RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 SCAPERQ9BY12 1400 aa27.1■■□□□ 1.93
VIM-205ENST00000485947 ZMYM4Q5VZL5 1548 aa27.1■■□□□ 1.93
VIM-205ENST00000485947 RICTORQ6R327 1708 aa27.1■■□□□ 1.93
VIM-205ENST00000485947 CEP162Q5TB80 1403 aa27.09■■□□□ 1.93
VIM-205ENST00000485947 POGZQ7Z3K3 1410 aa27.07■■□□□ 1.92
VIM-205ENST00000485947 ARHGAP5Q13017 1502 aa27.04■■□□□ 1.92
VIM-205ENST00000485947 ARHGEF40Q8TER5 1519 aa27.04■■□□□ 1.92
VIM-205ENST00000485947 ZNF518AQ6AHZ1 1483 aa27■■□□□ 1.91
VIM-205ENST00000485947 ZFYVE16Q7Z3T8 1539 aa26.99■■□□□ 1.91
VIM-205ENST00000485947 PTPRMP28827 1452 aa26.98■■□□□ 1.91
VIM-205ENST00000485947 ADAMTSL3P82987 1691 aa26.98■■□□□ 1.91
VIM-205ENST00000485947 ARID4BQ4LE39 1312 aaPredicted RBP26.96■■□□□ 1.91
VIM-205ENST00000485947 PREX2Q70Z35 1606 aa26.96■■□□□ 1.91
VIM-205ENST00000485947 MTUS2Q5JR59 1369 aa26.95■■□□□ 1.9
VIM-205ENST00000485947 CDC42BPBQ9Y5S2 1711 aa26.93■■□□□ 1.9
VIM-205ENST00000485947 YEATS2Q9ULM3 1422 aa26.92■■□□□ 1.9
VIM-205ENST00000485947 KDM5CP41229 1560 aa26.91■■□□□ 1.9
VIM-205ENST00000485947 ATP10AO60312 1499 aa26.9■■□□□ 1.9
VIM-205ENST00000485947 GPATCH8Q9UKJ3 1502 aaKnown RBP26.9■■□□□ 1.9
VIM-205ENST00000485947 BCORL1Q5H9F3 1711 aa26.89■■□□□ 1.9
VIM-205ENST00000485947 AFAP1Q8N556 730 aa26.88■■□□□ 1.89
VIM-205ENST00000485947 ABCC1P33527 1531 aa26.87■■□□□ 1.89
VIM-205ENST00000485947 MLH3Q9UHC1 1453 aa26.87■■□□□ 1.89
VIM-205ENST00000485947 CCNB3Q8WWL7 1395 aa26.86■■□□□ 1.89
VIM-205ENST00000485947 CDC42BPAQ5VT25 1732 aa26.86■■□□□ 1.89
VIM-205ENST00000485947 C9orf84Q5VXU9 1444 aa26.86■■□□□ 1.89
VIM-205ENST00000485947 EHBP1L1Q8N3D4 1523 aa26.85■■□□□ 1.89
VIM-205ENST00000485947 VPS8Q8N3P4 1428 aa26.84■■□□□ 1.89
VIM-205ENST00000485947 CFDP1Q9UEE9 299 aaPredicted RBP26.84■■□□□ 1.89
VIM-205ENST00000485947 PLEKHH2Q8IVE3 1493 aa26.84■■□□□ 1.89
VIM-205ENST00000485947 LMTK3Q96Q04 1460 aa26.84■■□□□ 1.89
VIM-205ENST00000485947 KIAA1107Q9UPP5 1409 aa26.83■■□□□ 1.89
VIM-205ENST00000485947 ARHGEF12Q9NZN5 1544 aa26.8■■□□□ 1.88
VIM-205ENST00000485947 TRAPPC8Q9Y2L5 1435 aa26.8■■□□□ 1.88
VIM-205ENST00000485947 MYT1LQ9UL68 1186 aa26.78■■□□□ 1.88
VIM-205ENST00000485947 REREQ9P2R6 1566 aa26.78■■□□□ 1.88
VIM-205ENST00000485947 ITSN2Q9NZM3 1697 aa26.77■■□□□ 1.88
VIM-205ENST00000485947 MADDQ8WXG6 1647 aa26.77■■□□□ 1.88
VIM-205ENST00000485947 ZNF777Q9ULD5 760 aaPredicted RBP26.77■■□□□ 1.88
VIM-205ENST00000485947 SAMD9LQ8IVG5 1584 aa26.75■■□□□ 1.87
VIM-205ENST00000485947 MAP3K1Q13233 1512 aa26.75■■□□□ 1.87
VIM-205ENST00000485947 TIAM1Q13009 1591 aa26.72■■□□□ 1.87
VIM-205ENST00000485947 DIP2CQ9Y2E4 1556 aa26.71■■□□□ 1.87
VIM-205ENST00000485947 AGLP35573 1532 aa26.7■■□□□ 1.87
VIM-205ENST00000485947 SYCP2Q9BX26 1530 aa26.7■■□□□ 1.86
VIM-205ENST00000485947 SPAG9O60271 1321 aaKnown RBP26.69■■□□□ 1.86
VIM-205ENST00000485947 HNRNPMP52272 730 aaKnown RBP eCLIP26.69■■□□□ 1.86
VIM-205ENST00000485947 SIGLEC1Q9BZZ2 1709 aa26.69■■□□□ 1.86
VIM-205ENST00000485947 NCOA2Q15596 1464 aa26.68■■□□□ 1.86
VIM-205ENST00000485947 SUPT6HQ7KZ85 1726 aaKnown RBP26.67■■□□□ 1.86
VIM-205ENST00000485947 MLECQ14165 292 aa26.66■■□□□ 1.86
VIM-205ENST00000485947 RSPH4AQ5TD94 716 aa26.66■■□□□ 1.86
VIM-205ENST00000485947 ABCA6Q8N139 1617 aa26.65■■□□□ 1.86
VIM-205ENST00000485947 LRRC9Q6ZRR7 1453 aa26.65■■□□□ 1.86
VIM-205ENST00000485947 RIMS1Q86UR5 1692 aaKnown RBP26.65■■□□□ 1.86
VIM-205ENST00000485947 KIDINS220Q9ULH0 1771 aa26.65■■□□□ 1.86
VIM-205ENST00000485947 HSPA2P54652 639 aa26.62■■□□□ 1.85
VIM-205ENST00000485947 CERKQ8TCT0 537 aa26.62■■□□□ 1.85
VIM-205ENST00000485947 MBD5Q9P267 1494 aa26.61■■□□□ 1.85
VIM-205ENST00000485947 FER1L4A9Z1Z3 1794 aa26.59■■□□□ 1.85
VIM-205ENST00000485947 RTEL1-TNFRSF6BF6WH68 1400 aa26.59■■□□□ 1.85
VIM-205ENST00000485947 ILDR2Q71H61 639 aa26.59■■□□□ 1.85
VIM-205ENST00000485947 ATP7AQ04656 1500 aa26.59■■□□□ 1.85
VIM-205ENST00000485947 ZNF644Q9H582 1327 aaPredicted RBP26.58■■□□□ 1.85
VIM-205ENST00000485947 APLP2Q06481 763 aa26.57■■□□□ 1.84
VIM-205ENST00000485947 INO80Q9ULG1 1556 aaPredicted RBP26.56■■□□□ 1.84
VIM-205ENST00000485947 SOCS7O14512 581 aa26.55■■□□□ 1.84
VIM-205ENST00000485947 ESF1Q9H501 851 aaKnown RBP26.55■■□□□ 1.84
VIM-205ENST00000485947 CNTLNQ9NXG0 1405 aa26.54■■□□□ 1.84
VIM-205ENST00000485947 A2MP01023 1474 aa26.52■■□□□ 1.84
VIM-205ENST00000485947 CAMSAP2Q08AD1 1489 aa26.51■■□□□ 1.83
VIM-205ENST00000485947 CCDC141Q6ZP82 1450 aa26.51■■□□□ 1.83
VIM-205ENST00000485947 MIA2Q96PC5 1412 aa26.51■■□□□ 1.83
VIM-205ENST00000485947 KANK4Q5T7N3 995 aaPredicted RBP26.51■■□□□ 1.83
VIM-205ENST00000485947 PPP6R1Q9UPN7 881 aa26.51■■□□□ 1.83
VIM-205ENST00000485947 DISP3Q9P2K9 1392 aa26.5■■□□□ 1.83
VIM-205ENST00000485947 PLXNC1O60486 1568 aa26.49■■□□□ 1.83
VIM-205ENST00000485947 ARHGEF5Q12774 1597 aa26.46■■□□□ 1.83
VIM-205ENST00000485947 MYOM3Q5VTT5 1437 aa26.46■■□□□ 1.83
VIM-205ENST00000485947 ADGBQ8N7X0 1667 aa26.45■■□□□ 1.82
VIM-205ENST00000485947 TSPY4P0CV99 314 aa26.45■■□□□ 1.82
VIM-205ENST00000485947 TSPY10P0CW01 314 aa26.45■■□□□ 1.82
VIM-205ENST00000485947 DHX29Q7Z478 1369 aaKnown RBP26.44■■□□□ 1.82
VIM-205ENST00000485947 PLPPR3Q6T4P5 718 aa26.42■■□□□ 1.82
VIM-205ENST00000485947 SETD1BQ9UPS6 1966 aaKnown RBP26.42■■□□□ 1.82
VIM-205ENST00000485947 CEBPAP49715 358 aaPredicted RBP26.41■■□□□ 1.82
VIM-205ENST00000485947 MROH2AA6NES4 1674 aa26.36■■□□□ 1.81
VIM-205ENST00000485947 PREX1Q8TCU6 1659 aa26.36■■□□□ 1.81
VIM-205ENST00000485947 NPATQ14207 1427 aa26.36■■□□□ 1.81
VIM-205ENST00000485947 UHRF1BP1Q6BDS2 1440 aa26.36■■□□□ 1.81
VIM-205ENST00000485947 ZMYM3Q14202 1370 aa26.34■■□□□ 1.81
VIM-205ENST00000485947 GGT6Q6P531 493 aa26.34■■□□□ 1.81
VIM-205ENST00000485947 C3P01024 1663 aa26.33■■□□□ 1.81
VIM-205ENST00000485947 FAM135AQ9P2D6 1515 aa26.33■■□□□ 1.81
VIM-205ENST00000485947 MAST1Q9Y2H9 1570 aa26.33■■□□□ 1.8
VIM-205ENST00000485947 STRCQ7RTU9 1775 aa26.3■■□□□ 1.8
VIM-205ENST00000485947 SPATA31D1Q6ZQQ2 1576 aa26.29■■□□□ 1.8
VIM-205ENST00000485947 KIF3BO15066 747 aa26.28■■□□□ 1.8
VIM-205ENST00000485947 DMRT2Q9Y5R5 561 aa26.25■■□□□ 1.79
VIM-205ENST00000485947 FGD6Q6ZV73 1430 aa26.24■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms