RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 EHMT2Q96KQ7 1210 aa11.4□□□□□ -0.58
VPS50-218ENST00000485994 CDK11AQ9UQ88 783 aaPredicted RBP11.4□□□□□ -0.58
VPS50-218ENST00000485994 ARAP3Q8WWN8 1544 aa11.4□□□□□ -0.59
VPS50-218ENST00000485994 CHRDL2Q6WN34 429 aa11.39□□□□□ -0.59
VPS50-218ENST00000485994 NEO1Q92859 1461 aa11.37□□□□□ -0.59
VPS50-218ENST00000485994 SAMD1Q6SPF0 538 aaPredicted RBP11.36□□□□□ -0.59
VPS50-218ENST00000485994 KDM4FA0A1W2PPD8 638 aa11.35□□□□□ -0.59
VPS50-218ENST00000485994 HECW1Q76N89 1606 aa11.35□□□□□ -0.59
VPS50-218ENST00000485994 POLA2Q14181 598 aa11.34□□□□□ -0.59
VPS50-218ENST00000485994 RBM42Q9BTD8 480 aaKnown RBP11.34□□□□□ -0.59
VPS50-218ENST00000485994 CASKIN1Q8WXD9 1431 aa11.34□□□□□ -0.59
VPS50-218ENST00000485994 CLIP1P30622 1438 aa11.33□□□□□ -0.6
VPS50-218ENST00000485994 CDK13Q14004 1512 aaKnown RBP11.32□□□□□ -0.6
VPS50-218ENST00000485994 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.32□□□□□ -0.6
VPS50-218ENST00000485994 ATP1B4Q9UN42 357 aaPredicted RBP11.32□□□□□ -0.6
VPS50-218ENST00000485994 PLCH2O75038 1416 aa11.31□□□□□ -0.6
VPS50-218ENST00000485994 TROQ12816 1431 aaPredicted RBP11.3□□□□□ -0.6
VPS50-218ENST00000485994 AKNAQ7Z591 1439 aa11.3□□□□□ -0.6
VPS50-218ENST00000485994 RAPGEF3O95398 923 aa11.29□□□□□ -0.6
VPS50-218ENST00000485994 CCDC18Q5T9S5 1454 aa11.29□□□□□ -0.6
VPS50-218ENST00000485994 FANCAO15360 1455 aa11.28□□□□□ -0.6
VPS50-218ENST00000485994 EFCAB2Q5VUJ9 269 aa11.28□□□□□ -0.6
VPS50-218ENST00000485994 FYCO1Q9BQS8 1478 aa11.27□□□□□ -0.6
VPS50-218ENST00000485994 LRRIQ1Q96JM4 1722 aa11.26□□□□□ -0.61
VPS50-218ENST00000485994 DENND4BO75064 1496 aaPredicted RBP11.26□□□□□ -0.61
VPS50-218ENST00000485994 CFAP74Q9C0B2 1584 aa11.26□□□□□ -0.61
VPS50-218ENST00000485994 TTC37Q6PGP7 1564 aa11.25□□□□□ -0.61
VPS50-218ENST00000485994 MAGI2Q86UL8 1455 aa11.24□□□□□ -0.61
VPS50-218ENST00000485994 SCAPERQ9BY12 1400 aa11.23□□□□□ -0.61
VPS50-218ENST00000485994 ADGRL1O94910 1474 aa11.23□□□□□ -0.61
VPS50-218ENST00000485994 PCF11O94913 1555 aaKnown RBP11.23□□□□□ -0.61
VPS50-218ENST00000485994 RICTORQ6R327 1708 aa11.23□□□□□ -0.61
VPS50-218ENST00000485994 LOC105371045A0A1W2PR82 267 aa11.22□□□□□ -0.61
VPS50-218ENST00000485994 KIF14Q15058 1648 aa11.22□□□□□ -0.61
VPS50-218ENST00000485994 CEP162Q5TB80 1403 aa11.22□□□□□ -0.61
VPS50-218ENST00000485994 MYO5CQ9NQX4 1742 aa11.22□□□□□ -0.61
VPS50-218ENST00000485994 FRMPD1Q5SYB0 1578 aa11.21□□□□□ -0.61
VPS50-218ENST00000485994 ZMYM4Q5VZL5 1548 aa11.19□□□□□ -0.62
VPS50-218ENST00000485994 POGZQ7Z3K3 1410 aa11.18□□□□□ -0.62
VPS50-218ENST00000485994 CDC42BPBQ9Y5S2 1711 aa11.18□□□□□ -0.62
VPS50-218ENST00000485994 MYCNP04198 464 aaPredicted RBP11.18□□□□□ -0.62
VPS50-218ENST00000485994 ATF5Q9Y2D1 282 aaPredicted RBP11.18□□□□□ -0.62
VPS50-218ENST00000485994 AFAP1Q8N556 730 aa11.16□□□□□ -0.62
VPS50-218ENST00000485994 SP7Q8TDD2 431 aaPredicted RBP11.16□□□□□ -0.62
VPS50-218ENST00000485994 ZNF518AQ6AHZ1 1483 aa11.16□□□□□ -0.62
VPS50-218ENST00000485994 MTUS2Q5JR59 1369 aa11.16□□□□□ -0.62
VPS50-218ENST00000485994 ARHGAP5Q13017 1502 aa11.15□□□□□ -0.62
VPS50-218ENST00000485994 GPATCH8Q9UKJ3 1502 aaKnown RBP11.15□□□□□ -0.62
VPS50-218ENST00000485994 ADAMTSL3P82987 1691 aa11.15□□□□□ -0.62
VPS50-218ENST00000485994 ATP10AO60312 1499 aa11.15□□□□□ -0.62
VPS50-218ENST00000485994 ARHGEF40Q8TER5 1519 aa11.14□□□□□ -0.63
VPS50-218ENST00000485994 MLH3Q9UHC1 1453 aa11.14□□□□□ -0.63
VPS50-218ENST00000485994 PREX2Q70Z35 1606 aa11.14□□□□□ -0.63
VPS50-218ENST00000485994 KIAA1107Q9UPP5 1409 aa11.14□□□□□ -0.63
VPS50-218ENST00000485994 CDC42BPAQ5VT25 1732 aa11.14□□□□□ -0.63
VPS50-218ENST00000485994 ZFYVE16Q7Z3T8 1539 aa11.14□□□□□ -0.63
VPS50-218ENST00000485994 ARID4BQ4LE39 1312 aaPredicted RBP11.13□□□□□ -0.63
VPS50-218ENST00000485994 KDM5CP41229 1560 aa11.13□□□□□ -0.63
VPS50-218ENST00000485994 VPS8Q8N3P4 1428 aa11.13□□□□□ -0.63
VPS50-218ENST00000485994 YEATS2Q9ULM3 1422 aa11.13□□□□□ -0.63
VPS50-218ENST00000485994 CFDP1Q9UEE9 299 aaPredicted RBP11.13□□□□□ -0.63
VPS50-218ENST00000485994 CCNB3Q8WWL7 1395 aa11.13□□□□□ -0.63
VPS50-218ENST00000485994 BCORL1Q5H9F3 1711 aa11.12□□□□□ -0.63
VPS50-218ENST00000485994 ARHGEF12Q9NZN5 1544 aa11.12□□□□□ -0.63
VPS50-218ENST00000485994 MAP3K1Q13233 1512 aa11.11□□□□□ -0.63
VPS50-218ENST00000485994 PLEKHH2Q8IVE3 1493 aa11.11□□□□□ -0.63
VPS50-218ENST00000485994 TRAPPC8Q9Y2L5 1435 aa11.1□□□□□ -0.63
VPS50-218ENST00000485994 ABCC1P33527 1531 aa11.1□□□□□ -0.63
VPS50-218ENST00000485994 RSPH4AQ5TD94 716 aa11.1□□□□□ -0.63
VPS50-218ENST00000485994 C9orf84Q5VXU9 1444 aa11.09□□□□□ -0.63
VPS50-218ENST00000485994 EHBP1L1Q8N3D4 1523 aa11.09□□□□□ -0.63
VPS50-218ENST00000485994 PTPRMP28827 1452 aa11.09□□□□□ -0.63
VPS50-218ENST00000485994 HNRNPMP52272 730 aaKnown RBP eCLIP11.09□□□□□ -0.63
VPS50-218ENST00000485994 PIP4P2Q8N4L2 257 aa11.09□□□□□ -0.63
VPS50-218ENST00000485994 REREQ9P2R6 1566 aa11.08□□□□□ -0.64
VPS50-218ENST00000485994 ZNF777Q9ULD5 760 aaPredicted RBP11.08□□□□□ -0.64
VPS50-218ENST00000485994 SETD1BQ9UPS6 1966 aaKnown RBP11.08□□□□□ -0.64
VPS50-218ENST00000485994 ITSN2Q9NZM3 1697 aa11.08□□□□□ -0.64
VPS50-218ENST00000485994 TIAM1Q13009 1591 aa11.07□□□□□ -0.64
VPS50-218ENST00000485994 SAMD9LQ8IVG5 1584 aa11.07□□□□□ -0.64
VPS50-218ENST00000485994 HECW2Q9P2P5 1572 aa11.07□□□□□ -0.64
VPS50-218ENST00000485994 AGLP35573 1532 aa11.06□□□□□ -0.64
VPS50-218ENST00000485994 SPAG9O60271 1321 aaKnown RBP11.06□□□□□ -0.64
VPS50-218ENST00000485994 KIDINS220Q9ULH0 1771 aa11.05□□□□□ -0.64
VPS50-218ENST00000485994 SUPT6HQ7KZ85 1726 aaKnown RBP11.05□□□□□ -0.64
VPS50-218ENST00000485994 REM2Q8IYK8 340 aaPredicted RBP11.05□□□□□ -0.64
VPS50-218ENST00000485994 AKT1S1Q96B36 256 aa11.05□□□□□ -0.64
VPS50-218ENST00000485994 SIGLEC1Q9BZZ2 1709 aa11.05□□□□□ -0.64
VPS50-218ENST00000485994 MYT1LQ9UL68 1186 aa11.05□□□□□ -0.64
VPS50-218ENST00000485994 LRRC9Q6ZRR7 1453 aa11.05□□□□□ -0.64
VPS50-218ENST00000485994 MBD5Q9P267 1494 aa11.05□□□□□ -0.64
VPS50-218ENST00000485994 DIP2CQ9Y2E4 1556 aa11.04□□□□□ -0.64
VPS50-218ENST00000485994 RTEL1-TNFRSF6BF6WH68 1400 aa11.04□□□□□ -0.64
VPS50-218ENST00000485994 MADDQ8WXG6 1647 aa11.04□□□□□ -0.64
VPS50-218ENST00000485994 NCOA2Q15596 1464 aa11.04□□□□□ -0.64
VPS50-218ENST00000485994 ZNF644Q9H582 1327 aaPredicted RBP11.04□□□□□ -0.64
VPS50-218ENST00000485994 KANK4Q5T7N3 995 aaPredicted RBP11.03□□□□□ -0.64
VPS50-218ENST00000485994 SYCP2Q9BX26 1530 aa11.03□□□□□ -0.64
VPS50-218ENST00000485994 MLECQ14165 292 aa11.02□□□□□ -0.65
VPS50-218ENST00000485994 ABCA6Q8N139 1617 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms