.18■■■□□ 2.74
HDAC4-209ENST00000487617 PLPPR3Q6T4P5 718 aa32.15■■■□□ 2.74
HDAC4-209ENST00000487617 MBD5Q9P267 1494 aa32.13■■■□□ 2.73
HDAC4-209ENST00000487617 ATP7AQ04656 1500 aa32.11■■■□□ 2.73
HDAC4-209ENST00000487617 AGLP35573 1532 aa32.1■■■□□ 2.73
HDAC4-209ENST00000487617 FER1L4A9Z1Z3 1794 aa32.1■■■□□ 2.73
HDAC4-209ENST00000487617 CAMSAP2Q08AD1 1489 aa32.1■■■□□ 2.73
HDAC4-209ENST00000487617 INO80Q9ULG1 1556 aaPredicted RBP32.07■■■□□ 2.72
HDAC4-209ENST00000487617 RSPH4AQ5TD94 716 aa32.03■■■□□ 2.72
HDAC4-209ENST00000487617 CCDC141Q6ZP82 1450 aa32.02■■■□□ 2.72
HDAC4-209ENST00000487617 ESF1Q9H501 851 aaKnown RBP32.01■■■□□ 2.71
HDAC4-209ENST00000487617 A2MP01023 1474 aa32.01■■■□□ 2.71
HDAC4-209ENST00000487617 RTEL1-TNFRSF6BF6WH68 1400 aa32■■■□□ 2.71
HDAC4-209ENST00000487617 MYOM3Q5VTT5 1437 aa32■■■□□ 2.71
HDAC4-209ENST00000487617 CEBPAP49715 358 aaPredicted RBP31.98■■■□□ 2.71
HDAC4-209ENST00000487617 MIA2Q96PC5 1412 aa31.96■■■□□ 2.71
HDAC4-209ENST00000487617 PLXNC1O60486 1568 aa31.94■■■□□ 2.7
HDAC4-209ENST00000487617 LMTK3Q96Q04 1460 aa31.93■■■□□ 2.7
HDAC4-209ENST00000487617 TSPY4P0CV99 314 aa31.93■■■□□ 2.7
HDAC4-209ENST00000487617 TSPY10P0CW01 314 aa31.93■■■□□ 2.7
HDAC4-209ENST00000487617 ARHGEF5Q12774 1597 aa31.93■■■□□ 2.7
HDAC4-209ENST00000487617 ADGBQ8N7X0 1667 aa31.9■■■□□ 2.7
HDAC4-209ENST00000487617 CNTLNQ9NXG0 1405 aa31.89■■■□□ 2.7
HDAC4-209ENST00000487617 DHX29Q7Z478 1369 aaKnown RBP31.88■■■□□ 2.69
HDAC4-209ENST00000487617 GGT6Q6P531 493 aa31.87■■■□□ 2.69
HDAC4-209ENST00000487617 HSPA2P54652 639 aa31.83■■■□□ 2.69
HDAC4-209ENST00000487617 C3P01024 1663 aa31.79■■■□□ 2.68
HDAC4-209ENST00000487617 KIF3BO15066 747 aa31.78■■■□□ 2.68
HDAC4-209ENST00000487617 PPP6R1Q9UPN7 881 aa31.78■■■□□ 2.68
HDAC4-209ENST00000487617 FGD6Q6ZV73 1430 aa31.77■■■□□ 2.68
HDAC4-209ENST00000487617 ZMYM3Q14202 1370 aa31.77■■■□□ 2.68
HDAC4-209ENST00000487617 PTPN23Q9H3S7 1636 aa31.76■■■□□ 2.67
HDAC4-209ENST00000487617 MAST1Q9Y2H9 1570 aa31.76■■■□□ 2.67
HDAC4-209ENST00000487617 UHRF1BP1Q6BDS2 1440 aa31.75■■■□□ 2.67
HDAC4-209ENST00000487617 PREX1Q8TCU6 1659 aa31.73■■■□□ 2.67
HDAC4-209ENST00000487617 MROH2AA6NES4 1674 aa31.72■■■□□ 2.67
HDAC4-209ENST00000487617 CLTCQ00610 1675 aaKnown RBP31.7■■■□□ 2.67
HDAC4-209ENST00000487617 ABCC5O15440 1437 aa31.7■■■□□ 2.67
HDAC4-209ENST00000487617 TCOF1Q13428 1488 aaKnown RBP31.7■■■□□ 2.66
HDAC4-209ENST00000487617 SETD1BQ9UPS6 1966 aaKnown RBP31.68■■■□□ 2.66
HDAC4-209ENST00000487617 NPATQ14207 1427 aa31.66■■■□□ 2.66
HDAC4-209ENST00000487617 DAPK1P53355 1430 aa31.65■■■□□ 2.66
HDAC4-209ENST00000487617 SHANK2Q9UPX8 1470 aa31.65■■■□□ 2.66
HDAC4-209ENST00000487617 WASHC2CQ9Y4E1 1318 aa31.61■■■□□ 2.65
HDAC4-209ENST00000487617 FAM50AQ14320 339 aaKnown RBP31.6■■■□□ 2.65
HDAC4-209ENST00000487617 DNMT1P26358 1616 aaKnown RBP31.6■■■□□ 2.65
HDAC4-209ENST00000487617 PTPRKQ15262 1439 aa31.59■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms